Phenotype measure:   HMDPpheno9   PGEA

ID, description, units MPD:50429   PGEA   liver 2-palmitoylglycerophosphoethanolamine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-palmitoylglycerophosphoethanolamine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means39928   None
Median of the strain means38428   None
SD of the strain means± 15038
Coefficient of variation (CV)0.377
Min–max range of strain means4652   –   82840   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 18 2749557524.347 152753195.7971 0.6003 0.872
Residuals 31 7888771113.698 254476487.5386


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 68672.0 0.0   1   0.0 0.0 68672.0, 68672.0 1.91
A/J m 28838.0 13908.0   2   9835.0 0.482 19004.0, 38673.0 -0.74
AKR/J m 54872.0 0.0   1   0.0 0.0 54872.0, 54872.0 0.99
AXB10/PgnJ m 41319.0 0.0   1   0.0 0.0 41319.0, 41319.0 0.09
AXB12/PgnJ m 53331.0 0.0   1   0.0 0.0 53331.0, 53331.0 0.89
AXB13/PgnJ m 17194.0 0.0   1   0.0 0.0 17194.0, 17194.0 -1.51
AXB15/PgnJ m 37204.0 0.0   1   0.0 0.0 37204.0, 37204.0 -0.18
AXB19a/PgnJ m 4652.0 0.0   1   0.0 0.0 4652.0, 4652.0 -2.35
AXB19/PgnJ m 39653.0 0.0   1   0.0 0.0 39653.0, 39653.0 -0.02
AXB1/PgnJ m 27034.0 0.0   1   0.0 0.0 27034.0, 27034.0 -0.86
AXB23/PgnJ m 41913.0 0.0   1   0.0 0.0 41913.0, 41913.0 0.13
AXB24/PgnJ m 37665.0 12164.0   2   8601.0 0.323 29064.0, 46266.0 -0.15
AXB2/PgnJ m 46032.0 0.0   1   0.0 0.0 46032.0, 46032.0 0.41
AXB4/PgnJ m 34402.0 0.0   1   0.0 0.0 34402.0, 34402.0 -0.37
AXB5/PgnJ m 38428.0 0.0   1   0.0 0.0 38428.0, 38428.0 -0.1
AXB8/PgnJ m 40359.0 0.0   1   0.0 0.0 40359.0, 40359.0 0.03
BALB/cJ m 32780.0 1549.0   3 894.0 0.0473 31775.0, 34564.0 -0.48
BTBR T+ Itpr3tf/J m 31117.0 0.0   1   0.0 0.0 31117.0, 31117.0 -0.59
BUB/BnJ m 71424.0 0.0   1   0.0 0.0 71424.0, 71424.0 2.09
BXA11/PgnJ m 70758.0 0.0   1   0.0 0.0 70758.0, 70758.0 2.05
BXA12/PgnJ m 29542.0 0.0   1   0.0 0.0 29542.0, 29542.0 -0.69
BXA13/PgnJ m 29225.0 0.0   1   0.0 0.0 29225.0, 29225.0 -0.71
BXA14/PgnJ m 19448.0 0.0   1   0.0 0.0 19448.0, 19448.0 -1.36
BXA16/PgnJ m 43624.0 10357.0   2   7324.0 0.237 36300.0, 50948.0 0.25
BXA1/PgnJ m 77636.0 0.0   1   0.0 0.0 77636.0, 77636.0 2.51
BXA26/PgnJ m 70534.0 0.0   1   0.0 0.0 70534.0, 70534.0 2.04
BXA2/PgnJ m 40433.0 0.0   1   0.0 0.0 40433.0, 40433.0 0.03
BXA4/PgnJ m 29682.0 0.0   1   0.0 0.0 29682.0, 29682.0 -0.68
BXA7/PgnJ m 29116.0 0.0   1   0.0 0.0 29116.0, 29116.0 -0.72
BXA8/PgnJ m 66878.0 0.0   1   0.0 0.0 66878.0, 66878.0 1.79
