Phenotype measure:   HMDPpheno9   PGPEA

ID, description, units MPD:50430   PGPEA   liver 1-palmitoylglycerophosphoethanolamine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-palmitoylglycerophosphoethanolamine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means695199   None
Median of the strain means683602   None
SD of the strain means± 167331
Coefficient of variation (CV)0.241
Min–max range of strain means313217   –   1177357   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1471536192354.19 70073152016.8664 1.6473 0.0952
Residuals 34 1446295770816.11 42538110906.356


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 789035.0 0.0   1   0.0 0.0 789035.0, 789035.0 0.56
A/J m 462341.0 233580.0   2   165166.0 0.505 297175.0, 627507.0 -1.39
AKR/J m 576536.0 0.0   1   0.0 0.0 576536.0, 576536.0 -0.71
AXB10/PgnJ m 680633.0 0.0   1   0.0 0.0 680633.0, 680633.0 -0.09
AXB12/PgnJ m 732290.0 0.0   1   0.0 0.0 732290.0, 732290.0 0.22
AXB13/PgnJ m 386444.0 0.0   1   0.0 0.0 386444.0, 386444.0 -1.85
AXB15/PgnJ m 617532.0 0.0   1   0.0 0.0 617532.0, 617532.0 -0.46
AXB19a/PgnJ m 504849.0 0.0   1   0.0 0.0 504849.0, 504849.0 -1.14
AXB19b/PgnJ m 509304.0 29185.0   2   20637.0 0.0573 488666.0, 529941.0 -1.11
AXB19/PgnJ m 695556.0 0.0   1   0.0 0.0 695556.0, 695556.0 0.0
AXB1/PgnJ m 313217.0 0.0   1   0.0 0.0 313217.0, 313217.0 -2.28
AXB23/PgnJ m 831373.0 0.0   1   0.0 0.0 831373.0, 831373.0 0.81
AXB24/PgnJ m 677503.0 53731.0   2   37994.0 0.0793 639509.0, 715497.0 -0.11
AXB2/PgnJ m 529052.0 0.0   1   0.0 0.0 529052.0, 529052.0 -0.99
AXB4/PgnJ m 666480.0 0.0   1   0.0 0.0 666480.0, 666480.0 -0.17
AXB5/PgnJ m 656426.0 0.0   1   0.0 0.0 656426.0, 656426.0 -0.23
AXB6/PgnJ m 585114.0 0.0   1   0.0 0.0 585114.0, 585114.0 -0.66
AXB8/PgnJ m 660714.0 0.0   1   0.0 0.0 660714.0, 660714.0 -0.21
BALB/cJ m 780686.0 159739.0   3 92226.0 0.205 612114.0, 929813.0 0.51
BTBR T+ Itpr3tf/J m 478480.0 0.0   1   0.0 0.0 478480.0, 478480.0 -1.3
BUB/BnJ m 782655.0 0.0   1   0.0 0.0 782655.0, 782655.0 0.52
BXA11/PgnJ m 916598.0 0.0   1   0.0 0.0 916598.0, 916598.0 1.32
BXA12/PgnJ m 615824.0 0.0   1   0.0 0.0 615824.0, 615824.0 -0.47
BXA13/PgnJ m 543884.0 0.0   1   0.0 0.0 543884.0, 543884.0 -0.9
BXA14/PgnJ m 638724.0 0.0   1   0.0 0.0 638724.0, 638724.0 -0.34
BXA16/PgnJ m 742019.0 42335.0   2   29935.0 0.0571 712084.0, 771954.0 0.28
BXA1/PgnJ m 1092102.0 0.0   1   0.0 0.0 1092102.0, 1092102.0 2.37
BXA24/PgnJ m 634705.0 0.0   1   0.0 0.0 634705.0, 634705.0 -0.36
BXA25/PgnJ m 754837.0 0.0   1   0.0 0.0 754837.0, 754837.0 0.36
BXA26/PgnJ m 1093394.0 0.0   1   0.0 0.0 1093394.0, 1093394.0 2.38
BXA2/PgnJ m 605697.0 0.0   1   0.0 0.0 605697.0, 605697.0 -0.53
BXA4/PgnJ m 656212.0 0.0   1   0.0 0.0 656212.0, 656212.0 -0.23
BXA7/PgnJ m 369429.0 0.0   1   0.0 0.0 369429.0, 369429.0 -1.95
BXA8/PgnJ m 1125130.0 0.0   1   0.0 0.0 1125130.0, 1125130.0 2.57
BXD11/TyJ m 460412.0 0.0   1   0.0 0.0 460412.0, 460412.0 -1.4
BXD12/TyJ m 659750.0 0.0   1   0.0 0.0 659750.0, 659750.0 -0.21
