Phenotype measure:   HMDPpheno9   SGPE

ID, description, units MPD:50421   SGPE   liver 1-stearoylglycerophosphoethanolamine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-stearoylglycerophosphoethanolamine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means805171   None
Median of the strain means579668   None
SD of the strain means± 597169
Coefficient of variation (CV)0.742
Min–max range of strain means103291   –   3415172   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 8506272123985.52 405060577332.644 0.9835 0.5062
Residuals 31 12767713457792.7 411861724444.925


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1265773.0 0.0   1   0.0 0.0 1265773.0, 1265773.0 0.77
A/J m 286605.0 163598.0   2   115681.0 0.571 170924.0, 402286.0 -0.87
AKR/J m 139943.0 0.0   1   0.0 0.0 139943.0, 139943.0 -1.11
AXB10/PgnJ m 516846.0 0.0   1   0.0 0.0 516846.0, 516846.0 -0.48
AXB12/PgnJ m 103291.0 0.0   1   0.0 0.0 103291.0, 103291.0 -1.18
AXB13/PgnJ m 241248.0 0.0   1   0.0 0.0 241248.0, 241248.0 -0.94
AXB15/PgnJ m 400166.0 0.0   1   0.0 0.0 400166.0, 400166.0 -0.68
AXB19a/PgnJ m 753653.0 0.0   1   0.0 0.0 753653.0, 753653.0 -0.09
AXB19b/PgnJ m 1329940.0 24102.0   2   17042.0 0.0181 1312898.0, 1346983.0 0.88
AXB19/PgnJ m 1163209.0 0.0   1   0.0 0.0 1163209.0, 1163209.0 0.6
AXB1/PgnJ m 3415172.0 0.0   1   0.0 0.0 3415172.0, 3415172.0 4.37
AXB23/PgnJ m 774510.0 0.0   1   0.0 0.0 774510.0, 774510.0 -0.05
AXB24/PgnJ m 1280372.0 1628830.0   2   1151756.0 1.27 128616.0, 2432128.0 0.8
AXB2/PgnJ m 453482.0 0.0   1   0.0 0.0 453482.0, 453482.0 -0.59
AXB4/PgnJ m 865903.0 0.0   1   0.0 0.0 865903.0, 865903.0 0.1
AXB5/PgnJ m 517780.0 0.0   1   0.0 0.0 517780.0, 517780.0 -0.48
AXB6/PgnJ m 565641.0 0.0   1   0.0 0.0 565641.0, 565641.0 -0.4
AXB8/PgnJ m 408461.0 0.0   1   0.0 0.0 408461.0, 408461.0 -0.66
BALB/cJ m 801968.0 417451.0   3 241015.0 0.521 330042.0, 1122956.0 -0.01
BTBR T+ Itpr3tf/J m 511772.0 0.0   1   0.0 0.0 511772.0, 511772.0 -0.49
BUB/BnJ m 1381695.0 0.0   1   0.0 0.0 1381695.0, 1381695.0 0.97
BXA11/PgnJ m 425824.0 0.0   1   0.0 0.0 425824.0, 425824.0 -0.64
BXA12/PgnJ m 469610.0 0.0   1   0.0 0.0 469610.0, 469610.0 -0.56
BXA13/PgnJ m 572977.0 0.0   1   0.0 0.0 572977.0, 572977.0 -0.39
BXA14/PgnJ m 1611429.0 0.0   1   0.0 0.0 1611429.0, 1611429.0 1.35
BXA16/PgnJ m 464168.0 57847.0   2   40904.0 0.125 423264.0, 505072.0 -0.57
BXA1/PgnJ m 751770.0 0.0   1   0.0 0.0 751770.0, 751770.0 -0.09
BXA24/PgnJ m 617028.0 0.0   1   0.0 0.0 617028.0, 617028.0 -0.32
BXA25/PgnJ m 401662.0 0.0   1   0.0 0.0 401662.0, 401662.0 -0.68
BXA26/PgnJ m 1169806.0 0.0   1   0.0 0.0 1169806.0, 1169806.0 0.61
BXA2/PgnJ m 538134.0 0.0   1   0.0 0.0 538134.0, 538134.0 -0.45
BXA4/PgnJ m 359058.0 0.0   1   0.0 0.0 359058.0, 359058.0 -0.75
BXA7/PgnJ m 265871.0 0.0   1   0.0 0.0 265871.0, 265871.0 -0.9
BXA8/PgnJ m 211013.0 0.0   1   0.0 0.0 211013.0, 211013.0 -0.99
BXD11/TyJ m 400881.0 0.0   1   0.0 0.0 400881.0, 400881.0 -0.68
