Phenotype measure:   Chen1   pct_iNKT_CD4_pb

ID, description, units MPD:52302   pct_iNKT_CD4_pb   percentage of invariant NK T cells that express CD4, peripheral blood   [%]
Data set, strains Chen1   inbred   34 strains     sex: m     age: 8-10wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Chen1 - percentage of invariant NK T cells that express CD4, peripheral blood



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested34 strains
Mean of the strain means60.9   %
Median of the strain means62.5   %
SD of the strain means± 20.4
Coefficient of variation (CV)0.336
Min–max range of strain means24.1   –   92.0   %
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 33 57360.0394 1738.183 56.9575 < 0.0001
Residuals 110 3356.89 30.5172


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 85.6 1.41   4 0.703 0.0164 84.3, 87.6 1.21
129X1/SvJ m 79.5 3.72   4 1.86 0.0468 74.5, 83.2 0.91
A/J m 86.2 2.66   4 1.33 0.0308 84.0, 89.9 1.24
AKR/J m 36.4 1.06   4 0.531 0.0292 35.1, 37.3 -1.2
ALR/LtJ m 36.5 7.17   4 3.59 0.197 29.5, 46.5 -1.19
BALB/cByJ m 92.0 2.22   4 1.11 0.0242 88.9, 94.0 1.52
BALB/cJ m 79.6 1.34   4 0.669 0.0168 78.0, 81.2 0.92
BPL/1J m 48.9 15.2   4 7.58 0.31 29.6, 63.3 -0.58
BTBR T+ Itpr3tf/J m 84.5 1.56   4 0.78 0.0185 82.2, 85.7 1.16
BUB/BnJ m 44.6 4.19   4 2.09 0.0938 41.8, 50.8 -0.79
C3H/HeJ m 68.1 5.18   4 2.59 0.076 60.6, 72.3 0.35
C57BL/10J m 47.4 6.68   5 2.99 0.141 41.0, 58.2 -0.66
C57BL/6J m 59.9 2.34   4 1.17 0.0391 56.9, 62.5 -0.05
C57BLKS/J m 29.1 4.89   4 2.45 0.168 25.2, 36.2 -1.55
C57L/J m 72.5 0.844   5 0.378 0.0117 71.5, 73.5 0.57
CBA/J m 88.4 1.54   4 0.769 0.0174 86.6, 90.3 1.35
DBA/1LacJ m 38.0 4.87   4 2.43 0.128 32.4, 43.0 -1.12
DBA/2J m 48.5 4.64   5 2.07 0.0957 44.2, 55.3 -0.6
FVB/NJ m 75.0 3.31   4 1.65 0.0441 70.8, 78.8 0.69
ICR/HaJ m 53.6 4.65   4 2.32 0.0867 48.7, 59.8 -0.35
KK/HlJ m 31.5 1.98   5 0.885 0.0629 30.0, 34.8 -1.44
LP/J m 77.0 2.63   4 1.32 0.0342 74.5, 79.9 0.79
MOLF/EiJ m 24.1 4.2   4 2.1 0.175 17.9, 27.1 -1.8
MRL/MpJ m 48.6 13.1   5 5.86 0.27 29.0, 64.0 -0.6
NOD/LtDVS m 34.5 7.0   5 3.13 0.203 27.1, 44.8 -1.29
NON/ShiLtJ m 43.9 4.97   4 2.49 0.113 37.2, 49.0 -0.83
NZB/BlNJ m 67.2 4.44   4 2.22 0.0662 62.5, 71.1 0.31
NZO/HlLtJ m 44.6 2.08   4 1.04 0.0466 42.7, 47.4 -0.79
NZW/LacJ m 75.7 1.03   4 0.517 0.0137 74.5, 77.0 0.73
PL/J m 85.2 3.83   4 1.91 0.0449 81.8, 90.3 1.19
SJL/J m 61.1 5.39   5 2.41 0.0882 53.5, 67.9 0.01
SM/J m 64.0 3.19   5 1.43 0.0499 59.9, 67.9 0.15
SWR/J m 90.5 3.53   4 1.77 0.039 87.1, 94.9 1.45
WSB/EiJ m 66.8 11.4   4 5.69 0.171 50.0, 75.3 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 85.65 2.7621 91.1239 80.1761
129X1/SvJ m 79.45 2.7621 84.9239 73.9761
A/J m 86.25 2.7621 91.7239 80.7761
AKR/J m 36.375 2.7621 41.8489 30.9011
ALR/LtJ m 36.45 2.7621 41.9239 30.9761
BALB/cByJ m 92.025 2.7621 97.4989 86.5511
BALB/cJ m 79.625 2.7621 85.0989 74.1511
BPL/1J m 48.95 2.7621 54.4239 43.4761
BTBR T+ Itpr3tf/J m 84.475 2.7621 89.9489 79.0011
BUB/BnJ m 44.625 2.7621 50.0989 39.1511
C3H/HeJ m 68.1 2.7621 73.5739 62.6261
C57BL/10J m 47.44 2.4705 52.336 42.544
C57BL/6J m 59.875 2.7621 65.3489 54.4011
C57BLKS/J m 29.125 2.7621 34.5989 23.6511
C57L/J m 72.46 2.4705 77.356 67.564
CBA/J m 88.4 2.7621 93.8739 82.9261
DBA/1LacJ m 38.0 2.7621 43.4739 32.5261
DBA/2J m 48.46 2.4705 53.356 43.564
FVB/NJ m 74.95 2.7621 80.4239 69.4761
ICR/HaJ m 53.65 2.7621 59.1239 48.1761
KK/HlJ m 31.46 2.4705 36.356 26.564
LP/J m 77.025 2.7621 82.4989 71.5511
MOLF/EiJ m 24.05 2.7621 29.5239 18.5761
MRL/MpJ m 48.6 2.4705 53.496 43.704
NOD/LtDVS m 34.5 2.4705 39.396 29.604
NON/ShiLtJ m 43.875 2.7621 49.3489 38.4011
NZB/BlNJ m 67.15 2.7621 72.6239 61.6761
NZO/HlLtJ m 44.6 2.7621 50.0739 39.1261
NZW/LacJ m 75.725 2.7621 81.1989 70.2511
PL/J m 85.225 2.7621 90.6989 79.7511
SJL/J m 61.1 2.4705 65.996 56.204
SM/J m 63.96 2.4705 68.856 59.064
SWR/J m 90.525 2.7621 95.9989 85.0511
WSB/EiJ m 66.75 2.7621 72.2239 61.2761




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.