BXD13/TyJ m 950048.0 0.0   1   0.0 0.0 950048.0, 950048.0 1.52
BXD14/TyJ m 549788.0 0.0   1   0.0 0.0 549788.0, 549788.0 -0.87
BXD15/TyJ m 728695.0 0.0   1   0.0 0.0 728695.0, 728695.0 0.2
BXD18/TyJ m 769178.0 0.0   1   0.0 0.0 769178.0, 769178.0 0.44
BXD19/TyJ m 704405.0 173663.0   2   122799.0 0.247 581606.0, 827203.0 0.06
BXD1/TyJ m 615703.0 0.0   1   0.0 0.0 615703.0, 615703.0 -0.48
BXD20/TyJ m 535971.0 0.0   1   0.0 0.0 535971.0, 535971.0 -0.95
BXD21/TyJ m 752790.0 0.0   1   0.0 0.0 752790.0, 752790.0 0.34
BXD22/TyJ m 659578.0 0.0   1   0.0 0.0 659578.0, 659578.0 -0.21
BXD24/TyJ m 619312.0 0.0   1   0.0 0.0 619312.0, 619312.0 -0.45
BXD24/TyJ-Cep290rd16/J m 674607.0 0.0   1   0.0 0.0 674607.0, 674607.0 -0.12
BXD28/TyJ m 735691.0 62088.0   2   43903.0 0.0844 691788.0, 779594.0 0.24
BXD29-Tlr4lps-2J/J m 557069.0 0.0   1   0.0 0.0 557069.0, 557069.0 -0.83
BXD2/TyJ m 949732.0 0.0   1   0.0 0.0 949732.0, 949732.0 1.52
BXD32/TyJ m 716784.0 0.0   1   0.0 0.0 716784.0, 716784.0 0.13
BXD33/TyJ m 701587.0 0.0   1   0.0 0.0 701587.0, 701587.0 0.04
BXD34/TyJ m 568250.0 0.0   1   0.0 0.0 568250.0, 568250.0 -0.76
BXD36/TyJ m 679854.0 0.0   1   0.0 0.0 679854.0, 679854.0 -0.09
BXD38/TyJ m 709453.0 0.0   1   0.0 0.0 709453.0, 709453.0 0.09
BXD39/TyJ m 867827.0 0.0   1   0.0 0.0 867827.0, 867827.0 1.03
BXD40/TyJ m 851193.0 0.0   1   0.0 0.0 851193.0, 851193.0 0.93
BXD42/TyJ m 541002.0 0.0   1   0.0 0.0 541002.0, 541002.0 -0.92
BXD5/TyJ m 805494.0 0.0   1   0.0 0.0 805494.0, 805494.0 0.66
BXD6/TyJ m 753436.0 0.0   1   0.0 0.0 753436.0, 753436.0 0.35
BXD8/TyJ m 741330.0 0.0   1   0.0 0.0 741330.0, 741330.0 0.28
BXD9/TyJ m 857901.0 0.0   1   0.0 0.0 857901.0, 857901.0 0.97
BXH10/TyJ m 463834.0 0.0   1   0.0 0.0 463834.0, 463834.0 -1.38
BXH19/TyJ m 500796.0 0.0   1   0.0 0.0 500796.0, 500796.0 -1.16
BXH20/KccJ m 539752.0 0.0   1   0.0 0.0 539752.0, 539752.0 -0.93
BXH22/KccJ m 686570.0 0.0   1   0.0 0.0 686570.0, 686570.0 -0.05
BXH2/TyJ m 659583.0 0.0   1   0.0 0.0 659583.0, 659583.0 -0.21
BXH4/TyJ m 508788.0 3773.0   2   2668.0 0.00742 506120.0, 511456.0 -1.11
BXH6/TyJ m 578134.0 0.0   1   0.0 0.0 578134.0, 578134.0 -0.7
BXH7/TyJ m 489242.0 0.0   1   0.0 0.0 489242.0, 489242.0 -1.23
BXH8/TyJ m 688586.0 0.0   1   0.0 0.0 688586.0, 688586.0 -0.04
BXH9/TyJ m 925807.0 0.0   1   0.0 0.0 925807.0, 925807.0 1.38
C3H/HeJ m 822425.0 417480.0   2   295203.0 0.508 527222.0, 1117628.0 0.76
C57BL/6J m 588905.0 268497.0   5 120075.0 0.456 124065.0, 807712.0 -0.64
C57L/J m 695283.0 0.0   1   0.0 0.0 695283.0, 695283.0 0.0
C58/J m 621017.0 0.0   1   0.0 0.0 621017.0, 621017.0 -0.44
CAST/EiJ m 390514.0 0.0   1   0.0 0.0 390514.0, 390514.0 -1.82
CBA/J m 745549.0 0.0   1   0.0 0.0 745549.0, 745549.0 0.3
CE/J m 707696.0 0.0   1   0.0 0.0 707696.0, 707696.0 0.07
CXB11/HiAJ m 590660.0 155773.0   2   110148.0 0.264 480512.0, 700809.0 -0.62
CXB12/HiAJ m 701214.0 213898.0   2   151249.0 0.305 549965.0, 852463.0 0.04