BXD12/TyJ m 1274139.0 0.0   1   0.0 0.0 1274139.0, 1274139.0 0.79
BXD13/TyJ m 640245.0 0.0   1   0.0 0.0 640245.0, 640245.0 -0.28
BXD14/TyJ m 993262.0 0.0   1   0.0 0.0 993262.0, 993262.0 0.31
BXD15/TyJ m 1272578.0 0.0   1   0.0 0.0 1272578.0, 1272578.0 0.78
BXD18/TyJ m 545439.0 0.0   1   0.0 0.0 545439.0, 545439.0 -0.43
BXD19/TyJ m 713106.0 255556.0   2   180705.0 0.358 532400.0, 893811.0 -0.15
BXD1/TyJ m 474627.0 0.0   1   0.0 0.0 474627.0, 474627.0 -0.55
BXD20/TyJ m 1334376.0 0.0   1   0.0 0.0 1334376.0, 1334376.0 0.89
BXD21/TyJ m 487815.0 0.0   1   0.0 0.0 487815.0, 487815.0 -0.53
BXD22/TyJ m 442520.0 0.0   1   0.0 0.0 442520.0, 442520.0 -0.61
BXD24/TyJ m 819034.0 0.0   1   0.0 0.0 819034.0, 819034.0 0.02
BXD24/TyJ-Cep290rd16/J m 586358.0 0.0   1   0.0 0.0 586358.0, 586358.0 -0.37
BXD28/TyJ m 472881.0 13221.0   2   9349.0 0.028 463532.0, 482230.0 -0.56
BXD29-Tlr4lps-2J/J m 518588.0 0.0   1   0.0 0.0 518588.0, 518588.0 -0.48
BXD2/TyJ m 565546.0 0.0   1   0.0 0.0 565546.0, 565546.0 -0.4
BXD32/TyJ m 144282.0 0.0   1   0.0 0.0 144282.0, 144282.0 -1.11
BXD33/TyJ m 1512423.0 0.0   1   0.0 0.0 1512423.0, 1512423.0 1.18
BXD34/TyJ m 184527.0 0.0   1   0.0 0.0 184527.0, 184527.0 -1.04
BXD36/TyJ m 194777.0 0.0   1   0.0 0.0 194777.0, 194777.0 -1.02
BXD38/TyJ m 764746.0 0.0   1   0.0 0.0 764746.0, 764746.0 -0.07
BXD39/TyJ m 310393.0 0.0   1   0.0 0.0 310393.0, 310393.0 -0.83
BXD40/TyJ m 1037389.0 0.0   1   0.0 0.0 1037389.0, 1037389.0 0.39
BXD42/TyJ m 876893.0 0.0   1   0.0 0.0 876893.0, 876893.0 0.12
BXD5/TyJ m 1733603.0 0.0   1   0.0 0.0 1733603.0, 1733603.0 1.55
BXD6/TyJ m 753539.0 0.0   1   0.0 0.0 753539.0, 753539.0 -0.09
BXD8/TyJ m 304914.0 0.0   1   0.0 0.0 304914.0, 304914.0 -0.84
BXD9/TyJ m 832333.0 0.0   1   0.0 0.0 832333.0, 832333.0 0.05
BXH10/TyJ m 505502.0 0.0   1   0.0 0.0 505502.0, 505502.0 -0.5
BXH19/TyJ m 2148824.0 0.0   1   0.0 0.0 2148824.0, 2148824.0 2.25
BXH20/KccJ m 644819.0 0.0   1   0.0 0.0 644819.0, 644819.0 -0.27
BXH22/KccJ m 568247.0 0.0   1   0.0 0.0 568247.0, 568247.0 -0.4
BXH2/TyJ m 764213.0 0.0   1   0.0 0.0 764213.0, 764213.0 -0.07
BXH4/TyJ m 1499271.0 1325376.0   2   937182.0 0.884 562088.0, 2436453.0 1.16
BXH6/TyJ m 545439.0 0.0   1   0.0 0.0 545439.0, 545439.0 -0.43
BXH7/TyJ m 2420735.0 0.0   1   0.0 0.0 2420735.0, 2420735.0 2.71
BXH8/TyJ m 545439.0 0.0   1   0.0 0.0 545439.0, 545439.0 -0.43
BXH9/TyJ m 1071596.0 0.0   1   0.0 0.0 1071596.0, 1071596.0 0.45
C3H/HeJ m 771445.0 509322.0   2   360145.0 0.66 411300.0, 1131590.0 -0.06
C57BL/6J m 363145.0 245661.0   4 122831.0 0.676 195906.0, 726138.0 -0.74
C57L/J m 446053.0 0.0   1   0.0 0.0 446053.0, 446053.0 -0.6
C58/J m 1480715.0 0.0   1   0.0 0.0 1480715.0, 1480715.0 1.13
CAST/EiJ m 524443.0 0.0   1   0.0 0.0 524443.0, 524443.0 -0.47
CBA/J m 204661.0 0.0   1   0.0 0.0 204661.0, 204661.0 -1.01
CE/J m 694720.0 0.0   1   0.0 0.0 694720.0, 694720.0 -0.18
CXB11/HiAJ m 394116.0 254439.0   2   179916.0 0.646 214201.0, 574032.0 -0.69
