Phenotype measure:   Chen1   iNKT_pb_spl_ratio

ID, description, units MPD:52305   iNKT_pb_spl_ratio   peripheral blood to spleen ratio of invariant NK T cells   [ratio]
Data set, strains Chen1   inbred   38 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Chen1 - peripheral blood to spleen ratio of invariant NK T cells



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested38 strains
Mean of the strain means0.396   ratio
Median of the strain means0.332   ratio
SD of the strain means± 0.232
Coefficient of variation (CV)0.587
Min–max range of strain means0.128   –   0.968   ratio
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 37 8.5117 0.23 15.192 < 0.0001
Residuals 122 1.8474 0.0151


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.583 0.0574   4 0.0287 0.0985 0.53, 0.65 0.8
129X1/SvJ m 0.348 0.065   4 0.0325 0.187 0.29, 0.44 -0.21
A/J m 0.212 0.034   4 0.017 0.16 0.18, 0.26 -0.79
AKR/J m 0.372 0.133   4 0.0664 0.356 0.19, 0.5 -0.1
ALR/LtJ m 0.52 0.205   4 0.103 0.394 0.37, 0.81 0.53
BALB/cByJ m 0.465 0.0755   4 0.0377 0.162 0.38, 0.56 0.3
BALB/cJ m 0.33 0.0294   4 0.0147 0.0892 0.3, 0.36 -0.28
BPL/1J m 0.877 0.153   4 0.0766 0.175 0.7, 1.07 2.07
BTBR T+ Itpr3tf/J m 0.215 0.0592   4 0.0296 0.275 0.17, 0.3 -0.78
BUB/BnJ m 0.228 0.0974   4 0.0487 0.428 0.12, 0.35 -0.72
C3H/HeJ m 0.23 0.0424   4 0.0212 0.184 0.19, 0.28 -0.71
C57BL/10J m 0.26 0.0283   5 0.0126 0.109 0.24, 0.3 -0.58
C57BL/6J m 0.158 0.0665   4 0.0333 0.422 0.1, 0.25 -1.02
C57BLKS/J m 0.432 0.0435   4 0.0217 0.101 0.39, 0.49 0.15
C57L/J m 0.948 0.126   5 0.0563 0.133 0.82, 1.09 2.37
CAST/EiJ m 0.128 0.0556   4 0.0278 0.436 0.06, 0.19 -1.15
CBA/J m 0.47 0.0245   4 0.0122 0.0521 0.44, 0.5 0.32
DBA/1LacJ m 0.242 0.0499   4 0.025 0.206 0.19, 0.29 -0.66
DBA/2J m 0.212 0.0228   5 0.0102 0.108 0.19, 0.24 -0.79
FVB/NJ m 0.155 0.0129   4 0.00645 0.0833 0.14, 0.17 -1.04
ICR/HaJ m 0.312 0.0359   4 0.018 0.115 0.28, 0.36 -0.36
KK/HlJ m 0.712 0.0614   5 0.0275 0.0862 0.65, 0.79 1.36
LP/J m 0.333 0.0492   4 0.0246 0.148 0.27, 0.39 -0.27
MOLF/EiJ m 0.25 0.0408   4 0.0204 0.163 0.21, 0.29 -0.63
MRL/MpJ m 0.19 0.0316   5 0.0141 0.166 0.14, 0.22 -0.89
MSM/MsJ m 0.713 0.389   4 0.195 0.546 0.34, 1.18 1.36
NOD/LtDVS m 0.35 0.0742   5 0.0332 0.212 0.26, 0.43 -0.2
NON/ShiLtJ m 0.208 0.034   4 0.017 0.164 0.18, 0.25 -0.81
NZB/BlNJ m 0.968 0.249   4 0.125 0.258 0.76, 1.26 2.46
NZO/HlLtJ m 0.283 0.11   4 0.055 0.389 0.17, 0.4 -0.49
NZW/LacJ m 0.343 0.0206   4 0.0103 0.0602 0.32, 0.37 -0.23
PL/J m 0.258 0.0126   4 0.00629 0.0489 0.24, 0.27 -0.59
PWD/PhJ m 0.887 0.303   4 0.152 0.342 0.57, 1.3 2.11
SJL/J m 0.346 0.0817   5 0.0366 0.236 0.24, 0.46 -0.21
SM/J m 0.306 0.0518   5 0.0232 0.169 0.23, 0.36 -0.39
SPRET/EiJ m 0.615 0.328   4 0.164 0.533 0.31, 1.08 0.94
SWR/J m 0.21 0.0283   4 0.0141 0.135 0.19, 0.25 -0.8
WSB/EiJ m 0.378 0.0881   4 0.044 0.233 0.29, 0.48 -0.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.5825 0.0615 0.7043 0.4607
129X1/SvJ m 0.3475 0.0615 0.4693 0.2257
A/J m 0.2125 0.0615 0.3343 0.0907
AKR/J m 0.3725 0.0615 0.4943 0.2507
ALR/LtJ m 0.52 0.0615 0.6418 0.3982
BALB/cByJ m 0.465 0.0615 0.5868 0.3432
BALB/cJ m 0.33 0.0615 0.4518 0.2082
BPL/1J m 0.8775 0.0615 0.9993 0.7557
BTBR T+ Itpr3tf/J m 0.215 0.0615 0.3368 0.0932
BUB/BnJ m 0.2275 0.0615 0.3493 0.1057
C3H/HeJ m 0.23 0.0615 0.3518 0.1082
C57BL/10J m 0.26 0.055 0.3689 0.1511
C57BL/6J m 0.1575 0.0615 0.2793 0.0357
C57BLKS/J m 0.4325 0.0615 0.5543 0.3107
C57L/J m 0.948 0.055 1.0569 0.8391
CAST/EiJ m 0.1275 0.0615 0.2493 0.0057
CBA/J m 0.47 0.0615 0.5918 0.3482
DBA/1LacJ m 0.2425 0.0615 0.3643 0.1207
DBA/2J m 0.212 0.055 0.3209 0.1031
FVB/NJ m 0.155 0.0615 0.2768 0.0332
ICR/HaJ m 0.3125 0.0615 0.4343 0.1907
KK/HlJ m 0.712 0.055 0.8209 0.6031
LP/J m 0.3325 0.0615 0.4543 0.2107
MOLF/EiJ m 0.25 0.0615 0.3718 0.1282
MRL/MpJ m 0.19 0.055 0.2989 0.0811
MSM/MsJ m 0.7125 0.0615 0.8343 0.5907
NOD/LtDVS m 0.35 0.055 0.4589 0.2411
NON/ShiLtJ m 0.2075 0.0615 0.3293 0.0857
NZB/BlNJ m 0.9675 0.0615 1.0893 0.8457
NZO/HlLtJ m 0.2825 0.0615 0.4043 0.1607
NZW/LacJ m 0.3425 0.0615 0.4643 0.2207
PL/J m 0.2575 0.0615 0.3793 0.1357
PWD/PhJ m 0.8875 0.0615 1.0093 0.7657
SJL/J m 0.346 0.055 0.4549 0.2371
SM/J m 0.306 0.055 0.4149 0.1971
SPRET/EiJ m 0.615 0.0615 0.7368 0.4932
SWR/J m 0.21 0.0615 0.3318 0.0882
WSB/EiJ m 0.3775 0.0615 0.4993 0.2557




  GWAS USING LINEAR MIXED MODELS