CXB13/HiAJ m 712301.0 42290.0   3 24416.0 0.0594 686159.0, 761091.0 0.1
CXB1/ByJ m 1020213.0 184646.0   3 106606.0 0.181 896733.0, 1232481.0 1.94
CXB2/ByJ m 689520.0 145718.0   3 84130.0 0.211 525227.0, 803124.0 -0.03
CXB3/ByJ m 904035.0 103332.0   2   73067.0 0.114 830968.0, 977102.0 1.25
CXB4/ByJ m 849913.0 10148.0   2   7176.0 0.0119 842737.0, 857089.0 0.92
CXB6/ByJ m 496869.0 288827.0   3 166754.0 0.581 257044.0, 817490.0 -1.19
CXB7/ByJ m 745672.0 195088.0   2   137948.0 0.262 607724.0, 883620.0 0.3
CXB8/HiAJ m 1118430.0 443749.0   3 256199.0 0.397 798631.0, 1625042.0 2.53
CXB9/HiAJ m 736592.0 115512.0   3 66691.0 0.157 606267.0, 826346.0 0.25
DBA/2J m 734117.0 77562.0   4 38781.0 0.106 637966.0, 823756.0 0.23
FVB/NJ m 647948.0 0.0   1   0.0 0.0 647948.0, 647948.0 -0.28
I/LnJ m 703010.0 0.0   1   0.0 0.0 703010.0, 703010.0 0.05
KK/HlJ m 1067672.0 0.0   1   0.0 0.0 1067672.0, 1067672.0 2.23
LG/J m 722004.0 0.0   1   0.0 0.0 722004.0, 722004.0 0.16
LP/J m 744414.0 0.0   1   0.0 0.0 744414.0, 744414.0 0.29
MA/MyJ m 662348.0 0.0   1   0.0 0.0 662348.0, 662348.0 -0.2
NOD/ShiLtJ m 987140.0 0.0   1   0.0 0.0 987140.0, 987140.0 1.74
NON/ShiLtJ m 614293.0 0.0   1   0.0 0.0 614293.0, 614293.0 -0.48
NZW/LacJ m 668781.0 0.0   1   0.0 0.0 668781.0, 668781.0 -0.16
PL/J m 634115.0 0.0   1   0.0 0.0 634115.0, 634115.0 -0.37
RIIIS/J m 729925.0 0.0   1   0.0 0.0 729925.0, 729925.0 0.21
SEA/GnJ m 780128.0 0.0   1   0.0 0.0 780128.0, 780128.0 0.51
SJL/J m 620832.0 0.0   1   0.0 0.0 620832.0, 620832.0 -0.44
SM/J m 597544.0 0.0   1   0.0 0.0 597544.0, 597544.0 -0.58
SWR/J m 1177357.0 0.0   1   0.0 0.0 1177357.0, 1177357.0 2.88


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 462341.1 145839.1424 758721.8964 165960.3036
AXB19b/PgnJ m 509303.6 145839.1424 805684.3964 212922.8036
AXB24/PgnJ m 677503.0 145839.1424 973883.7964 381122.2036
BALB/cJ m 780686.4333 119077.1611 1022680.3402 538692.5264
BXA16/PgnJ m 742018.7 145839.1424 1038399.4964 445637.9036
BXD19/TyJ m 704404.7 145839.1424 1000785.4964 408023.9036
BXD28/TyJ m 735690.65 145839.1424 1032071.4464 439309.8536
BXH4/TyJ m 508788.1 145839.1424 805168.8964 212407.3036
C3H/HeJ m 822425.3 145839.1424 1118806.0964 526044.5036
C57BL/6J m 588905.04 92236.7724 776352.7143 401457.3657
CXB11/HiAJ m 590660.35 145839.1424 887041.1464 294279.5536
CXB12/HiAJ m 701213.95 145839.1424 997594.7464 404833.1536
CXB13/HiAJ m 712301.2 119077.1611 954295.1069 470307.2931
CXB1/ByJ m 1020212.8667 119077.1611 1262206.7736 778218.9598
CXB2/ByJ m 689519.6 119077.1611 931513.5069 447525.6931
CXB3/ByJ m 904034.85 145839.1424 1200415.6464 607654.0536
CXB4/ByJ m 849913.2 145839.1424 1146293.9964 553532.4036
CXB6/ByJ m 496868.7667 119077.1611 738862.6736 254874.8598
CXB7/ByJ m 745672.1 145839.1424 1042052.8964 449291.3036
CXB8/HiAJ m 1118430.1 119077.1611 1360424.0069 876436.1931
CXB9/HiAJ m 736592.1333 119077.1611 978586.0402 494598.2264
DBA/2J m 734116.725 103123.8465 943689.5959 524543.8541




  GWAS USING LINEAR MIXED MODELS