CXB12/HiAJ m 346047.0 256487.0   2   181364.0 0.741 164683.0, 527411.0 -0.77
CXB13/HiAJ m 1086652.0 1362221.0   3 786479.0 1.25 277709.0, 2659394.0 0.47
CXB1/ByJ m 1626090.0 900758.0   3 520053.0 0.554 626013.0, 2373612.0 1.37
CXB2/ByJ m 289680.0 39316.0   2   27800.0 0.136 261879.0, 317480.0 -0.86
CXB3/ByJ m 375277.0 178203.0   2   126008.0 0.475 249269.0, 501286.0 -0.72
CXB4/ByJ m 594988.0 206529.0   2   146038.0 0.347 448949.0, 741026.0 -0.35
CXB6/ByJ m 376980.0 575996.0   3 332551.0 1.53 16396.0, 1041272.0 -0.72
CXB7/ByJ m 614633.0 372682.0   2   263526.0 0.606 351107.0, 878158.0 -0.32
CXB8/HiAJ m 879009.0 429739.0   3 248110.0 0.489 385093.0, 1167333.0 0.12
CXB9/HiAJ m 332284.0 213298.0   2   150824.0 0.642 181460.0, 483108.0 -0.79
DBA/2J m 762819.0 488214.0   4 244107.0 0.64 425733.0, 1487071.0 -0.07
FVB/NJ m 937886.0 0.0   1   0.0 0.0 937886.0, 937886.0 0.22
I/LnJ m 2922719.0 0.0   1   0.0 0.0 2922719.0, 2922719.0 3.55
KK/HlJ m 2555296.0 0.0   1   0.0 0.0 2555296.0, 2555296.0 2.93
LG/J m 1344870.0 0.0   1   0.0 0.0 1344870.0, 1344870.0 0.9
LP/J m 451133.0 0.0   1   0.0 0.0 451133.0, 451133.0 -0.59
MA/MyJ m 528789.0 0.0   1   0.0 0.0 528789.0, 528789.0 -0.46
NOD/ShiLtJ m 420994.0 0.0   1   0.0 0.0 420994.0, 420994.0 -0.64
NON/ShiLtJ m 1769943.0 0.0   1   0.0 0.0 1769943.0, 1769943.0 1.62
NZW/LacJ m 501450.0 0.0   1   0.0 0.0 501450.0, 501450.0 -0.51
PL/J m 1441398.0 0.0   1   0.0 0.0 1441398.0, 1441398.0 1.07
RIIIS/J m 234366.0 0.0   1   0.0 0.0 234366.0, 234366.0 -0.96
SEA/GnJ m 1133580.0 0.0   1   0.0 0.0 1133580.0, 1133580.0 0.55
SJL/J m 1929531.0 0.0   1   0.0 0.0 1929531.0, 1929531.0 1.88
SM/J m 466892.0 0.0   1   0.0 0.0 466892.0, 466892.0 -0.57
SWR/J m 604403.0 0.0   1   0.0 0.0 604403.0, 604403.0 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 286604.65 453796.058 1212127.8121 0.0
AXB19b/PgnJ m 1329940.25 453796.058 2255463.4121 404417.0879
AXB24/PgnJ m 1280372.1 453796.058 2205895.2621 354848.9379
BALB/cJ m 801968.2 370522.9298 1557654.6975 46281.7025
BXA16/PgnJ m 464168.2 453796.058 1389691.3621 0.0
BXD19/TyJ m 713105.65 453796.058 1638628.8121 0.0
BXD28/TyJ m 472880.95 453796.058 1398404.1121 0.0
BXH4/TyJ m 1499270.7 453796.058 2424793.8621 573747.5379
C3H/HeJ m 771444.75 453796.058 1696967.9121 0.0
C57BL/6J m 363144.675 320882.2699 1017588.3791 0.0
CXB11/HiAJ m 394116.2 453796.058 1319639.3621 0.0
CXB12/HiAJ m 346046.9 453796.058 1271570.0621 0.0
CXB13/HiAJ m 1086652.4333 370522.9298 1842338.9308 330965.9359
CXB1/ByJ m 1626090.2667 370522.9298 2381776.7641 870403.7692
CXB2/ByJ m 289679.9 453796.058 1215203.0621 0.0
CXB3/ByJ m 375277.2 453796.058 1300800.3621 0.0
CXB4/ByJ m 594987.65 453796.058 1520510.8121 0.0
CXB6/ByJ m 376980.4 370522.9298 1132666.8975 0.0
CXB7/ByJ m 614632.55 453796.058 1540155.7121 0.0
CXB8/HiAJ m 879009.1333 370522.9298 1634695.6308 123322.6359
CXB9/HiAJ m 332284.15 453796.058 1257807.3121 0.0
DBA/2J m 762818.975 320882.2699 1417262.6791 108375.2709




  GWAS USING LINEAR MIXED MODELS