Phenotype measure:   Reed2   gonadal_fat

ID, description, units MPD:53111   gonadal_fat   gonadal fat pad weight   [g]
Data set, strains Reed2   B6.129 and 129.B6 consomic w/par   9 strains     sex: both     age: 26wks
Procedure fat pad weights
Ontology mappings

  STRAIN COMPARISON PLOT
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Reed2 - gonadal fat pad weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.372   g 0.369   g
Median of the strain means0.378   g 0.393   g
SD of the strain means± 0.109 ± 0.0773
Coefficient of variation (CV)0.293 0.209
Min–max range of strain means0.197   –   0.550   g 0.268   –   0.468   g
Mean sample size per strain17.9   mice 16.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0151 0.0151 0.6147 0.4337
strain 8 1.5972 0.1997 8.1268 < 0.0001
sex:strain 8 0.3222 0.0403 1.6394 0.1135
Residuals 278 6.8296 0.0246


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3.B6By-Chr1 f 0.197 0.0487   19 0.0112 0.247 0.12, 0.28 -1.6
129P3.B6By-Chr1 m 0.268 0.0668   18 0.0157 0.249 0.16, 0.41 -1.31
129P3.B6By-Chr2 f 0.55 0.347   4 0.174 0.631 0.31, 1.05 1.64
129P3.B6By-Chr2 m 0.468 0.11   5 0.0491 0.235 0.33, 0.62 1.28
129P3.B6By-Chr7 f 0.387 0.143   20 0.0319 0.369 0.02, 0.62 0.14
129P3.B6By-Chr7 m 0.449 0.174   20 0.0389 0.388 0.06, 0.82 1.03
129P3.B6By-Chr9 f 0.287 0.139   10 0.044 0.485 0.14, 0.55 -0.78
129P3.B6By-Chr9 m 0.289 0.121   11 0.0365 0.419 0.13, 0.52 -1.04
129P3/J f 0.319 0.128   24 0.0261 0.4 0.06, 0.57 -0.48
129P3/J m 0.279 0.133   14 0.0356 0.476 0.03, 0.52 -1.17
B6By.129P3-Chr2 f 0.429 0.137   15 0.0354 0.319 0.17, 0.66 0.53
B6By.129P3-Chr2 m 0.338 0.141   15 0.0365 0.418 0.15, 0.68 -0.41
B6By.129P3-Chr7 f 0.305 0.111   20 0.0248 0.363 0.04, 0.53 -0.61
B6By.129P3-Chr7 m 0.393 0.14   20 0.0314 0.357 0.22, 0.7 0.3
B6By.129P3-Chr9 f 0.493 0.211   20 0.0472 0.428 0.17, 0.89 1.11
B6By.129P3-Chr9 m 0.419 0.222   19 0.0509 0.53 0.15, 0.98 0.64
C57BL/6ByJ f 0.378 0.2   21 0.0437 0.53 0.14, 0.85 0.06
C57BL/6ByJ m 0.422 0.191   21 0.0416 0.452 0.12, 0.89 0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 f 0.1974 0.036 0.2682 0.1266
129P3.B6By-Chr1 m 0.2683 0.0369 0.3411 0.1956
129P3.B6By-Chr2 f 0.55 0.0784 0.7043 0.3957
129P3.B6By-Chr2 m 0.468 0.0701 0.606 0.33
129P3.B6By-Chr7 f 0.3865 0.035 0.4555 0.3175
129P3.B6By-Chr7 m 0.449 0.035 0.518 0.38
129P3.B6By-Chr9 f 0.287 0.0496 0.3846 0.1894
129P3.B6By-Chr9 m 0.2891 0.0473 0.3821 0.1961
129P3/J f 0.3192 0.032 0.3821 0.2562
129P3/J m 0.2793 0.0419 0.3617 0.1968
B6By.129P3-Chr2 f 0.4287 0.0405 0.5083 0.349
B6By.129P3-Chr2 m 0.338 0.0405 0.4177 0.2583
B6By.129P3-Chr7 f 0.305 0.035 0.374 0.236
B6By.129P3-Chr7 m 0.3935 0.035 0.4625 0.3245
B6By.129P3-Chr9 f 0.493 0.035 0.562 0.424
B6By.129P3-Chr9 m 0.4189 0.036 0.4897 0.3482
C57BL/6ByJ f 0.3776 0.0342 0.4449 0.3103
C57BL/6ByJ m 0.4224 0.0342 0.4897 0.3551


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 both 0.2329 0.0258 0.2836 0.1821
129P3.B6By-Chr2 both 0.509 0.0526 0.6125 0.4055
129P3.B6By-Chr7 both 0.4177 0.0248 0.4665 0.369
129P3.B6By-Chr9 both 0.288 0.0342 0.3555 0.2206
129P3/J both 0.2992 0.0264 0.3511 0.2473
B6By.129P3-Chr2 both 0.3833 0.0286 0.4397 0.327
B6By.129P3-Chr7 both 0.3492 0.0248 0.398 0.3005
B6By.129P3-Chr9 both 0.456 0.0251 0.5054 0.4066
C57BL/6ByJ both 0.4 0.0242 0.4476 0.3524




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA