Phenotype measure:   Chen1   pct_iNKT_CD4_spleen

ID, description, units MPD:52304   pct_iNKT_CD4_spleen   percentage of invariant NK T cells that express CD4, spleen   [%]
Data set, strains Chen1   inbred   35 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Chen1 - percentage of invariant NK T cells that express CD4, spleen



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested35 strains
Mean of the strain means76.9   %
Median of the strain means82.0   %
SD of the strain means± 15.2
Coefficient of variation (CV)0.198
Min–max range of strain means25.3   –   94.5   %
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 34 32999.7545 970.581 78.4528 < 0.0001
Residuals 113 1397.983 12.3715


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 90.1 0.81   4 0.405 0.009 89.0, 90.9 0.87
129X1/SvJ m 83.8 2.05   4 1.03 0.0245 81.0, 85.7 0.45
A/J m 94.5 0.888   4 0.444 0.0094 93.4, 95.3 1.16
AKR/J m 67.0 5.21   4 2.6 0.0778 62.7, 73.6 -0.65
ALR/LtJ m 73.2 6.31   4 3.16 0.0862 66.7, 80.7 -0.24
BALB/cByJ m 92.7 0.698   4 0.349 0.00753 92.1, 93.4 1.04
BALB/cJ m 89.8 0.574   4 0.287 0.00639 89.0, 90.3 0.85
BPL/1J m 51.0 14.9   4 7.45 0.292 30.4, 62.2 -1.7
BTBR T+ Itpr3tf/J m 87.7 3.34   4 1.67 0.0381 82.7, 89.6 0.71
BUB/BnJ m 65.5 2.25   4 1.13 0.0344 63.0, 68.4 -0.75
C3H/HeJ m 83.1 1.91   4 0.953 0.0229 81.6, 85.9 0.41
C57BL/10J m 77.9 2.64   5 1.18 0.0339 75.5, 81.9 0.07
C57BL/6J m 84.0 0.744   4 0.372 0.00886 83.0, 84.7 0.47
C57BLKS/J m 50.3 4.86   4 2.43 0.0965 44.4, 55.0 -1.74
C57L/J m 84.7 2.19   5 0.977 0.0258 81.7, 87.1 0.51
CAST/EiJ m 88.2 2.7   4 1.35 0.0306 84.2, 90.0 0.74
CBA/J m 89.6 1.37   4 0.684 0.0153 88.2, 90.8 0.83
DBA/1LacJ m 66.9 2.23   4 1.11 0.0333 63.9, 68.8 -0.65
DBA/2J m 83.7 2.99   5 1.34 0.0358 79.1, 87.1 0.45
FVB/NJ m 88.8 1.42   4 0.712 0.016 87.1, 90.2 0.78
ICR/HaJ m 75.1 1.52   4 0.758 0.0202 73.0, 76.5 -0.12
KK/HlJ m 42.9 3.0   5 1.34 0.0699 39.8, 46.6 -2.23
LP/J m 87.7 2.49   4 1.24 0.0284 85.3, 90.8 0.71
MOLF/EiJ m 25.3 3.21   4 1.6 0.127 21.4, 28.5 -3.39
MRL/MpJ m 87.7 1.7   5 0.762 0.0194 85.1, 89.6 0.71
NOD/LtDVS m 71.4 2.45   5 1.1 0.0343 68.6, 75.1 -0.36
NON/ShiLtJ m 68.3 1.62   4 0.811 0.0237 66.9, 70.1 -0.56
NZB/BlNJ m 77.2 0.988   4 0.494 0.0128 76.2, 78.3 0.02
NZO/HlLtJ m 72.7 3.75   4 1.88 0.0516 68.7, 75.9 -0.27
NZW/LacJ m 80.2 2.14   4 1.07 0.0267 77.5, 82.7 0.22
PL/J m 86.3 1.62   4 0.811 0.0188 84.1, 88.0 0.62
SJL/J m 82.0 2.02   5 0.902 0.0246 80.5, 85.1 0.34
SM/J m 75.8 1.56   5 0.696 0.0205 74.0, 78.1 -0.07
SWR/J m 90.2 0.294   4 0.147 0.00326 89.9, 90.6 0.87
WSB/EiJ m 75.5 2.55   4 1.28 0.0338 73.2, 78.7 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 90.05 1.7587 93.5342 86.5658
129X1/SvJ m 83.825 1.7587 87.3092 80.3408
A/J m 94.475 1.7587 97.9592 90.9908
AKR/J m 66.95 1.7587 70.4342 63.4658
ALR/LtJ m 73.2 1.7587 76.6842 69.7158
BALB/cByJ m 92.7 1.7587 96.1842 89.2158
BALB/cJ m 89.825 1.7587 93.3092 86.3408
BPL/1J m 51.0 1.7587 54.4842 47.5158
BTBR T+ Itpr3tf/J m 87.7 1.7587 91.1842 84.2158
BUB/BnJ m 65.5 1.7587 68.9842 62.0158
C3H/HeJ m 83.125 1.7587 86.6092 79.6408
C57BL/10J m 77.94 1.573 81.0564 74.8236
C57BL/6J m 84.0 1.7587 87.4842 80.5158
C57BLKS/J m 50.325 1.7587 53.8092 46.8408
C57L/J m 84.7 1.573 87.8164 81.5836
CAST/EiJ m 88.2 1.7587 91.6842 84.7158
CBA/J m 89.575 1.7587 93.0592 86.0908
DBA/1LacJ m 66.95 1.7587 70.4342 63.4658
DBA/2J m 83.74 1.573 86.8564 80.6236
FVB/NJ m 88.85 1.7587 92.3342 85.3658
ICR/HaJ m 75.05 1.7587 78.5342 71.5658
KK/HlJ m 42.9 1.573 46.0164 39.7836
LP/J m 87.675 1.7587 91.1592 84.1908
MOLF/EiJ m 25.325 1.7587 28.8092 21.8408
MRL/MpJ m 87.74 1.573 90.8564 84.6236
NOD/LtDVS m 71.4 1.573 74.5164 68.2836
NON/ShiLtJ m 68.325 1.7587 71.8092 64.8408
NZB/BlNJ m 77.225 1.7587 80.7092 73.7408
NZO/HlLtJ m 72.7 1.7587 76.1842 69.2158
NZW/LacJ m 80.15 1.7587 83.6342 76.6658
PL/J m 86.3 1.7587 89.7842 82.8158
SJL/J m 82.0 1.573 85.1164 78.8836
SM/J m 75.84 1.573 78.9564 72.7236
SWR/J m 90.2 1.7587 93.6842 86.7158
WSB/EiJ m 75.5 1.7587 78.9842 72.0158




  GWAS USING LINEAR MIXED MODELS