Project measure / variable:   GMC10   bw_13wk

ID, description, units MPD:55901   bw_13wk   body weight   [g]  at age 12-13wks  
Data set, strains GMC10   inbred w/CC8   8 strains     sex: both     age: 12-13wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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GMC10 - body weight at age 12-13wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means20.6   g 25.4   g
Median of the strain means18.9   g 23.1   g
SD of the strain means± 10.0 ± 11.6
Coefficient of variation (CV)0.488 0.456
Min–max range of strain means12.9   –   43.6   g 15.6   –   50.8   g
Mean sample size per strain17.5   mice 16.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1703.4363 1703.4363 490.2708 < 0.0001
strain 7 27896.9233 3985.2748 1147.0131 < 0.0001
sex:strain 7 231.8794 33.1256 9.534 < 0.0001
Residuals 257 892.9415 3.4745


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.5 1.29   16 0.322 0.0661 17.6, 21.6 -0.11
129S1/SvImJ m 24.1 2.9   16 0.726 0.121 21.0, 30.1 -0.11
A/J f 18.2 1.41   16 0.353 0.0773 15.0, 21.3 -0.24
A/J m 22.0 0.915   16 0.229 0.0415 20.6, 23.6 -0.29
C57BL/6J f 20.6 1.1   16 0.275 0.0536 19.1, 22.7 0.0
C57BL/6J m 28.4 1.68   16 0.42 0.0591 25.5, 31.0 0.26
CAST/EiJ f 13.0 0.753   19 0.173 0.058 11.9, 14.4 -0.76
CAST/EiJ m 15.9 1.42   16 0.354 0.0888 12.9, 18.0 -0.82
NOD/ShiLtJ f 23.2 1.48   18 0.348 0.0636 20.6, 27.2 0.26
NOD/ShiLtJ m 29.1 2.25   16 0.563 0.0773 26.7, 33.5 0.32
NZO/HlLtJ f 43.6 3.67   17 0.89 0.0843 37.3, 50.3 2.29
NZO/HlLtJ m 50.8 2.69   17 0.652 0.053 46.5, 54.4 2.2
PWK/PhJ f 13.8 1.04   20 0.232 0.0753 11.6, 15.3 -0.68
PWK/PhJ m 17.1 1.52   20 0.34 0.0887 14.5, 19.5 -0.72
WSB/EiJ f 12.9 2.02   18 0.477 0.157 9.5, 17.2 -0.77
WSB/EiJ m 15.6 1.17   16 0.291 0.0748 13.3, 17.7 -0.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.5188 0.466 20.4364 18.6011
129S1/SvImJ m 24.0563 0.466 24.9739 23.1386
A/J f 18.2375 0.466 19.1552 17.3198
A/J m 22.0312 0.466 22.9489 21.1136
C57BL/6J f 20.5563 0.466 21.4739 19.6386
C57BL/6J m 28.4063 0.466 29.3239 27.4886
CAST/EiJ f 12.9842 0.4276 13.8263 12.1421
CAST/EiJ m 15.9313 0.466 16.8489 15.0136
NOD/ShiLtJ f 23.1944 0.4393 24.0596 22.3293
NOD/ShiLtJ m 29.1375 0.466 30.0552 28.2198
NZO/HlLtJ f 43.5529 0.4521 44.4432 42.6627
NZO/HlLtJ m 50.7588 0.4521 51.6491 49.8686
PWK/PhJ f 13.78 0.4168 14.6008 12.9592
PWK/PhJ m 17.125 0.4168 17.9458 16.3042
WSB/EiJ f 12.9 0.4393 13.7652 12.0348
WSB/EiJ m 15.5875 0.466 16.5052 14.6698


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.7875 0.3295 22.4364 21.1386
A/J both 20.1344 0.3295 20.7833 19.4855
C57BL/6J both 24.4813 0.3295 25.1301 23.8324
CAST/EiJ both 14.4577 0.3162 15.0805 13.835
NOD/ShiLtJ both 26.166 0.3202 26.7966 25.5354
NZO/HlLtJ both 47.1559 0.3197 47.7854 46.5264
PWK/PhJ both 15.4525 0.2947 16.0329 14.8721
WSB/EiJ both 14.2437 0.3202 14.8744 13.6131




  GWAS USING LINEAR MIXED MODELS