Project measure / variable:   Reed2   fat

ID, description, units MPD:53106   fat   total body fat tissue mass, head excluded   [g]  
Data set, strains Reed2   B6.129 and 129.B6 consomic w/par   9 strains     sex: both     age: 26wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Reed2 - total body fat tissue mass, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means4.33   g 5.01   g
Median of the strain means4.28   g 5.14   g
SD of the strain means± 0.463 ± 0.489
Coefficient of variation (CV)0.107 0.0975
Min–max range of strain means3.66   –   5.02   g 4.25   –   5.70   g
Mean sample size per strain18.0   mice 16.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 40.2638 40.2638 34.4198 < 0.0001
strain 8 23.1292 2.8911 2.4715 0.0133
sex:strain 8 27.6355 3.4544 2.953 0.0035
Residuals 280 327.5399 1.1698


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3.B6By-Chr1 f 3.66 0.71   19 0.163 0.194 2.7, 5.5 -1.45
129P3.B6By-Chr1 m 4.64 0.959   19 0.22 0.207 2.6, 6.1 -0.77
129P3.B6By-Chr2 f 5.02 1.09   4 0.544 0.216 3.9, 6.1 1.48
129P3.B6By-Chr2 m 5.7 0.748   5 0.335 0.131 5.0, 6.8 1.4
129P3.B6By-Chr7 f 4.19 0.843   20 0.189 0.201 1.9, 5.6 -0.31
129P3.B6By-Chr7 m 5.14 1.0   20 0.224 0.195 2.4, 6.8 0.26
129P3.B6By-Chr9 f 4.28 0.916   10 0.29 0.214 2.9, 5.4 -0.12
129P3.B6By-Chr9 m 5.27 1.42   11 0.427 0.269 3.3, 8.1 0.52
129P3/J f 3.94 0.731   24 0.149 0.185 2.3, 5.6 -0.85
129P3/J m 4.64 1.17   14 0.313 0.252 2.6, 6.4 -0.77
B6By.129P3-Chr2 f 4.94 1.28   16 0.32 0.259 2.6, 7.3 1.31
B6By.129P3-Chr2 m 4.25 0.655   15 0.169 0.154 3.4, 5.5 -1.56
B6By.129P3-Chr7 f 4.49 1.34   20 0.299 0.298 2.3, 7.3 0.34
B6By.129P3-Chr7 m 5.46 1.01   20 0.225 0.185 3.5, 7.6 0.91
B6By.129P3-Chr9 f 4.56 1.3   20 0.29 0.284 2.5, 7.7 0.49
B6By.129P3-Chr9 m 4.63 1.41   19 0.324 0.304 3.0, 8.2 -0.79
C57BL/6ByJ f 3.92 1.27   21 0.276 0.323 2.3, 7.1 -0.89
C57BL/6ByJ m 5.4 1.06   21 0.23 0.195 3.3, 7.0 0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 f 3.6579 0.2481 4.1463 3.1695
129P3.B6By-Chr1 m 4.6421 0.2481 5.1305 4.1537
129P3.B6By-Chr2 f 5.025 0.5408 6.0895 3.9605
129P3.B6By-Chr2 m 5.7 0.4837 6.6521 4.7479
129P3.B6By-Chr7 f 4.19 0.2418 4.6661 3.7139
129P3.B6By-Chr7 m 5.14 0.2418 5.6161 4.6639
129P3.B6By-Chr9 f 4.28 0.342 4.9533 3.6067
129P3.B6By-Chr9 m 5.2727 0.3261 5.9147 4.6308
129P3/J f 3.9417 0.2208 4.3763 3.5071
129P3/J m 4.6357 0.2891 5.2047 4.0667
B6By.129P3-Chr2 f 4.9375 0.2704 5.4698 4.4052
B6By.129P3-Chr2 m 4.2533 0.2793 4.803 3.7036
B6By.129P3-Chr7 f 4.49 0.2418 4.9661 4.0139
B6By.129P3-Chr7 m 5.46 0.2418 5.9361 4.9839
B6By.129P3-Chr9 f 4.565 0.2418 5.0411 4.0889
B6By.129P3-Chr9 m 4.6316 0.2481 5.12 4.1431
C57BL/6ByJ f 3.9238 0.236 4.3884 3.4592
C57BL/6ByJ m 5.4 0.236 5.8646 4.9354


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129P3.B6By-Chr1 both 4.15 0.1755 4.4954 3.8046
129P3.B6By-Chr2 both 5.3625 0.3628 6.0766 4.6484
129P3.B6By-Chr7 both 4.665 0.171 5.0016 4.3284
129P3.B6By-Chr9 both 4.7764 0.2363 5.2415 4.3112
129P3/J both 4.2887 0.1819 4.6467 3.9307
B6By.129P3-Chr2 both 4.5954 0.1944 4.978 4.2128
B6By.129P3-Chr7 both 4.975 0.171 5.3116 4.6384
B6By.129P3-Chr9 both 4.5983 0.1732 4.9393 4.2573
C57BL/6ByJ both 4.6619 0.1669 4.9904 4.3334




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA