Phenotype measure:   Reed2   subscapular_brown_fat

ID, description, units MPD:53116   subscapular_brown_fat   subscapular brown fat weight   [g]
Data set, strains Reed2   B6.129 and 129.B6 consomic w/par   9 strains     sex: both     age: 26wks
Procedure fat pad weights
Ontology mappings

  STRAIN COMPARISON PLOT
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Reed2 - subscapular brown fat weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.0941   g 0.109   g
Median of the strain means0.0890   g 0.108   g
SD of the strain means± 0.0136 ± 0.0128
Coefficient of variation (CV)0.145 0.117
Min–max range of strain means0.0820   –   0.125   g 0.0889   –   0.129   g
Mean sample size per strain17.9   mice 16.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0261 0.0261 15.8484 0.0001
strain 8 0.0197 0.0025 1.4927 0.1596
sex:strain 8 0.0156 0.002 1.1858 0.3075
Residuals 276 0.4543 0.0016


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3.B6By-Chr1 f 0.0842 0.018   19 0.00414 0.214 0.05, 0.11 -0.73
129P3.B6By-Chr1 m 0.102 0.041   19 0.00942 0.402 0.03, 0.19 -0.52
129P3.B6By-Chr2 f 0.125 0.0635   4 0.0318 0.508 0.06, 0.21 2.26
129P3.B6By-Chr2 m 0.106 0.023   5 0.0103 0.217 0.07, 0.13 -0.21
129P3.B6By-Chr7 f 0.089 0.0331   20 0.00739 0.372 0.03, 0.15 -0.37
129P3.B6By-Chr7 m 0.121 0.0427   20 0.00954 0.353 0.04, 0.22 0.97
129P3.B6By-Chr9 f 0.1 0.0245   10 0.00775 0.245 0.06, 0.13 0.43
129P3.B6By-Chr9 m 0.095 0.0363   10 0.0115 0.382 0.04, 0.14 -1.07
129P3/J f 0.101 0.0431   24 0.00879 0.425 0.02, 0.18 0.5
129P3/J m 0.119 0.0561   14 0.015 0.473 0.05, 0.24 0.81
B6By.129P3-Chr2 f 0.0963 0.0258   16 0.00645 0.268 0.05, 0.13 0.16
B6By.129P3-Chr2 m 0.109 0.0378   14 0.0101 0.348 0.07, 0.19 0.03
B6By.129P3-Chr7 f 0.086 0.0382   20 0.00853 0.444 0.03, 0.16 -0.59
B6By.129P3-Chr7 m 0.129 0.0638   20 0.0143 0.495 1.59
B6By.129P3-Chr9 f 0.082 0.0291   20 0.00651 0.355 0.04, 0.14 -0.89
B6By.129P3-Chr9 m 0.0889 0.0438   19 0.0101 0.493 0.02, 0.18 -1.55
C57BL/6ByJ f 0.0835 0.0444   20 0.00993 0.532 -0.78
C57BL/6ByJ m 0.108 0.0369   20 0.00826 0.342 0.05, 0.2 -0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 f 0.0842 0.0093 0.1025 0.0659
129P3.B6By-Chr1 m 0.1021 0.0093 0.1204 0.0838
129P3.B6By-Chr2 f 0.125 0.0203 0.1649 0.0851
129P3.B6By-Chr2 m 0.106 0.0181 0.1417 0.0703
129P3.B6By-Chr7 f 0.089 0.0091 0.1069 0.0711
129P3.B6By-Chr7 m 0.121 0.0091 0.1389 0.1031
129P3.B6By-Chr9 f 0.1 0.0128 0.1253 0.0747
129P3.B6By-Chr9 m 0.095 0.0128 0.1203 0.0697
129P3/J f 0.1013 0.0083 0.1176 0.0849
129P3/J m 0.1186 0.0108 0.1399 0.0972
B6By.129P3-Chr2 f 0.0963 0.0101 0.1162 0.0763
B6By.129P3-Chr2 m 0.1086 0.0108 0.1299 0.0872
B6By.129P3-Chr7 f 0.086 0.0091 0.1039 0.0681
B6By.129P3-Chr7 m 0.129 0.0091 0.1469 0.1111
B6By.129P3-Chr9 f 0.082 0.0091 0.0999 0.0641
B6By.129P3-Chr9 m 0.0889 0.0093 0.1073 0.0706
C57BL/6ByJ f 0.0835 0.0091 0.1014 0.0656
C57BL/6ByJ m 0.108 0.0091 0.1259 0.0901


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 both 0.0932 0.0066 0.1061 0.0802
129P3.B6By-Chr2 both 0.1155 0.0136 0.1423 0.0887
129P3.B6By-Chr7 both 0.105 0.0064 0.1176 0.0924
129P3.B6By-Chr9 both 0.0975 0.0091 0.1154 0.0796
129P3/J both 0.1099 0.0068 0.1233 0.0965
B6By.129P3-Chr2 both 0.1024 0.0074 0.117 0.0878
B6By.129P3-Chr7 both 0.1075 0.0064 0.1201 0.0949
B6By.129P3-Chr9 both 0.0855 0.0065 0.0983 0.0727
C57BL/6ByJ both 0.0958 0.0064 0.1084 0.0831




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA