Phenotype measure:   HMDPpheno9   SGPC_2

ID, description, units MPD:50420   SGPC_2   liver 2-stearoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   91 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-stearoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested91 strains
Mean of the strain means151479   None
Median of the strain means123675   None
SD of the strain means± 128262
Coefficient of variation (CV)0.847
Min–max range of strain means21866   –   1032602   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 127340276676.293 9795405898.1764 1.5 0.2051
Residuals 19 124075870989.883 6530308999.4675


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 165781.0 0.0   1   0.0 0.0 165781.0, 165781.0 0.11
AKR/J m 93154.0 0.0   1   0.0 0.0 93154.0, 93154.0 -0.45
AXB12/PgnJ m 41052.0 0.0   1   0.0 0.0 41052.0, 41052.0 -0.86
AXB13/PgnJ m 35005.0 0.0   1   0.0 0.0 35005.0, 35005.0 -0.91
AXB19a/PgnJ m 117999.0 0.0   1   0.0 0.0 117999.0, 117999.0 -0.26
AXB19b/PgnJ m 320725.0 132453.0   2   93658.0 0.413 227067.0, 414383.0 1.32
AXB19/PgnJ m 120275.0 0.0   1   0.0 0.0 120275.0, 120275.0 -0.24
AXB1/PgnJ m 297040.0 0.0   1   0.0 0.0 297040.0, 297040.0 1.13
AXB23/PgnJ m 292614.0 0.0   1   0.0 0.0 292614.0, 292614.0 1.1
AXB24/PgnJ m 329325.0 0.0   1   0.0 0.0 329325.0, 329325.0 1.39
AXB2/PgnJ m 157134.0 0.0   1   0.0 0.0 157134.0, 157134.0 0.04
AXB6/PgnJ m 66554.0 0.0   1   0.0 0.0 66554.0, 66554.0 -0.66
AXB8/PgnJ m 82324.0 0.0   1   0.0 0.0 82324.0, 82324.0 -0.54
BALB/cJ m 95725.0 37310.0   3 21541.0 0.39 62955.0, 136330.0 -0.43
BTBR T+ Itpr3tf/J m 166348.0 0.0   1   0.0 0.0 166348.0, 166348.0 0.12
BUB/BnJ m 166556.0 0.0   1   0.0 0.0 166556.0, 166556.0 0.12
BXA13/PgnJ m 163895.0 0.0   1   0.0 0.0 163895.0, 163895.0 0.1
BXA14/PgnJ m 215237.0 0.0   1   0.0 0.0 215237.0, 215237.0 0.5
BXA16/PgnJ m 89294.0 19051.0   2   13471.0 0.213 75823.0, 102765.0 -0.48
BXA24/PgnJ m 89219.0 0.0   1   0.0 0.0 89219.0, 89219.0 -0.49
BXA25/PgnJ m 65450.0 0.0   1   0.0 0.0 65450.0, 65450.0 -0.67
BXA26/PgnJ m 415914.0 0.0   1   0.0 0.0 415914.0, 415914.0 2.06
BXA2/PgnJ m 118346.0 0.0   1   0.0 0.0 118346.0, 118346.0 -0.26
BXA4/PgnJ m 157264.0 0.0   1   0.0 0.0 157264.0, 157264.0 0.05
BXA7/PgnJ m 155184.0 0.0   1   0.0 0.0 155184.0, 155184.0 0.03
BXA8/PgnJ m 98381.0 0.0   1   0.0 0.0 98381.0, 98381.0 -0.41
BXD12/TyJ m 166062.0 0.0   1   0.0 0.0 166062.0, 166062.0 0.11
BXD13/TyJ m 56076.0 0.0   1   0.0 0.0 56076.0, 56076.0 -0.74
BXD14/TyJ m 117767.0 0.0   1   0.0 0.0 117767.0, 117767.0 -0.26
BXD15/TyJ m 136678.0 0.0   1   0.0 0.0 136678.0, 136678.0 -0.12
BXD18/TyJ m 21866.0 0.0   1   0.0 0.0 21866.0, 21866.0 -1.01
BXD19/TyJ m 65319.0 49124.0   2   34736.0 0.752 30583.0, 100055.0 -0.67
BXD1/TyJ m 40671.0 0.0   1   0.0 0.0 40671.0, 40671.0 -0.86
BXD20/TyJ m 58172.0 0.0   1   0.0 0.0 58172.0, 58172.0 -0.73
BXD21/TyJ m 42565.0 0.0   1   0.0 0.0 42565.0, 42565.0 -0.85
BXD22/TyJ m 73410.0 0.0   1   0.0 0.0 73410.0, 73410.0 -0.61
BXD24/TyJ m 79496.0 0.0   1   0.0 0.0 79496.0, 79496.0 -0.56
BXD24/TyJ-Cep290rd16/J m 105868.0 0.0   1   0.0 0.0 105868.0, 105868.0 -0.36
BXD28/TyJ m 69453.0 0.0   1   0.0 0.0 69453.0, 69453.0 -0.64
BXD29-Tlr4lps-2J/J m 91053.0 0.0   1   0.0 0.0 91053.0, 91053.0 -0.47
BXD2/TyJ m 123675.0 0.0   1   0.0 0.0 123675.0, 123675.0 -0.22
BXD32/TyJ m 35080.0 0.0   1   0.0 0.0 35080.0, 35080.0 -0.91
BXD33/TyJ m 217142.0 0.0   1   0.0 0.0 217142.0, 217142.0 0.51
BXD34/TyJ m 59257.0 0.0   1   0.0 0.0 59257.0, 59257.0 -0.72
BXD36/TyJ m 110222.0 0.0   1   0.0 0.0 110222.0, 110222.0 -0.32
BXD39/TyJ m 106772.0 0.0   1   0.0 0.0 106772.0, 106772.0 -0.35
BXD40/TyJ m 92265.0 0.0   1   0.0 0.0 92265.0, 92265.0 -0.46
BXD42/TyJ m 65428.0 0.0   1   0.0 0.0 65428.0, 65428.0 -0.67
BXD5/TyJ m 70268.0 0.0   1   0.0 0.0 70268.0, 70268.0 -0.63
BXD6/TyJ m 154765.0 0.0   1   0.0 0.0 154765.0, 154765.0 0.03
BXD9/TyJ m 163127.0 0.0   1   0.0 0.0 163127.0, 163127.0 0.09
BXH19/TyJ m 505724.0 0.0   1   0.0 0.0 505724.0, 505724.0 2.76
BXH20/KccJ m 156735.0 0.0   1   0.0 0.0 156735.0, 156735.0 0.04
BXH22/KccJ m 125082.0 0.0   1   0.0 0.0 125082.0, 125082.0 -0.21
BXH2/TyJ m 118346.0 0.0   1   0.0 0.0 118346.0, 118346.0 -0.26
BXH4/TyJ m 177127.0 139555.0   2   98681.0 0.788 78446.0, 275807.0 0.2
BXH6/TyJ m 169686.0 0.0   1   0.0 0.0 169686.0, 169686.0 0.14
BXH7/TyJ m 400838.0 0.0   1   0.0 0.0 400838.0, 400838.0 1.94
BXH8/TyJ m 162251.0 0.0   1   0.0 0.0 162251.0, 162251.0 0.08
BXH9/TyJ m 96445.0 0.0   1   0.0 0.0 96445.0, 96445.0 -0.43
C3H/HeJ m 140294.0 40191.0   2   28419.0 0.286 111874.0, 168713.0 -0.09
C57BL/6J m 70521.0 42414.0   3 24488.0 0.601 21721.0, 98505.0 -0.63
C57L/J m 27626.0 0.0   1   0.0 0.0 27626.0, 27626.0 -0.97
C58/J m 215520.0 0.0   1   0.0 0.0 215520.0, 215520.0 0.5
CAST/EiJ m 185644.0 0.0   1   0.0 0.0 185644.0, 185644.0 0.27
CBA/J m 72827.0 0.0   1   0.0 0.0 72827.0, 72827.0 -0.61
CE/J m 137859.0 0.0   1   0.0 0.0 137859.0, 137859.0 -0.11
CXB11/HiAJ m 187457.0 0.0   1   0.0 0.0 187457.0, 187457.0 0.28
CXB12/HiAJ m 91426.0 0.0   1   0.0 0.0 91426.0, 91426.0 -0.47
CXB13/HiAJ m 157718.0 145490.0   3 83999.0 0.922 35555.0, 318672.0 0.05
CXB1/ByJ m 173727.0 104446.0   3 60302.0 0.601 63597.0, 271365.0 0.17
CXB2/ByJ m 77003.0 0.0   1   0.0 0.0 77003.0, 77003.0 -0.58
CXB3/ByJ m 163423.0 13978.0   2   9884.0 0.0855 153539.0, 173307.0 0.09
CXB4/ByJ m 75130.0 0.0   1   0.0 0.0 75130.0, 75130.0 -0.6
CXB6/ByJ m 77501.0 30238.0   2   21382.0 0.39 56119.0, 98882.0 -0.58
CXB7/ByJ m 78720.0 20350.0   2   14390.0 0.259 64330.0, 93110.0 -0.57
CXB8/HiAJ m 152395.0 91259.0   2   64530.0 0.599 87865.0, 216924.0 0.01
CXB9/HiAJ m 214462.0 0.0   1   0.0 0.0 214462.0, 214462.0 0.49
DBA/2J m 103405.0 33754.0   3 19488.0 0.326 64430.0, 123066.0 -0.37
FVB/NJ m 239218.0 0.0   1   0.0 0.0 239218.0, 239218.0 0.68
I/LnJ m 132378.0 0.0   1   0.0 0.0 132378.0, 132378.0 -0.15
KK/HlJ m 255992.0 0.0   1   0.0 0.0 255992.0, 255992.0 0.81
LG/J m 292221.0 0.0   1   0.0 0.0 292221.0, 292221.0 1.1
LP/J m 209579.0 0.0   1   0.0 0.0 209579.0, 209579.0 0.45
NON/ShiLtJ m 1032602.0 0.0   1   0.0 0.0 1032602.0, 1032602.0 6.87
NZW/LacJ m 124818.0 0.0   1   0.0 0.0 124818.0, 124818.0 -0.21
PL/J m 210388.0 0.0   1   0.0 0.0 210388.0, 210388.0 0.46
SEA/GnJ m 102400.0 0.0   1   0.0 0.0 102400.0, 102400.0 -0.38
SJL/J m 134293.0 0.0   1   0.0 0.0 134293.0, 134293.0 -0.13
SM/J m 226968.0 0.0   1   0.0 0.0 226968.0, 226968.0 0.59
SWR/J m 70628.0 0.0   1   0.0 0.0 70628.0, 70628.0 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB19b/PgnJ m 320724.85 57141.5304 440323.4477 201126.2523
BALB/cJ m 95725.3667 46655.8642 193377.2128 0.0
BXA16/PgnJ m 89293.9 57141.5304 208892.4977 0.0
BXD19/TyJ m 65319.1 57141.5304 184917.6977 0.0
BXH4/TyJ m 177126.8 57141.5304 296725.3977 57528.2023
C3H/HeJ m 140293.85 57141.5304 259892.4477 20695.2523
C57BL/6J m 70521.0333 46655.8642 168172.8794 0.0
CXB13/HiAJ m 157717.6667 46655.8642 255369.5128 60065.8206
CXB1/ByJ m 173726.8667 46655.8642 271378.7128 76075.0206
CXB3/ByJ m 163422.85 57141.5304 283021.4477 43824.2523
CXB6/ByJ m 77500.75 57141.5304 197099.3477 0.0
CXB7/ByJ m 78720.05 57141.5304 198318.6477 0.0
CXB8/HiAJ m 152394.55 57141.5304 271993.1477 32795.9523
DBA/2J m 103405.3667 46655.8642 201057.2128 5753.5206




  GWAS USING LINEAR MIXED MODELS