Phenotype measure:   Chen1   pct_iNKT_T_thymus

ID, description, units MPD:52306   pct_iNKT_T_thymus   percentage of total TCRβhi cells that are invariant NK T cells, thymus   [%]
Data set, strains Chen1   inbred   38 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Chen1 - percentage of total TCRβhi cells that are invariant NK T cells, thymus



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested38 strains
Mean of the strain means4.29   %
Median of the strain means3.70   %
SD of the strain means± 3.09
Coefficient of variation (CV)0.721
Min–max range of strain means0.0245   –   9.39   %
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 37 1468.5467 39.6905 75.6965 < 0.0001
Residuals 122 63.9691 0.5243


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.66 0.158   4 0.0788 0.0948 1.51, 1.88 -0.85
129X1/SvJ m 1.5 0.161   4 0.0805 0.108 1.26, 1.62 -0.9
A/J m 7.62 1.63   4 0.816 0.214 6.18, 9.73 1.08
AKR/J m 4.25 0.56   4 0.28 0.132 3.6, 4.76 -0.01
ALR/LtJ m 1.04 0.268   4 0.134 0.257 0.77, 1.41 -1.05
BALB/cByJ m 5.98 0.63   4 0.315 0.105 5.1, 6.6 0.55
BALB/cJ m 9.01 0.563   4 0.281 0.0624 8.39, 9.69 1.53
BPL/1J m 4.36 0.704   4 0.352 0.162 3.77, 5.29 0.02
BTBR T+ Itpr3tf/J m 2.13 0.369   4 0.185 0.173 1.66, 2.43 -0.7
BUB/BnJ m 9.25 1.83   4 0.917 0.198 6.86, 11.3 1.6
C3H/HeJ m 8.39 0.77   4 0.385 0.0918 7.81, 9.51 1.33
C57BL/10J m 6.61 0.707   5 0.316 0.107 5.94, 7.35 0.75
C57BL/6J m 6.25 0.75   4 0.375 0.12 5.26, 6.97 0.63
C57BLKS/J m 5.29 0.388   4 0.194 0.0734 4.96, 5.85 0.32
C57L/J m 2.62 0.754   5 0.337 0.287 2.08, 3.86 -0.54
CAST/EiJ m 0.0675 0.0182   4 0.00908 0.269 0.045, 0.087 -1.37
CBA/J m 9.39 1.15   4 0.574 0.122 8.31, 11.0 1.65
DBA/1LacJ m 6.78 0.736   4 0.368 0.109 5.89, 7.44 0.81
DBA/2J m 7.49 0.475   5 0.213 0.0635 6.78, 8.02 1.04
FVB/NJ m 6.17 0.802   4 0.401 0.13 5.08, 7.01 0.61
ICR/HaJ m 7.65 0.37   4 0.185 0.0483 7.38, 8.19 1.09
KK/HlJ m 3.14 0.62   5 0.277 0.198 2.23, 3.93 -0.37
LP/J m 3.23 1.14   4 0.57 0.353 2.02, 4.77 -0.34
MOLF/EiJ m 0.383 0.116   4 0.0579 0.303 0.27, 0.54 -1.26
MRL/MpJ m 1.6 0.108   5 0.0484 0.0677 1.48, 1.7 -0.87
MSM/MsJ m 0.0245 0.00957   4 0.00479 0.391 0.016, 0.038 -1.38
NOD/LtDVS m 2.07 0.092   5 0.0412 0.0444 1.94, 2.17 -0.72
NON/ShiLtJ m 9.22 0.8   4 0.4 0.0867 8.29, 9.98 1.6
NZB/BlNJ m 2.65 0.297   4 0.149 0.112 2.33, 3.02 -0.53
NZO/HlLtJ m 3.92 0.458   4 0.229 0.117 3.42, 4.47 -0.12
NZW/LacJ m 7.76 1.07   4 0.533 0.137 7.13, 9.35 1.12
PL/J m 2.54 0.27   4 0.135 0.106 2.23, 2.78 -0.57
PWD/PhJ m 0.031 0.0104   4 0.00518 0.334 0.017, 0.042 -1.38
SJL/J m 0.764 0.0891   5 0.0398 0.117 0.64, 0.84 -1.14
SM/J m 7.33 1.17   5 0.524 0.16 6.18, 8.84 0.98
SPRET/EiJ m 0.058 0.034   4 0.017 0.587 0.011, 0.088 -1.37
SWR/J m 3.47 1.03   4 0.514 0.296 2.37, 4.83 -0.26
WSB/EiJ m 1.24 0.971   4 0.485 0.781 0.54, 2.67 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.6625 0.3621 2.3792 0.9458
129X1/SvJ m 1.495 0.3621 2.2117 0.7783
A/J m 7.615 0.3621 8.3317 6.8983
AKR/J m 4.255 0.3621 4.9717 3.5383
ALR/LtJ m 1.045 0.3621 1.7617 0.3283
BALB/cByJ m 5.9775 0.3621 6.6942 5.2608
BALB/cJ m 9.0125 0.3621 9.7292 8.2958
BPL/1J m 4.36 0.3621 5.0767 3.6433
BTBR T+ Itpr3tf/J m 2.13 0.3621 2.8467 1.4133
BUB/BnJ m 9.25 0.3621 9.9667 8.5333
C3H/HeJ m 8.3925 0.3621 9.1092 7.6758
C57BL/10J m 6.612 0.3238 7.2531 5.9709
C57BL/6J m 6.25 0.3621 6.9667 5.5333
C57BLKS/J m 5.2875 0.3621 6.0042 4.5708
C57L/J m 2.624 0.3238 3.2651 1.9829
CAST/EiJ m 0.0675 0.3621 0.7842 0.0
CBA/J m 9.3925 0.3621 10.1092 8.6758
DBA/1LacJ m 6.7825 0.3621 7.4992 6.0658
DBA/2J m 7.49 0.3238 8.1311 6.8489
FVB/NJ m 6.17 0.3621 6.8867 5.4533
ICR/HaJ m 7.655 0.3621 8.3717 6.9383
KK/HlJ m 3.138 0.3238 3.7791 2.4969
LP/J m 3.23 0.3621 3.9467 2.5133
MOLF/EiJ m 0.3825 0.3621 1.0992 0.0
MRL/MpJ m 1.598 0.3238 2.2391 0.9569
MSM/MsJ m 0.0245 0.3621 0.7412 0.0
NOD/LtDVS m 2.072 0.3238 2.7131 1.4309
NON/ShiLtJ m 9.2225 0.3621 9.9392 8.5058
NZB/BlNJ m 2.6475 0.3621 3.3642 1.9308
NZO/HlLtJ m 3.92 0.3621 4.6367 3.2033
NZW/LacJ m 7.7575 0.3621 8.4742 7.0408
PL/J m 2.545 0.3621 3.2617 1.8283
PWD/PhJ m 0.031 0.3621 0.7477 0.0
SJL/J m 0.764 0.3238 1.4051 0.1229
SM/J m 7.334 0.3238 7.9751 6.6929
SPRET/EiJ m 0.058 0.3621 0.7747 0.0
SWR/J m 3.4725 0.3621 4.1892 2.7558
WSB/EiJ m 1.2425 0.3621 1.9592 0.5258




  GWAS USING LINEAR MIXED MODELS