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Project measure / variable:   HMDPpheno9   AGPA

ID, description, units MPD:50422   AGPA   liver 2-arachidonoylglycerophosphoethanolamine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-arachidonoylglycerophosphoethanolamine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means146814   None
Median of the strain means139848   None
SD of the strain means± 49784
Coefficient of variation (CV)0.339
Min–max range of strain means58130   –   326508   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 138432302392.22 6592014399.6295 2.2095 0.0192
Residuals 34 101438684648.597 2983490724.9587


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 118955.0 0.0   1   0.0 0.0 118955.0, 118955.0 -0.56
A/J m 100069.0 89760.0   2   63470.0 0.897 36599.0, 163539.0 -0.94
AKR/J m 121634.0 0.0   1   0.0 0.0 121634.0, 121634.0 -0.51
AXB10/PgnJ m 181544.0 0.0   1   0.0 0.0 181544.0, 181544.0 0.7
AXB12/PgnJ m 153746.0 0.0   1   0.0 0.0 153746.0, 153746.0 0.14
AXB13/PgnJ m 71176.0 0.0   1   0.0 0.0 71176.0, 71176.0 -1.52
AXB15/PgnJ m 125393.0 0.0   1   0.0 0.0 125393.0, 125393.0 -0.43
AXB19a/PgnJ m 153771.0 0.0   1   0.0 0.0 153771.0, 153771.0 0.14
AXB19b/PgnJ m 180063.0 29296.0   2   20716.0 0.163 159348.0, 200779.0 0.67
AXB19/PgnJ m 222994.0 0.0   1   0.0 0.0 222994.0, 222994.0 1.53
AXB1/PgnJ m 73685.0 0.0   1   0.0 0.0 73685.0, 73685.0 -1.47
AXB23/PgnJ m 209992.0 0.0   1   0.0 0.0 209992.0, 209992.0 1.27
AXB24/PgnJ m 120295.0 15125.0   2   10695.0 0.126 109600.0, 130990.0 -0.53
AXB2/PgnJ m 94865.0 0.0   1   0.0 0.0 94865.0, 94865.0 -1.04
AXB4/PgnJ m 144646.0 0.0   1   0.0 0.0 144646.0, 144646.0 -0.04
AXB5/PgnJ m 132877.0 0.0   1   0.0 0.0 132877.0, 132877.0 -0.28
AXB6/PgnJ m 237363.0 0.0   1   0.0 0.0 237363.0, 237363.0 1.82
AXB8/PgnJ m 224903.0 0.0   1   0.0 0.0 224903.0, 224903.0 1.57
BALB/cJ m 171379.0 54746.0   3 31608.0 0.319 125928.0, 232155.0 0.49
BTBR T+ Itpr3tf/J m 70451.0 0.0   1   0.0 0.0 70451.0, 70451.0 -1.53
BUB/BnJ m 173987.0 0.0   1   0.0 0.0 173987.0, 173987.0 0.55
BXA11/PgnJ m 167530.0 0.0   1   0.0 0.0 167530.0, 167530.0 0.42
BXA12/PgnJ m 61743.0 0.0   1   0.0 0.0 61743.0, 61743.0 -1.71
BXA13/PgnJ m 228103.0 0.0   1   0.0 0.0 228103.0, 228103.0 1.63
BXA14/PgnJ m 173538.0 0.0   1   0.0 0.0 173538.0, 173538.0 0.54
BXA16/PgnJ m 123930.0 34930.0   2   24700.0 0.282 99230.0, 148629.0 -0.46
BXA1/PgnJ m 240198.0 0.0   1   0.0 0.0 240198.0, 240198.0 1.88
BXA24/PgnJ m 240196.0 0.0   1   0.0 0.0 240196.0, 240196.0 1.88
BXA25/PgnJ m 103769.0 0.0   1   0.0 0.0 103769.0, 103769.0 -0.86
BXA26/PgnJ m 326508.0 0.0   1   0.0 0.0 326508.0, 326508.0 3.61
BXA2/PgnJ m 154892.0 0.0   1   0.0 0.0 154892.0, 154892.0 0.16
BXA4/PgnJ m 58130.0 0.0   1   0.0 0.0 58130.0, 58130.0 -1.78
BXA7/PgnJ m 128098.0 0.0   1   0.0 0.0 128098.0, 128098.0 -0.38
BXA8/PgnJ m 171481.0 0.0   1   0.0 0.0 171481.0, 171481.0 0.5
BXD11/TyJ m 72097.0 0.0   1   0.0 0.0 72097.0, 72097.0 -1.5
BXD12/TyJ m 126819.0 0.0   1   0.0 0.0 126819.0, 126819.0 -0.4
BXD13/TyJ m 117731.0 0.0   1   0.0 0.0 117731.0, 117731.0 -0.58
BXD14/TyJ m 144314.0 0.0   1   0.0 0.0 144314.0, 144314.0 -0.05
BXD15/TyJ m 189557.0 0.0   1   0.0 0.0 189557.0, 189557.0 0.86
BXD18/TyJ m 90281.0 0.0   1   0.0 0.0 90281.0, 90281.0 -1.14
BXD19/TyJ m 139662.0 6330.0   2   4476.0 0.0453 135186.0, 144138.0 -0.14
BXD1/TyJ m 140033.0 0.0   1   0.0 0.0 140033.0, 140033.0 -0.14
BXD20/TyJ m 105921.0 0.0   1   0.0 0.0 105921.0, 105921.0 -0.82
BXD21/TyJ m 99010.0 0.0   1   0.0 0.0 99010.0, 99010.0 -0.96
BXD22/TyJ m 187509.0 0.0   1   0.0 0.0 187509.0, 187509.0 0.82
BXD24/TyJ m 133818.0 0.0   1   0.0 0.0 133818.0, 133818.0 -0.26
BXD24/TyJ-Cep290rd16/J m 97206.0 0.0   1   0.0 0.0 97206.0, 97206.0 -1.0
BXD28/TyJ m 164643.0 24934.0   2   17631.0 0.151 147012.0, 182274.0 0.36
BXD29-Tlr4lps-2J/J m 156782.0 0.0   1   0.0 0.0 156782.0, 156782.0 0.2
BXD2/TyJ m 140209.0 0.0   1   0.0 0.0 140209.0, 140209.0 -0.13
BXD32/TyJ m 164920.0 0.0   1   0.0 0.0 164920.0, 164920.0 0.36
BXD33/TyJ m 147689.0 0.0   1   0.0 0.0 147689.0, 147689.0 0.02
BXD34/TyJ m 124934.0 0.0   1   0.0 0.0 124934.0, 124934.0 -0.44
BXD36/TyJ m 92714.0 0.0   1   0.0 0.0 92714.0, 92714.0 -1.09
BXD38/TyJ m 111833.0 0.0   1   0.0 0.0 111833.0, 111833.0 -0.7
BXD39/TyJ m 137631.0 0.0   1   0.0 0.0 137631.0, 137631.0 -0.18
BXD40/TyJ m 175525.0 0.0   1   0.0 0.0 175525.0, 175525.0 0.58
BXD42/TyJ m 138252.0 0.0   1   0.0 0.0 138252.0, 138252.0 -0.17
BXD5/TyJ m 234433.0 0.0   1   0.0 0.0 234433.0, 234433.0 1.76
BXD6/TyJ m 110985.0 0.0   1   0.0 0.0 110985.0, 110985.0 -0.72
BXD8/TyJ m 99578.0 0.0   1   0.0 0.0 99578.0, 99578.0 -0.95
BXD9/TyJ m 188593.0 0.0   1   0.0 0.0 188593.0, 188593.0 0.84
BXH10/TyJ m 155283.0 0.0   1   0.0 0.0 155283.0, 155283.0 0.17
BXH19/TyJ m 121151.0 0.0   1   0.0 0.0 121151.0, 121151.0 -0.52
BXH20/KccJ m 153536.0 0.0   1   0.0 0.0 153536.0, 153536.0 0.14
BXH22/KccJ m 202028.0 0.0   1   0.0 0.0 202028.0, 202028.0 1.11
BXH2/TyJ m 276972.0 0.0   1   0.0 0.0 276972.0, 276972.0 2.61
BXH4/TyJ m 148250.0 35134.0   2   24843.0 0.237 123407.0, 173093.0 0.03
BXH6/TyJ m 112924.0 0.0   1   0.0 0.0 112924.0, 112924.0 -0.68
BXH7/TyJ m 147344.0 0.0   1   0.0 0.0 147344.0, 147344.0 0.01
BXH8/TyJ m 217555.0 0.0   1   0.0 0.0 217555.0, 217555.0 1.42
BXH9/TyJ m 179957.0 0.0   1   0.0 0.0 179957.0, 179957.0 0.67
C3H/HeJ m 195295.0 78934.0   2   55814.0 0.404 139481.0, 251110.0 0.97
C57BL/6J m 131777.0 70382.0   5 31476.0 0.534 19264.0, 210389.0 -0.3
C57L/J m 105805.0 0.0   1   0.0 0.0 105805.0, 105805.0 -0.82
C58/J m 114448.0 0.0   1   0.0 0.0 114448.0, 114448.0 -0.65
CAST/EiJ m 130712.0 0.0   1   0.0 0.0 130712.0, 130712.0 -0.32
CBA/J m 140374.0 0.0   1   0.0 0.0 140374.0, 140374.0 -0.13
CE/J m 113646.0 0.0   1   0.0 0.0 113646.0, 113646.0 -0.67
CXB11/HiAJ m 106169.0 32740.0   2   23151.0 0.308 83019.0, 129320.0 -0.82
