Phenotype measure:   Chen1   pct_iNKT_T_spleen

ID, description, units MPD:52303   pct_iNKT_T_spleen   percentage of total TCRβ+ cells that are invariant NK T cells, spleen   [%]
Data set, strains Chen1   inbred   38 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Chen1 - percentage of total TCRβ+ cells that are invariant NK T cells, spleen



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested38 strains
Mean of the strain means1.63   %
Median of the strain means1.53   %
SD of the strain means± 0.983
Coefficient of variation (CV)0.602
Min–max range of strain means0.0180   –   4.11   %
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 37 145.1779 3.9237 37.2528 < 0.0001
Residuals 122 12.8499 0.1053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.96 0.163   4 0.0816 0.0831 1.79, 2.13 0.33
129X1/SvJ m 1.83 0.223   4 0.111 0.121 1.52, 2.04 0.2
A/J m 1.92 0.198   4 0.0991 0.103 1.72, 2.19 0.29
AKR/J m 1.19 0.198   4 0.0988 0.166 1.0, 1.4 -0.45
ALR/LtJ m 0.593 0.286   4 0.143 0.483 0.33, 0.85 -1.06
BALB/cByJ m 2.58 0.454   4 0.227 0.176 1.93, 2.97 0.97
BALB/cJ m 1.13 0.138   4 0.0691 0.122 0.99, 1.32 -0.51
BPL/1J m 3.71 0.558   4 0.279 0.151 3.06, 4.29 2.12
BTBR T+ Itpr3tf/J m 1.68 0.265   4 0.132 0.158 1.44, 1.96 0.05
BUB/BnJ m 2.99 1.14   4 0.571 0.382 2.08, 4.6 1.38
C3H/HeJ m 1.21 0.187   4 0.0936 0.155 0.93, 1.32 -0.43
C57BL/10J m 0.982 0.176   5 0.0788 0.179 0.82, 1.23 -0.66
C57BL/6J m 2.34 0.333   4 0.167 0.142 2.08, 2.8 0.72
C57BLKS/J m 0.657 0.0854   4 0.0427 0.13 0.55, 0.74 -0.99
C57L/J m 0.974 0.109   5 0.0486 0.112 0.88, 1.15 -0.67
CAST/EiJ m 0.618 0.0568   4 0.0284 0.092 0.58, 0.7 -1.03
CBA/J m 2.24 0.192   4 0.0961 0.086 2.04, 2.45 0.62
DBA/1LacJ m 2.34 0.686   4 0.343 0.293 1.44, 2.96 0.72
DBA/2J m 1.36 0.225   5 0.1 0.166 1.19, 1.7 -0.28
FVB/NJ m 2.95 0.0271   4 0.0135 0.00918 2.93, 2.99 1.34
ICR/HaJ m 3.23 0.15   4 0.0749 0.0464 3.13, 3.45 1.63
KK/HlJ m 1.52 0.168   5 0.0751 0.111 1.35, 1.76 -0.11
LP/J m 1.54 0.152   4 0.0762 0.0991 1.38, 1.73 -0.09
MOLF/EiJ m 0.85 0.0945   4 0.0473 0.111 0.72, 0.92 -0.8
MRL/MpJ m 1.24 0.165   5 0.0739 0.134 1.04, 1.4 -0.4
MSM/MsJ m 0.018 0.00913   4 0.00456 0.507 0.01, 0.029 -1.64
NOD/LtDVS m 0.72 0.119   5 0.0534 0.166 0.56, 0.87 -0.93
NON/ShiLtJ m 4.11 0.752   4 0.376 0.183 3.33, 4.94 2.52
NZB/BlNJ m 1.89 0.366   4 0.183 0.193 1.59, 2.42 0.26
NZO/HlLtJ m 2.1 0.345   4 0.172 0.164 1.82, 2.54 0.48
NZW/LacJ m 2.39 0.447   4 0.223 0.187 1.87, 2.85 0.77
PL/J m 0.86 0.077   4 0.0385 0.0896 0.78, 0.94 -0.79
PWD/PhJ m 0.04 0.00779   4 0.00389 0.195 0.03, 0.049 -1.62
SJL/J m 0.91 0.0977   5 0.0437 0.107 0.81, 1.07 -0.73
SM/J m 1.75 0.256   5 0.115 0.146 1.39, 2.01 0.12
SPRET/EiJ m 0.152 0.0457   4 0.0229 0.3 0.12, 0.22 -1.51
SWR/J m 2.44 0.238   4 0.119 0.0978 2.19, 2.69 0.82
WSB/EiJ m 0.98 0.124   4 0.062 0.127 0.82, 1.12 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.9625 0.1623 2.2837 1.6413
129X1/SvJ m 1.8325 0.1623 2.1537 1.5113
A/J m 1.9175 0.1623 2.2387 1.5963
AKR/J m 1.1875 0.1623 1.5087 0.8663
ALR/LtJ m 0.5925 0.1623 0.9137 0.2713
BALB/cByJ m 2.5825 0.1623 2.9037 2.2613
BALB/cJ m 1.1325 0.1623 1.4537 0.8113
BPL/1J m 3.71 0.1623 4.0312 3.3888
BTBR T+ Itpr3tf/J m 1.675 0.1623 1.9962 1.3538
BUB/BnJ m 2.9925 0.1623 3.3137 2.6713
C3H/HeJ m 1.2075 0.1623 1.5287 0.8863
C57BL/10J m 0.982 0.1451 1.2693 0.6947
C57BL/6J m 2.34 0.1623 2.6612 2.0188
C57BLKS/J m 0.6575 0.1623 0.9787 0.3363
C57L/J m 0.974 0.1451 1.2613 0.6867
CAST/EiJ m 0.6175 0.1623 0.9387 0.2963
CBA/J m 2.235 0.1623 2.5562 1.9138
DBA/1LacJ m 2.34 0.1623 2.6612 2.0188
DBA/2J m 1.356 0.1451 1.6433 1.0687
FVB/NJ m 2.95 0.1623 3.2712 2.6288
ICR/HaJ m 3.2275 0.1623 3.5487 2.9063
KK/HlJ m 1.518 0.1451 1.8053 1.2307
LP/J m 1.5375 0.1623 1.8587 1.2163
MOLF/EiJ m 0.85 0.1623 1.1712 0.5288
MRL/MpJ m 1.238 0.1451 1.5253 0.9507
MSM/MsJ m 0.018 0.1623 0.3392 0.0
NOD/LtDVS m 0.72 0.1451 1.0073 0.4327
NON/ShiLtJ m 4.105 0.1623 4.4262 3.7838
NZB/BlNJ m 1.8925 0.1623 2.2137 1.5713
NZO/HlLtJ m 2.1 0.1623 2.4212 1.7788
NZW/LacJ m 2.39 0.1623 2.7112 2.0688
PL/J m 0.86 0.1623 1.1812 0.5388
PWD/PhJ m 0.04 0.1623 0.3612 0.0
SJL/J m 0.91 0.1451 1.1973 0.6227
SM/J m 1.752 0.1451 2.0393 1.4647
SPRET/EiJ m 0.1525 0.1623 0.4737 0.0
SWR/J m 2.435 0.1623 2.7562 2.1138
WSB/EiJ m 0.98 0.1623 1.3012 0.6588




  GWAS USING LINEAR MIXED MODELS