BXD11/TyJ m 33601.0 0.0   1   0.0 0.0 33601.0, 33601.0 -0.42
BXD12/TyJ m 25595.0 0.0   1   0.0 0.0 25595.0, 25595.0 -0.95
BXD13/TyJ m 31214.0 0.0   1   0.0 0.0 31214.0, 31214.0 -0.58
BXD14/TyJ m 38184.0 0.0   1   0.0 0.0 38184.0, 38184.0 -0.12
BXD15/TyJ m 27314.0 0.0   1   0.0 0.0 27314.0, 27314.0 -0.84
BXD18/TyJ m 56152.0 0.0   1   0.0 0.0 56152.0, 56152.0 1.08
BXD19/TyJ m 30276.0 3309.0   2   2340.0 0.109 27937.0, 32616.0 -0.64
BXD1/TyJ m 45652.0 0.0   1   0.0 0.0 45652.0, 45652.0 0.38
BXD20/TyJ m 24894.0 0.0   1   0.0 0.0 24894.0, 24894.0 -1.0
BXD21/TyJ m 42086.0 0.0   1   0.0 0.0 42086.0, 42086.0 0.14
BXD22/TyJ m 43686.0 0.0   1   0.0 0.0 43686.0, 43686.0 0.25
BXD24/TyJ m 32592.0 0.0   1   0.0 0.0 32592.0, 32592.0 -0.49
BXD28/TyJ m 47284.0 9673.0   2   6840.0 0.205 40444.0, 54124.0 0.49
BXD29-Tlr4lps-2J/J m 43266.0 0.0   1   0.0 0.0 43266.0, 43266.0 0.22
BXD2/TyJ m 43730.0 0.0   1   0.0 0.0 43730.0, 43730.0 0.25
BXD32/TyJ m 34941.0 0.0   1   0.0 0.0 34941.0, 34941.0 -0.33
BXD36/TyJ m 37084.0 0.0   1   0.0 0.0 37084.0, 37084.0 -0.19
BXD38/TyJ m 47425.0 0.0   1   0.0 0.0 47425.0, 47425.0 0.5
BXD39/TyJ m 42977.0 0.0   1   0.0 0.0 42977.0, 42977.0 0.2
BXD40/TyJ m 58654.0 0.0   1   0.0 0.0 58654.0, 58654.0 1.25
BXD42/TyJ m 18949.0 0.0   1   0.0 0.0 18949.0, 18949.0 -1.4
BXD5/TyJ m 36236.0 0.0   1   0.0 0.0 36236.0, 36236.0 -0.25
BXD6/TyJ m 26523.0 0.0   1   0.0 0.0 26523.0, 26523.0 -0.89
BXD8/TyJ m 41931.0 0.0   1   0.0 0.0 41931.0, 41931.0 0.13
BXD9/TyJ m 40727.0 0.0   1   0.0 0.0 40727.0, 40727.0 0.05
BXH10/TyJ m 30222.0 0.0   1   0.0 0.0 30222.0, 30222.0 -0.65
BXH19/TyJ m 17101.0 0.0   1   0.0 0.0 17101.0, 17101.0 -1.52
BXH20/KccJ m 24674.0 0.0   1   0.0 0.0 24674.0, 24674.0 -1.01
BXH22/KccJ m 39957.0 0.0   1   0.0 0.0 39957.0, 39957.0 0.0
BXH2/TyJ m 55455.0 0.0   1   0.0 0.0 55455.0, 55455.0 1.03
BXH8/TyJ m 37060.0 0.0   1   0.0 0.0 37060.0, 37060.0 -0.19
BXH9/TyJ m 47068.0 0.0   1   0.0 0.0 47068.0, 47068.0 0.47
C3H/HeJ m 41426.0 28734.0   2   20318.0 0.694 21108.0, 61744.0 0.1
C57BL/6J m 40004.0 20021.0   5 8954.0 0.5 8156.0, 55519.0 0.01
C57L/J m 39932.0 0.0   1   0.0 0.0 39932.0, 39932.0 0.0
C58/J m 29689.0 0.0   1   0.0 0.0 29689.0, 29689.0 -0.68
CAST/EiJ m 22232.0 0.0   1   0.0 0.0 22232.0, 22232.0 -1.18
CBA/J m 29862.0 0.0   1   0.0 0.0 29862.0, 29862.0 -0.67
CE/J m 19646.0 0.0   1   0.0 0.0 19646.0, 19646.0 -1.35
CXB11/HiAJ m 39455.0 3797.0   2   2685.0 0.0962 36770.0, 42140.0 -0.03
