Phenotype measure:   Chen1   iNKT_pb_thy_ratio

ID, description, units MPD:52308   iNKT_pb_thy_ratio   peripheral blood to thymus ratio of invariant NK T cells   [ratio]
Data set, strains Chen1   inbred   38 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Chen1 - peripheral blood to thymus ratio of invariant NK T cells



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested38 strains
Mean of the strain means0.344   ratio
Median of the strain means0.149   ratio
SD of the strain means± 0.502
Coefficient of variation (CV)1.46
Min–max range of strain means0.0300   –   2.74   ratio
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 37 37.6864 1.0186 4.271 < 0.0001
Residuals 122 29.0947 0.2385


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.695 0.0975   4 0.0487 0.14 0.6, 0.83 0.7
129X1/SvJ m 0.435 0.129   4 0.0644 0.296 0.27, 0.58 0.18
A/J m 0.055 0.01   4 0.005 0.182 0.04, 0.06 -0.58
AKR/J m 0.1 0.0294   4 0.0147 0.294 0.07, 0.14 -0.49
ALR/LtJ m 0.275 0.1   4 0.0501 0.364 0.18, 0.4 -0.14
BALB/cByJ m 0.208 0.0723   4 0.0361 0.348 0.14, 0.31 -0.27
BALB/cJ m 0.0425 0.005   4 0.0025 0.118 0.04, 0.05 -0.6
BPL/1J m 0.762 0.204   4 0.102 0.268 0.52, 0.96 0.83
BTBR T+ Itpr3tf/J m 0.175 0.0695   4 0.0348 0.397 0.11, 0.24 -0.34
BUB/BnJ m 0.075 0.0507   4 0.0253 0.675 0.04, 0.15 -0.54
C3H/HeJ m 0.03 0.0   4 0.0 0.0 0.03, 0.03 -0.63
C57BL/10J m 0.04 0.0122   5 0.00548 0.306 0.03, 0.06 -0.61
C57BL/6J m 0.06 0.0216   4 0.0108 0.36 0.04, 0.09 -0.57
C57BLKS/J m 0.055 0.00577   4 0.00289 0.105 0.05, 0.06 -0.58
C57L/J m 0.362 0.0701   5 0.0314 0.194 0.28, 0.46 0.04
CAST/EiJ m 1.28 0.847   4 0.423 0.66 0.54, 2.44 1.86
CBA/J m 0.113 0.0222   4 0.0111 0.197 0.09, 0.14 -0.46
DBA/1LacJ m 0.0875 0.0377   4 0.0189 0.431 0.05, 0.12 -0.51
DBA/2J m 0.04 0.0   5 0.0 0.0 0.04, 0.04 -0.61
FVB/NJ m 0.0725 0.005   4 0.0025 0.069 0.07, 0.08 -0.54
ICR/HaJ m 0.133 0.015   4 0.0075 0.113 0.12, 0.15 -0.42
KK/HlJ m 0.356 0.0856   5 0.0383 0.24 0.28, 0.48 0.02
LP/J m 0.168 0.0486   4 0.0243 0.29 0.12, 0.23 -0.35
MOLF/EiJ m 0.595 0.199   4 0.0997 0.335 0.39, 0.79 0.5
MRL/MpJ m 0.148 0.0192   5 0.0086 0.13 0.12, 0.17 -0.39
MSM/MsJ m 0.475 0.195   4 0.0975 0.411 0.26, 0.65 0.26
NOD/LtDVS m 0.122 0.0239   5 0.0107 0.196 0.09, 0.15 -0.44
NON/ShiLtJ m 0.09 0.0141   4 0.00707 0.157 0.07, 0.1 -0.51
NZB/BlNJ m 0.685 0.159   4 0.0797 0.233 0.48, 0.86 0.68
NZO/HlLtJ m 0.15 0.0432   4 0.0216 0.288 0.09, 0.19 -0.39
NZW/LacJ m 0.108 0.0287   4 0.0144 0.267 0.07, 0.13 -0.47
PL/J m 0.0875 0.00957   4 0.00479 0.109 0.08, 0.1 -0.51
PWD/PhJ m 1.18 0.352   4 0.176 0.3 0.81, 1.65 1.67
SJL/J m 0.412 0.0912   5 0.0408 0.221 0.31, 0.51 0.14
SM/J m 0.076 0.0182   5 0.00812 0.239 0.05, 0.1 -0.53
SPRET/EiJ m 2.74 2.92   4 1.46 1.07 0.77, 7.0 4.77
SWR/J m 0.15 0.0408   4 0.0204 0.272 0.1, 0.2 -0.39
WSB/EiJ m 0.435 0.262   4 0.131 0.602 0.11, 0.72 0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.695 0.2442 1.1784 0.2116
129X1/SvJ m 0.435 0.2442 0.9184 0.0
A/J m 0.055 0.2442 0.5384 0.0
AKR/J m 0.1 0.2442 0.5834 0.0
ALR/LtJ m 0.275 0.2442 0.7584 0.0
BALB/cByJ m 0.2075 0.2442 0.6909 0.0
BALB/cJ m 0.0425 0.2442 0.5259 0.0
BPL/1J m 0.7625 0.2442 1.2459 0.2791
BTBR T+ Itpr3tf/J m 0.175 0.2442 0.6584 0.0
BUB/BnJ m 0.075 0.2442 0.5584 0.0
C3H/HeJ m 0.03 0.2442 0.5134 0.0
C57BL/10J m 0.04 0.2184 0.4723 0.0
C57BL/6J m 0.06 0.2442 0.5434 0.0
C57BLKS/J m 0.055 0.2442 0.5384 0.0
C57L/J m 0.362 0.2184 0.7943 0.0
CAST/EiJ m 1.2825 0.2442 1.7659 0.7991
CBA/J m 0.1125 0.2442 0.5959 0.0
DBA/1LacJ m 0.0875 0.2442 0.5709 0.0
DBA/2J m 0.04 0.2184 0.4723 0.0
FVB/NJ m 0.0725 0.2442 0.5559 0.0
ICR/HaJ m 0.1325 0.2442 0.6159 0.0
KK/HlJ m 0.356 0.2184 0.7883 0.0
LP/J m 0.1675 0.2442 0.6509 0.0
MOLF/EiJ m 0.595 0.2442 1.0784 0.1116
MRL/MpJ m 0.148 0.2184 0.5803 0.0
MSM/MsJ m 0.475 0.2442 0.9584 0.0
NOD/LtDVS m 0.122 0.2184 0.5543 0.0
NON/ShiLtJ m 0.09 0.2442 0.5734 0.0
NZB/BlNJ m 0.685 0.2442 1.1684 0.2016
NZO/HlLtJ m 0.15 0.2442 0.6334 0.0
NZW/LacJ m 0.1075 0.2442 0.5909 0.0
PL/J m 0.0875 0.2442 0.5709 0.0
PWD/PhJ m 1.175 0.2442 1.6584 0.6916
SJL/J m 0.412 0.2184 0.8443 0.0
SM/J m 0.076 0.2184 0.5083 0.0
SPRET/EiJ m 2.7425 0.2442 3.2259 2.2591
SWR/J m 0.15 0.2442 0.6334 0.0
WSB/EiJ m 0.435 0.2442 0.9184 0.0




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.