Project measure / variable:   HMDPpheno9   AGPI

ID, description, units MPD:50424   AGPI   liver 1-arachidonoylglycerophosphoinositol (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-arachidonoylglycerophosphoinositol (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means735181   None
Median of the strain means694551   None
SD of the strain means± 274880
Coefficient of variation (CV)0.374
Min–max range of strain means200780   –   2068324   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 3178696398524.94 158934819926.247 1.5872 0.1167
Residuals 33 3304390936745.94 100133058689.271


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 562346.0 0.0   1   0.0 0.0 562346.0, 562346.0 -0.63
A/J m 498302.0 183781.0   2   129953.0 0.369 368349.0, 628255.0 -0.86
AKR/J m 544874.0 0.0   1   0.0 0.0 544874.0, 544874.0 -0.69
AXB10/PgnJ m 555968.0 0.0   1   0.0 0.0 555968.0, 555968.0 -0.65
AXB12/PgnJ m 1027412.0 0.0   1   0.0 0.0 1027412.0, 1027412.0 1.06
AXB13/PgnJ m 713614.0 0.0   1   0.0 0.0 713614.0, 713614.0 -0.08
AXB15/PgnJ m 962668.0 0.0   1   0.0 0.0 962668.0, 962668.0 0.83
AXB19a/PgnJ m 693344.0 0.0   1   0.0 0.0 693344.0, 693344.0 -0.15
AXB19b/PgnJ m 812936.0 0.0   1   0.0 0.0 812936.0, 812936.0 0.28
AXB19/PgnJ m 1363102.0 0.0   1   0.0 0.0 1363102.0, 1363102.0 2.28
AXB1/PgnJ m 324605.0 0.0   1   0.0 0.0 324605.0, 324605.0 -1.49
AXB23/PgnJ m 1091287.0 0.0   1   0.0 0.0 1091287.0, 1091287.0 1.3
AXB24/PgnJ m 778004.0 124164.0   2   87797.0 0.16 690206.0, 865801.0 0.16
AXB2/PgnJ m 764309.0 0.0   1   0.0 0.0 764309.0, 764309.0 0.11
AXB4/PgnJ m 712263.0 0.0   1   0.0 0.0 712263.0, 712263.0 -0.08
AXB5/PgnJ m 739651.0 0.0   1   0.0 0.0 739651.0, 739651.0 0.02
AXB6/PgnJ m 745128.0 0.0   1   0.0 0.0 745128.0, 745128.0 0.04
AXB8/PgnJ m 868928.0 0.0   1   0.0 0.0 868928.0, 868928.0 0.49
BALB/cJ m 739008.0 172837.0   3 99788.0 0.234 573858.0, 918624.0 0.01
BTBR T+ Itpr3tf/J m 340108.0 0.0   1   0.0 0.0 340108.0, 340108.0 -1.44
BUB/BnJ m 1069912.0 0.0   1   0.0 0.0 1069912.0, 1069912.0 1.22
BXA11/PgnJ m 689473.0 0.0   1   0.0 0.0 689473.0, 689473.0 -0.17
BXA12/PgnJ m 552638.0 0.0   1   0.0 0.0 552638.0, 552638.0 -0.66
BXA13/PgnJ m 653192.0 0.0   1   0.0 0.0 653192.0, 653192.0 -0.3
BXA14/PgnJ m 381718.0 0.0   1   0.0 0.0 381718.0, 381718.0 -1.29
BXA16/PgnJ m 695758.0 251438.0   2   177794.0 0.361 517964.0, 873551.0 -0.14
BXA1/PgnJ m 1147499.0 0.0   1   0.0 0.0 1147499.0, 1147499.0 1.5
BXA24/PgnJ m 799636.0 0.0   1   0.0 0.0 799636.0, 799636.0 0.23
BXA25/PgnJ m 534172.0 0.0   1   0.0 0.0 534172.0, 534172.0 -0.73
BXA26/PgnJ m 2068324.0 0.0   1   0.0 0.0 2068324.0, 2068324.0 4.85
BXA2/PgnJ m 794051.0 0.0   1   0.0 0.0 794051.0, 794051.0 0.21
BXA4/PgnJ m 338553.0 0.0   1   0.0 0.0 338553.0, 338553.0 -1.44
BXA7/PgnJ m 495055.0 0.0   1   0.0 0.0 495055.0, 495055.0 -0.87
BXA8/PgnJ m 1152643.0 0.0   1   0.0 0.0 1152643.0, 1152643.0 1.52
BXD11/TyJ m 502675.0 0.0   1   0.0 0.0 502675.0, 502675.0 -0.85
BXD12/TyJ m 656686.0 0.0   1   0.0 0.0 656686.0, 656686.0 -0.29
BXD13/TyJ m 537817.0 0.0   1   0.0 0.0 537817.0, 537817.0 -0.72
BXD14/TyJ m 655164.0 0.0   1   0.0 0.0 655164.0, 655164.0 -0.29
BXD15/TyJ m 736924.0 0.0   1   0.0 0.0 736924.0, 736924.0 0.01
BXD18/TyJ m 743076.0 0.0   1   0.0 0.0 743076.0, 743076.0 0.03
BXD19/TyJ m 660796.0 28789.0   2   20357.0 0.0436 640440.0, 681153.0 -0.27
BXD1/TyJ m 760762.0 0.0   1   0.0 0.0 760762.0, 760762.0 0.09
BXD20/TyJ m 558787.0 0.0   1   0.0 0.0 558787.0, 558787.0 -0.64
BXD21/TyJ m 399307.0 0.0   1   0.0 0.0 399307.0, 399307.0 -1.22
BXD24/TyJ-Cep290rd16/J m 500582.0 0.0   1   0.0 0.0 500582.0, 500582.0 -0.85
BXD28/TyJ m 924697.0 180819.0   2   127858.0 0.196 796839.0, 1052555.0 0.69
BXD29-Tlr4lps-2J/J m 712856.0 0.0   1   0.0 0.0 712856.0, 712856.0 -0.08
BXD2/TyJ m 608485.0 0.0   1   0.0 0.0 608485.0, 608485.0 -0.46
BXD32/TyJ m 948121.0 0.0   1   0.0 0.0 948121.0, 948121.0 0.77
BXD33/TyJ m 607979.0 0.0   1   0.0 0.0 607979.0, 607979.0 -0.46
BXD34/TyJ m 707665.0 0.0   1   0.0 0.0 707665.0, 707665.0 -0.1
BXD36/TyJ m 605880.0 0.0   1   0.0 0.0 605880.0, 605880.0 -0.47
BXD38/TyJ m 687647.0 0.0   1   0.0 0.0 687647.0, 687647.0 -0.17
BXD39/TyJ m 1209831.0 0.0   1   0.0 0.0 1209831.0, 1209831.0 1.73
BXD40/TyJ m 608556.0 0.0   1   0.0 0.0 608556.0, 608556.0 -0.46
BXD42/TyJ m 560079.0 0.0   1   0.0 0.0 560079.0, 560079.0 -0.64
BXD5/TyJ m 787952.0 0.0   1   0.0 0.0 787952.0, 787952.0 0.19
BXD6/TyJ m 473014.0 0.0   1   0.0 0.0 473014.0, 473014.0 -0.95
BXD8/TyJ m 452384.0 0.0   1   0.0 0.0 452384.0, 452384.0 -1.03
BXD9/TyJ m 904443.0 0.0   1   0.0 0.0 904443.0, 904443.0 0.62
BXH10/TyJ m 654124.0 0.0   1   0.0 0.0 654124.0, 654124.0 -0.29
BXH19/TyJ m 388978.0 0.0   1   0.0 0.0 388978.0, 388978.0 -1.26
BXH20/KccJ m 1020992.0 0.0   1   0.0 0.0 1020992.0, 1020992.0 1.04
BXH22/KccJ m 772963.0 0.0   1   0.0 0.0 772963.0, 772963.0 0.14
BXH2/TyJ m 640337.0 0.0   1   0.0 0.0 640337.0, 640337.0 -0.35
BXH4/TyJ m 556224.0 107484.0   2   76002.0 0.193 480222.0, 632226.0 -0.65
BXH6/TyJ m 522865.0 0.0   1   0.0 0.0 522865.0, 522865.0 -0.77
BXH7/TyJ m 490407.0 0.0   1   0.0 0.0 490407.0, 490407.0 -0.89
BXH8/TyJ m 721831.0 0.0   1   0.0 0.0 721831.0, 721831.0 -0.05
BXH9/TyJ m 569250.0 0.0   1   0.0 0.0 569250.0, 569250.0 -0.6
C3H/HeJ m 589832.0 173878.0   2   122950.0 0.295 466881.0, 712782.0 -0.53
C57BL/6J m 1028057.0 398943.0   5 178413.0 0.388 463089.0, 1457118.0 1.07
C57L/J m 991186.0 0.0   1   0.0 0.0 991186.0, 991186.0 0.93
C58/J m 434141.0 0.0   1   0.0 0.0 434141.0, 434141.0 -1.1
CAST/EiJ m 344709.0 0.0   1   0.0 0.0 344709.0, 344709.0 -1.42
CBA/J m 430535.0 0.0   1   0.0 0.0 430535.0, 430535.0 -1.11
CE/J m 629905.0 0.0   1   0.0 0.0 629905.0, 629905.0 -0.38
CXB11/HiAJ m 897868.0 94264.0   2   66655.0 0.105 831213.0, 964523.0 0.59
CXB12/HiAJ m 875676.0 218436.0   2   154457.0 0.249 721218.0, 1030133.0 0.51
CXB13/HiAJ m 1335430.0 287513.0   3 165996.0 0.215 1049966.0, 1624949.0 2.18
CXB1/ByJ m 859523.0 58445.0   3 33743.0 0.068 802549.0, 919334.0 0.45
CXB2/ByJ m 1081831.0 371502.0   3 214487.0 0.343 694590.0, 1435285.0 1.26
CXB3/ByJ m 822137.0 29499.0   2   20859.0 0.0359 801278.0, 842996.0 0.32
CXB4/ByJ m 1202833.0 612556.0   2   433143.0 0.509 769690.0, 1635975.0 1.7
CXB6/ByJ m 699907.0 407929.0   3 235518.0 0.583 450197.0, 1170651.0 -0.13
CXB7/ByJ m 1026580.0 259622.0   2   183580.0 0.253 843000.0, 1210161.0 1.06
CXB8/HiAJ m 1265375.0 664266.0   3 383514.0 0.525 864533.0, 2032138.0 1.93
CXB9/HiAJ m 1272233.0 281819.0   3 162708.0 0.222 983948.0, 1547107.0 1.95
DBA/2J m 675996.0 180610.0   4 90305.0 0.267 440088.0, 871092.0 -0.22
FVB/NJ m 200780.0 0.0   1   0.0 0.0 200780.0, 200780.0 -1.94
I/LnJ m 591984.0 0.0   1   0.0 0.0 591984.0, 591984.0 -0.52
KK/HlJ m 713540.0 0.0   1   0.0 0.0 713540.0, 713540.0 -0.08
LG/J m 469657.0 0.0   1   0.0 0.0 469657.0, 469657.0 -0.97
LP/J m 553909.0 0.0   1   0.0 0.0 553909.0, 553909.0 -0.66
MA/MyJ m 713198.0 0.0   1   0.0 0.0 713198.0, 713198.0 -0.08
NOD/ShiLtJ m 1079089.0 0.0   1   0.0 0.0 1079089.0, 1079089.0 1.25
NON/ShiLtJ m 676792.0 0.0   1   0.0 0.0 676792.0, 676792.0 -0.21
NZW/LacJ m 934449.0 0.0   1   0.0 0.0 934449.0, 934449.0 0.72
PL/J m 704566.0 0.0   1   0.0 0.0 704566.0, 704566.0 -0.11
RIIIS/J m 692908.0 0.0   1   0.0 0.0 692908.0, 692908.0 -0.15
SEA/GnJ m 669437.0 0.0   1   0.0 0.0 669437.0, 669437.0 -0.24
SJL/J m 423403.0 0.0   1   0.0 0.0 423403.0, 423403.0 -1.13
SM/J m 602303.0 0.0   1   0.0 0.0 602303.0, 602303.0 -0.48
SWR/J m 908400.0 0.0   1   0.0 0.0 908400.0, 908400.0 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 498301.7 223755.5124 953535.7129 43067.6871
AXB24/PgnJ m 778003.5 223755.5124 1233237.5129 322769.4871
BALB/cJ m 739008.5 182695.6109 1110705.5151 367311.4849
BXA16/PgnJ m 695757.5 223755.5124 1150991.5129 240523.4871
BXD19/TyJ m 660796.3 223755.5124 1116030.3129 205562.2871
BXD28/TyJ m 924696.8 223755.5124 1379930.8129 469462.7871
BXH4/TyJ m 556224.1 223755.5124 1011458.1129 100990.0871
C3H/HeJ m 589831.8 223755.5124 1045065.8129 134597.7871
C57BL/6J m 1028056.6 141515.4117 1315971.8699 740141.3301
CXB11/HiAJ m 897868.0 223755.5124 1353102.0129 442633.9871
CXB12/HiAJ m 875675.75 223755.5124 1330909.7629 420441.7371
CXB13/HiAJ m 1335430.1667 182695.6109 1707127.1818 963733.1516
CXB1/ByJ m 859523.1333 182695.6109 1231220.1484 487826.1182
CXB2/ByJ m 1081831.4333 182695.6109 1453528.4484 710134.4182
CXB3/ByJ m 822136.8 223755.5124 1277370.8129 366902.7871
CXB4/ByJ m 1202832.6 223755.5124 1658066.6129 747598.5871
CXB6/ByJ m 699906.8667 182695.6109 1071603.8818 328209.8516
CXB7/ByJ m 1026580.45 223755.5124 1481814.4629 571346.4371
CXB8/HiAJ m 1265374.9667 182695.6109 1637071.9818 893677.9516
CXB9/HiAJ m 1272232.8667 182695.6109 1643929.8818 900535.8516
DBA/2J m 675996.025 158219.0402 997895.0826 354096.9674




  GWAS USING LINEAR MIXED MODELS