CXB12/HiAJ m 36562.0 4576.0   2   3236.0 0.125 33326.0, 39798.0 -0.22
CXB13/HiAJ m 42863.0 6526.0   3 3768.0 0.152 35538.0, 48055.0 0.2
CXB1/ByJ m 53278.0 14361.0   3 8291.0 0.27 41811.0, 69386.0 0.89
CXB2/ByJ m 45518.0 22758.0   3 13139.0 0.5 29154.0, 71507.0 0.37
CXB3/ByJ m 33028.0 7637.0   2   5400.0 0.231 27628.0, 38428.0 -0.46
CXB4/ByJ m 34002.0 10248.0   2   7246.0 0.301 26756.0, 41248.0 -0.39
CXB6/ByJ m 28577.0 14007.0   3 8087.0 0.49 12468.0, 37882.0 -0.75
CXB7/ByJ m 57239.0 0.0   1   0.0 0.0 57239.0, 57239.0 1.15
CXB8/HiAJ m 54339.0 31414.0   3 18137.0 0.578 33052.0, 90418.0 0.96
CXB9/HiAJ m 45171.0 11446.0   3 6608.0 0.253 37060.0, 58263.0 0.35
DBA/2J m 35484.0 13436.0   4 6718.0 0.379 16055.0, 47000.0 -0.3
FVB/NJ m 27396.0 0.0   1   0.0 0.0 27396.0, 27396.0 -0.83
KK/HlJ m 82840.0 0.0   1   0.0 0.0 82840.0, 82840.0 2.85
LG/J m 29455.0 0.0   1   0.0 0.0 29455.0, 29455.0 -0.7
LP/J m 31901.0 0.0   1   0.0 0.0 31901.0, 31901.0 -0.53
MA/MyJ m 68798.0 0.0   1   0.0 0.0 68798.0, 68798.0 1.92
NOD/ShiLtJ m 66086.0 0.0   1   0.0 0.0 66086.0, 66086.0 1.74
NON/ShiLtJ m 11579.0 0.0   1   0.0 0.0 11579.0, 11579.0 -1.89
NZW/LacJ m 32782.0 0.0   1   0.0 0.0 32782.0, 32782.0 -0.48
RIIIS/J m 74214.0 0.0   1   0.0 0.0 74214.0, 74214.0 2.28
SJL/J m 23552.0 0.0   1   0.0 0.0 23552.0, 23552.0 -1.09
SM/J m 39841.0 0.0   1   0.0 0.0 39841.0, 39841.0 -0.01
SWR/J m 40270.0 0.0   1   0.0 0.0 40270.0, 40270.0 0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 28838.05 11279.9931 51843.7476 5832.3524
AXB24/PgnJ m 37664.95 11279.9931 60670.6476 14659.2524
BALB/cJ m 32779.9667 9210.0758 51564.0401 13995.8933
BXA16/PgnJ m 43624.05 11279.9931 66629.7476 20618.3524
BXD19/TyJ m 30276.45 11279.9931 53282.1476 7270.7524
BXD28/TyJ m 47284.05 11279.9931 70289.7476 24278.3524
C3H/HeJ m 41426.05 11279.9931 64431.7476 18420.3524
C57BL/6J m 40003.98 7134.094 54554.0607 25453.8993
CXB11/HiAJ m 39454.65 11279.9931 62460.3476 16448.9524
CXB12/HiAJ m 36561.95 11279.9931 59567.6476 13556.2524
CXB13/HiAJ m 42862.9333 9210.0758 61647.0067 24078.8599
CXB1/ByJ m 53277.8333 9210.0758 72061.9067 34493.7599
CXB2/ByJ m 45518.4333 9210.0758 64302.5067 26734.3599
CXB3/ByJ m 33028.1 11279.9931 56033.7976 10022.4024
CXB4/ByJ m 34002.1 11279.9931 57007.7976 10996.4024
CXB6/ByJ m 28576.9667 9210.0758 47361.0401 9792.8933
CXB8/HiAJ m 54338.9667 9210.0758 73123.0401 35554.8933
CXB9/HiAJ m 45170.7 9210.0758 63954.7734 26386.6266
DBA/2J m 35484.35 7976.1596 51751.8347 19216.8653




  GWAS USING LINEAR MIXED MODELS