CXB12/HiAJ m 159318.0 96296.0   2   68092.0 0.604 91226.0, 227409.0 0.25
CXB13/HiAJ m 171843.0 18385.0   3 10615.0 0.107 160990.0, 193070.0 0.5
CXB1/ByJ m 200063.0 43168.0   3 24923.0 0.216 151883.0, 235220.0 1.07
CXB2/ByJ m 92280.0 56858.0   3 32827.0 0.616 36489.0, 150148.0 -1.1
CXB3/ByJ m 138630.0 5879.0   2   4157.0 0.0424 134473.0, 142787.0 -0.16
CXB4/ByJ m 237564.0 59263.0   2   41905.0 0.249 195658.0, 279469.0 1.82
CXB6/ByJ m 66067.0 65210.0   3 37649.0 0.987 9635.0, 137456.0 -1.62
CXB7/ByJ m 138571.0 11094.0   2   7844.0 0.0801 130726.0, 146415.0 -0.17
CXB8/HiAJ m 279669.0 93227.0   3 53825.0 0.333 187555.0, 373971.0 2.67
CXB9/HiAJ m 126689.0 51080.0   3 29491.0 0.403 69690.0, 168321.0 -0.4
DBA/2J m 102858.0 19582.0   4 9791.0 0.19 86363.0, 129602.0 -0.88
FVB/NJ m 65396.0 0.0   1   0.0 0.0 65396.0, 65396.0 -1.64
I/LnJ m 143973.0 0.0   1   0.0 0.0 143973.0, 143973.0 -0.06
KK/HlJ m 137633.0 0.0   1   0.0 0.0 137633.0, 137633.0 -0.18
LG/J m 129226.0 0.0   1   0.0 0.0 129226.0, 129226.0 -0.35
LP/J m 114813.0 0.0   1   0.0 0.0 114813.0, 114813.0 -0.64
MA/MyJ m 107737.0 0.0   1   0.0 0.0 107737.0, 107737.0 -0.78
NOD/ShiLtJ m 176633.0 0.0   1   0.0 0.0 176633.0, 176633.0 0.6
NON/ShiLtJ m 142290.0 0.0   1   0.0 0.0 142290.0, 142290.0 -0.09
NZW/LacJ m 156912.0 0.0   1   0.0 0.0 156912.0, 156912.0 0.2
PL/J m 145485.0 0.0   1   0.0 0.0 145485.0, 145485.0 -0.03
RIIIS/J m 100695.0 0.0   1   0.0 0.0 100695.0, 100695.0 -0.93
SEA/GnJ m 138862.0 0.0   1   0.0 0.0 138862.0, 138862.0 -0.16
SJL/J m 117753.0 0.0   1   0.0 0.0 117753.0, 117753.0 -0.58
SM/J m 147740.0 0.0   1   0.0 0.0 147740.0, 147740.0 0.02
SWR/J m 175746.0 0.0   1   0.0 0.0 175746.0, 175746.0 0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 100069.0 38623.1195 178560.6226 21577.3774
AXB19b/PgnJ m 180063.15 38623.1195 258554.7726 101571.5274
AXB24/PgnJ m 120294.95 38623.1195 198786.5726 41803.3274
BALB/cJ m 171379.3 31535.645 235467.4415 107291.1585
BXA16/PgnJ m 123929.75 38623.1195 202421.3726 45438.1274
BXD19/TyJ m 139662.4 38623.1195 218154.0226 61170.7774
BXD28/TyJ m 164643.2 38623.1195 243134.8226 86151.5774
BXH4/TyJ m 148250.05 38623.1195 226741.6726 69758.4274
C3H/HeJ m 195295.05 38623.1195 273786.6726 116803.4274
C57BL/6J m 131777.2 24427.4056 181419.6609 82134.7391
CXB11/HiAJ m 106169.45 38623.1195 184661.0726 27677.8274
CXB12/HiAJ m 159317.8 38623.1195 237809.4226 80826.1774
CXB13/HiAJ m 171842.8 31535.645 235930.9415 107754.6585
CXB1/ByJ m 200063.2667 31535.645 264151.4082 135975.1252
CXB2/ByJ m 92279.9 31535.645 156368.0415 28191.7585
CXB3/ByJ m 138629.7 38623.1195 217121.3226 60138.0774
CXB4/ByJ m 237563.8 38623.1195 316055.4226 159072.1774
CXB6/ByJ m 66066.8 31535.645 130154.9415 1978.6585
CXB7/ByJ m 138570.7 38623.1195 217062.3226 60079.0774
CXB8/HiAJ m 279669.3333 31535.645 343757.4748 215581.1918
CXB9/HiAJ m 126689.2333 31535.645 190777.3748 62601.0918
DBA/2J m 102857.525 27310.6697 158359.4836 47355.5664




  GWAS USING LINEAR MIXED MODELS