Phenotype measure:   Reed2   subscapular_fat

ID, description, units MPD:53117   subscapular_fat   subscapular white adipose weight   [g]
Data set, strains Reed2   B6.129 and 129.B6 consomic w/par   9 strains     sex: both     age: 26wks
Procedure fat pad weights
Ontology mappings

  STRAIN COMPARISON PLOT
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Reed2 - subscapular white adipose weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.247   g 0.258   g
Median of the strain means0.248   g 0.272   g
SD of the strain means± 0.0492 ± 0.0395
Coefficient of variation (CV)0.199 0.153
Min–max range of strain means0.188   –   0.338   g 0.194   –   0.310   g
Mean sample size per strain17.9   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0137 0.0137 1.0386 0.309
strain 8 0.3056 0.0382 2.8973 0.0041
sex:strain 8 0.2258 0.0282 2.1403 0.0323
Residuals 279 3.6785 0.0132


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3.B6By-Chr1 f 0.191 0.0751   19 0.0172 0.393 0.09, 0.32 -1.14
129P3.B6By-Chr1 m 0.22 0.0953   19 0.0219 0.433 0.1, 0.46 -0.96
129P3.B6By-Chr2 f 0.248 0.066   4 0.033 0.267 0.16, 0.32 0.02
129P3.B6By-Chr2 m 0.31 0.0787   5 0.0352 0.254 0.25, 0.43 1.31
129P3.B6By-Chr7 f 0.188 0.105   20 0.0234 0.556 -1.2
129P3.B6By-Chr7 m 0.272 0.113   20 0.0253 0.416 0.04, 0.56 0.35
129P3.B6By-Chr9 f 0.262 0.107   10 0.0338 0.408 0.08, 0.41 0.3
129P3.B6By-Chr9 m 0.244 0.119   11 0.0359 0.488 0.09, 0.44 -0.36
129P3/J f 0.215 0.108   24 0.0221 0.501 -0.65
129P3/J m 0.194 0.0902   14 0.0241 0.466 0.01, 0.36 -1.62
B6By.129P3-Chr2 f 0.338 0.16   16 0.0399 0.472 0.1, 0.68 1.85
B6By.129P3-Chr2 m 0.273 0.121   15 0.0312 0.443 0.11, 0.56 0.38
B6By.129P3-Chr7 f 0.226 0.13   20 0.0291 0.577 0.05, 0.54 -0.43
B6By.129P3-Chr7 m 0.283 0.121   20 0.027 0.425 0.06, 0.49 0.63
B6By.129P3-Chr9 f 0.299 0.141   19 0.0324 0.471 0.1, 0.57 1.06
B6By.129P3-Chr9 m 0.225 0.113   19 0.026 0.504 0.08, 0.48 -0.84
C57BL/6ByJ f 0.256 0.108   21 0.0235 0.42 0.09, 0.41 0.18
C57BL/6ByJ m 0.302 0.122   21 0.0267 0.404 0.05, 0.55 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 f 0.1911 0.0263 0.2429 0.1392
129P3.B6By-Chr1 m 0.22 0.0263 0.2719 0.1681
129P3.B6By-Chr2 f 0.2475 0.0574 0.3605 0.1345
129P3.B6By-Chr2 m 0.31 0.0514 0.4111 0.2089
129P3.B6By-Chr7 f 0.1885 0.0257 0.239 0.138
129P3.B6By-Chr7 m 0.272 0.0257 0.3225 0.2215
129P3.B6By-Chr9 f 0.262 0.0363 0.3335 0.1905
129P3.B6By-Chr9 m 0.2436 0.0346 0.3118 0.1755
129P3/J f 0.2154 0.0234 0.2616 0.1693
129P3/J m 0.1936 0.0307 0.254 0.1332
B6By.129P3-Chr2 f 0.3381 0.0287 0.3946 0.2816
B6By.129P3-Chr2 m 0.2727 0.0296 0.331 0.2143
B6By.129P3-Chr7 f 0.2255 0.0257 0.276 0.175
B6By.129P3-Chr7 m 0.2835 0.0257 0.334 0.233
B6By.129P3-Chr9 f 0.2995 0.0263 0.3513 0.2476
B6By.129P3-Chr9 m 0.2247 0.0263 0.2766 0.1729
C57BL/6ByJ f 0.2562 0.0251 0.3055 0.2069
C57BL/6ByJ m 0.3024 0.0251 0.3517 0.2531


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 both 0.2055 0.0186 0.2422 0.1689
129P3.B6By-Chr2 both 0.2788 0.0385 0.3546 0.2029
129P3.B6By-Chr7 both 0.2303 0.0182 0.266 0.1945
129P3.B6By-Chr9 both 0.2528 0.0251 0.3022 0.2034
129P3/J both 0.2045 0.0193 0.2425 0.1665
B6By.129P3-Chr2 both 0.3054 0.0206 0.346 0.2648
B6By.129P3-Chr7 both 0.2545 0.0182 0.2902 0.2188
B6By.129P3-Chr9 both 0.2621 0.0186 0.2988 0.2254
C57BL/6ByJ both 0.2793 0.0177 0.3142 0.2444




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA