Project measure / variable:   Reed2   pct_fat

ID, description, units MPD:53107   pct_fat   percent body fat, head excluded   [%]  
Data set, strains Reed2   B6.129 and 129.B6 consomic w/par   9 strains     sex: both     age: 26wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Reed2 - percent body fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means18.7   % 18.8   %
Median of the strain means17.7   % 18.7   %
SD of the strain means± 2.21 ± 1.36
Coefficient of variation (CV)0.118 0.0726
Min–max range of strain means16.3   –   22.6   % 17.3   –   21.8   %
Mean sample size per strain17.9   mice 16.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.1844 1.1844 0.1225 0.7266
strain 8 608.7135 76.0892 7.8674 < 0.0001
sex:strain 8 339.4255 42.4282 4.3869 0.0001
Residuals 278 2688.676 9.6715


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3.B6By-Chr1 f 16.8 2.67   19 0.613 0.159 12.6, 23.1 -0.85
129P3.B6By-Chr1 m 19.0 2.47   19 0.566 0.13 14.3, 23.2 0.15
129P3.B6By-Chr2 f 19.3 2.63   4 1.31 0.136 16.9, 22.0 0.29
129P3.B6By-Chr2 m 19.5 1.67   5 0.746 0.0854 18.0, 22.3 0.52
129P3.B6By-Chr7 f 21.0 2.02   19 0.462 0.096 16.0, 26.0 1.06
129P3.B6By-Chr7 m 21.8 2.09   19 0.48 0.0961 18.6, 25.7 2.21
129P3.B6By-Chr9 f 16.8 2.72   10 0.861 0.162 11.5, 20.6 -0.85
129P3.B6By-Chr9 m 18.7 3.42   11 1.03 0.183 13.5, 25.6 -0.07
129P3/J f 17.7 2.7   24 0.551 0.152 12.0, 23.6 -0.44
129P3/J m 19.3 3.13   14 0.837 0.162 15.1, 24.8 0.37
B6By.129P3-Chr2 f 22.6 4.29   16 1.07 0.19 14.7, 30.1 1.78
B6By.129P3-Chr2 m 18.0 2.08   15 0.538 0.115 14.9, 22.3 -0.58
B6By.129P3-Chr7 f 17.3 3.75   20 0.838 0.217 11.0, 24.0 -0.62
B6By.129P3-Chr7 m 17.3 2.43   20 0.543 0.14 12.1, 21.4 -1.09
B6By.129P3-Chr9 f 20.2 3.86   20 0.864 0.191 13.5, 30.3 0.69
B6By.129P3-Chr9 m 17.7 3.79   19 0.87 0.214 12.7, 25.7 -0.8
C57BL/6ByJ f 16.3 4.28   21 0.933 0.262 10.4, 27.0 -1.07
C57BL/6ByJ m 17.8 2.86   21 0.625 0.161 12.0, 23.1 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 f 16.8316 0.7135 18.2361 15.4271
129P3.B6By-Chr1 m 19.0053 0.7135 20.4097 17.6008
129P3.B6By-Chr2 f 19.3 1.555 22.361 16.239
129P3.B6By-Chr2 m 19.54 1.3908 22.2778 16.8022
129P3.B6By-Chr7 f 21.0053 0.7135 22.4097 19.6008
129P3.B6By-Chr7 m 21.7737 0.7135 23.1782 20.3692
129P3.B6By-Chr9 f 16.79 0.9834 18.7259 14.8541
129P3.B6By-Chr9 m 18.6909 0.9377 20.5367 16.8451
129P3/J f 17.75 0.6348 18.9996 16.5004
129P3/J m 19.35 0.8312 20.9862 17.7138
B6By.129P3-Chr2 f 22.6 0.7775 24.1305 21.0695
B6By.129P3-Chr2 m 18.04 0.803 19.6207 16.4593
B6By.129P3-Chr7 f 17.28 0.6954 18.6489 15.9111
B6By.129P3-Chr7 m 17.34 0.6954 18.7089 15.9711
B6By.129P3-Chr9 f 20.245 0.6954 21.6139 18.8761
B6By.129P3-Chr9 m 17.6947 0.7135 19.0992 16.2903
C57BL/6ByJ f 16.2952 0.6786 17.6312 14.9593
C57BL/6ByJ m 17.8048 0.6786 19.1407 16.4688


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 both 17.9184 0.5045 18.9115 16.9253
129P3.B6By-Chr2 both 19.42 1.0431 21.4734 17.3666
129P3.B6By-Chr7 both 21.3895 0.5045 22.3826 20.3964
129P3.B6By-Chr9 both 17.7405 0.6794 19.0779 16.403
129P3/J both 18.55 0.5229 19.5794 17.5206
B6By.129P3-Chr2 both 20.32 0.5588 21.4201 19.2199
B6By.129P3-Chr7 both 17.31 0.4917 18.278 16.342
B6By.129P3-Chr9 both 18.9699 0.4981 19.9505 17.9892
C57BL/6ByJ both 17.05 0.4799 17.9946 16.1054




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA