Phenotype measure:   HMDPpheno9   POGPC

ID, description, units MPD:50418   POGPC   liver 1-palmitoleoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno9 - liver 1-palmitoleoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means342531   None
Median of the strain means285023   None
SD of the strain means± 209349
Coefficient of variation (CV)0.611
Min–max range of strain means94665   –   1403614   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 848466776985.142 40403179856.4353 1.5537 0.1295
Residuals 31 806158115065.405 26005100485.9808


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 929274.0 0.0   1   0.0 0.0 929274.0, 929274.0 2.8
A/J m 300126.0 270381.0   2   191188.0 0.901 108937.0, 491314.0 -0.2
AKR/J m 214930.0 0.0   1   0.0 0.0 214930.0, 214930.0 -0.61
AXB10/PgnJ m 432934.0 0.0   1   0.0 0.0 432934.0, 432934.0 0.43
AXB12/PgnJ m 251866.0 0.0   1   0.0 0.0 251866.0, 251866.0 -0.43
AXB13/PgnJ m 203340.0 0.0   1   0.0 0.0 203340.0, 203340.0 -0.66
AXB15/PgnJ m 200714.0 0.0   1   0.0 0.0 200714.0, 200714.0 -0.68
AXB19a/PgnJ m 248982.0 0.0   1   0.0 0.0 248982.0, 248982.0 -0.45
AXB19b/PgnJ m 431088.0 240715.0   2   170211.0 0.558 260877.0, 601300.0 0.42
AXB19/PgnJ m 446424.0 0.0   1   0.0 0.0 446424.0, 446424.0 0.5
AXB1/PgnJ m 971784.0 0.0   1   0.0 0.0 971784.0, 971784.0 3.01
AXB23/PgnJ m 649878.0 0.0   1   0.0 0.0 649878.0, 649878.0 1.47
AXB24/PgnJ m 384960.0 348526.0   2   246445.0 0.905 138515.0, 631405.0 0.2
AXB2/PgnJ m 489664.0 0.0   1   0.0 0.0 489664.0, 489664.0 0.7
AXB4/PgnJ m 264789.0 0.0   1   0.0 0.0 264789.0, 264789.0 -0.37
AXB5/PgnJ m 321130.0 0.0   1   0.0 0.0 321130.0, 321130.0 -0.1
AXB6/PgnJ m 266096.0 0.0   1   0.0 0.0 266096.0, 266096.0 -0.37
AXB8/PgnJ m 248851.0 0.0   1   0.0 0.0 248851.0, 248851.0 -0.45
BALB/cJ m 173634.0 107542.0   3 62089.0 0.619 76448.0, 289170.0 -0.81
BTBR T+ Itpr3tf/J m 249923.0 0.0   1   0.0 0.0 249923.0, 249923.0 -0.44
BUB/BnJ m 364969.0 0.0   1   0.0 0.0 364969.0, 364969.0 0.11
BXA11/PgnJ m 270110.0 0.0   1   0.0 0.0 270110.0, 270110.0 -0.35
BXA12/PgnJ m 312625.0 0.0   1   0.0 0.0 312625.0, 312625.0 -0.14
BXA13/PgnJ m 284558.0 0.0   1   0.0 0.0 284558.0, 284558.0 -0.28
BXA14/PgnJ m 623936.0 0.0   1   0.0 0.0 623936.0, 623936.0 1.34
BXA16/PgnJ m 364850.0 70558.0   2   49892.0 0.193 314958.0, 414742.0 0.11
BXA1/PgnJ m 402363.0 0.0   1   0.0 0.0 402363.0, 402363.0 0.29
BXA24/PgnJ m 306820.0 0.0   1   0.0 0.0 306820.0, 306820.0 -0.17
BXA25/PgnJ m 322921.0 0.0   1   0.0 0.0 322921.0, 322921.0 -0.09
BXA26/PgnJ m 1156112.0 0.0   1   0.0 0.0 1156112.0, 1156112.0 3.89
BXA2/PgnJ m 399088.0 0.0   1   0.0 0.0 399088.0, 399088.0 0.27
BXA4/PgnJ m 463798.0 0.0   1   0.0 0.0 463798.0, 463798.0 0.58
BXA7/PgnJ m 415724.0 0.0   1   0.0 0.0 415724.0, 415724.0 0.35
BXA8/PgnJ m 350913.0 0.0   1   0.0 0.0 350913.0, 350913.0 0.04
BXD11/TyJ m 426388.0 0.0   1   0.0 0.0 426388.0, 426388.0 0.4
BXD12/TyJ m 486613.0 0.0   1   0.0 0.0 486613.0, 486613.0 0.69
BXD13/TyJ m 222088.0 0.0   1   0.0 0.0 222088.0, 222088.0 -0.58
BXD14/TyJ m 607866.0 0.0   1   0.0 0.0 607866.0, 607866.0 1.27
BXD15/TyJ m 286183.0 0.0   1   0.0 0.0 286183.0, 286183.0 -0.27
BXD18/TyJ m 211982.0 0.0   1   0.0 0.0 211982.0, 211982.0 -0.62
BXD19/TyJ m 392178.0 94102.0   2   66541.0 0.24 325638.0, 458719.0 0.24
BXD1/TyJ m 229758.0 0.0   1   0.0 0.0 229758.0, 229758.0 -0.54
BXD20/TyJ m 279024.0 0.0   1   0.0 0.0 279024.0, 279024.0 -0.3
BXD21/TyJ m 276731.0 0.0   1   0.0 0.0 276731.0, 276731.0 -0.31
BXD22/TyJ m 159041.0 0.0   1   0.0 0.0 159041.0, 159041.0 -0.88
BXD24/TyJ m 275164.0 0.0   1   0.0 0.0 275164.0, 275164.0 -0.32
BXD24/TyJ-Cep290rd16/J m 196350.0 0.0   1   0.0 0.0 196350.0, 196350.0 -0.7
BXD28/TyJ m 227049.0 15985.0   2   11303.0 0.0704 215746.0, 238351.0 -0.55
BXD29-Tlr4lps-2J/J m 267532.0 0.0   1   0.0 0.0 267532.0, 267532.0 -0.36
BXD2/TyJ m 162779.0 0.0   1   0.0 0.0 162779.0, 162779.0 -0.86
BXD32/TyJ m 217766.0 0.0   1   0.0 0.0 217766.0, 217766.0 -0.6
BXD33/TyJ m 353465.0 0.0   1   0.0 0.0 353465.0, 353465.0 0.05
BXD34/TyJ m 138828.0 0.0   1   0.0 0.0 138828.0, 138828.0 -0.97
BXD38/TyJ m 283120.0 0.0   1   0.0 0.0 283120.0, 283120.0 -0.28
BXD39/TyJ m 456652.0 0.0   1   0.0 0.0 456652.0, 456652.0 0.55
BXD40/TyJ m 289599.0 0.0   1   0.0 0.0 289599.0, 289599.0 -0.25
BXD42/TyJ m 309596.0 0.0   1   0.0 0.0 309596.0, 309596.0 -0.16
BXD5/TyJ m 360446.0 0.0   1   0.0 0.0 360446.0, 360446.0 0.09
BXD6/TyJ m 395482.0 0.0   1   0.0 0.0 395482.0, 395482.0 0.25
BXD8/TyJ m 202089.0 0.0   1   0.0 0.0 202089.0, 202089.0 -0.67
BXD9/TyJ m 268187.0 0.0   1   0.0 0.0 268187.0, 268187.0 -0.36
BXH10/TyJ m 251499.0 0.0   1   0.0 0.0 251499.0, 251499.0 -0.43
BXH19/TyJ m 1024293.0 0.0   1   0.0 0.0 1024293.0, 1024293.0 3.26
BXH20/KccJ m 273596.0 0.0   1   0.0 0.0 273596.0, 273596.0 -0.33
BXH22/KccJ m 287334.0 0.0   1   0.0 0.0 287334.0, 287334.0 -0.26
BXH2/TyJ m 424278.0 0.0   1   0.0 0.0 424278.0, 424278.0 0.39
BXH4/TyJ m 209903.0 35801.0   2   25315.0 0.171 184588.0, 235218.0 -0.63
BXH6/TyJ m 323784.0 0.0   1   0.0 0.0 323784.0, 323784.0 -0.09
BXH7/TyJ m 728461.0 0.0   1   0.0 0.0 728461.0, 728461.0 1.84
BXH8/TyJ m 338795.0 0.0   1   0.0 0.0 338795.0, 338795.0 -0.02
BXH9/TyJ m 234660.0 0.0   1   0.0 0.0 234660.0, 234660.0 -0.52
C3H/HeJ m 274191.0 74920.0   2   52976.0 0.273 221215.0, 327168.0 -0.33
C57BL/6J m 186025.0 97432.0   5 43573.0 0.524 35408.0, 297837.0 -0.75
C57L/J m 167325.0 0.0   1   0.0 0.0 167325.0, 167325.0 -0.84
C58/J m 419589.0 0.0   1   0.0 0.0 419589.0, 419589.0 0.37
CAST/EiJ m 255945.0 0.0   1   0.0 0.0 255945.0, 255945.0 -0.41
CBA/J m 368155.0 0.0   1   0.0 0.0 368155.0, 368155.0 0.12
CE/J m 293434.0 0.0   1   0.0 0.0 293434.0, 293434.0 -0.23
CXB11/HiAJ m 155466.0 129496.0   2   91568.0 0.833 63898.0, 247033.0 -0.89
CXB12/HiAJ m 94665.0 45955.0   2   32495.0 0.485 62170.0, 127160.0 -1.18
CXB13/HiAJ m 184359.0 58435.0   3 33737.0 0.317 133389.0, 248135.0 -0.76
CXB1/ByJ m 611846.0 273579.0   3 157951.0 0.447 439449.0, 927293.0 1.29
CXB2/ByJ m 237618.0 3248.0   2   2297.0 0.0137 235321.0, 239915.0 -0.5
CXB3/ByJ m 297624.0 31764.0   2   22461.0 0.107 275164.0, 320085.0 -0.21
CXB4/ByJ m 238551.0 58926.0   2   41667.0 0.247 196884.0, 280218.0 -0.5
CXB6/ByJ m 139885.0 145939.0   2   103194.0 1.04 36691.0, 243080.0 -0.97
CXB7/ByJ m 183633.0 50074.0   2   35408.0 0.273 148225.0, 219040.0 -0.76
CXB8/HiAJ m 246367.0 23009.0   3 13284.0 0.0934 223114.0, 269123.0 -0.46
CXB9/HiAJ m 115058.0 76008.0   2   53746.0 0.661 61312.0, 168804.0 -1.09
DBA/2J m 413215.0 294967.0   4 147483.0 0.714 246645.0, 854231.0 0.34
FVB/NJ m 194896.0 0.0   1   0.0 0.0 194896.0, 194896.0 -0.71
I/LnJ m 156524.0 0.0   1   0.0 0.0 156524.0, 156524.0 -0.89
KK/HlJ m 288939.0 0.0   1   0.0 0.0 288939.0, 288939.0 -0.26
LG/J m 402476.0 0.0   1   0.0 0.0 402476.0, 402476.0 0.29
LP/J m 248487.0 0.0   1   0.0 0.0 248487.0, 248487.0 -0.45
MA/MyJ m 383979.0 0.0   1   0.0 0.0 383979.0, 383979.0 0.2
NOD/ShiLtJ m 393370.0 0.0   1   0.0 0.0 393370.0, 393370.0 0.24
NON/ShiLtJ m 1403614.0 0.0   1   0.0 0.0 1403614.0, 1403614.0 5.07
NZW/LacJ m 205739.0 0.0   1   0.0 0.0 205739.0, 205739.0 -0.65
PL/J m 314712.0 0.0   1   0.0 0.0 314712.0, 314712.0 -0.13
RIIIS/J m 106229.0 0.0   1   0.0 0.0 106229.0, 106229.0 -1.13
SEA/GnJ m 285023.0 0.0   1   0.0 0.0 285023.0, 285023.0 -0.27
SJL/J m 372285.0 0.0   1   0.0 0.0 372285.0, 372285.0 0.14
SM/J m 282140.0 0.0   1   0.0 0.0 282140.0, 282140.0 -0.29
SWR/J m 246700.0 0.0   1   0.0 0.0 246700.0, 246700.0 -0.46


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 300125.55 114028.7255 532688.669 67562.431
AXB19b/PgnJ m 431088.4 114028.7255 663651.519 198525.281
AXB24/PgnJ m 384959.6 114028.7255 617522.719 152396.481
BALB/cJ m 173634.1667 93104.0645 363521.1582 0.0
BXA16/PgnJ m 364849.7 114028.7255 597412.819 132286.581
BXD19/TyJ m 392178.3 114028.7255 624741.419 159615.181
BXD28/TyJ m 227048.55 114028.7255 459611.669 0.0
BXH4/TyJ m 209903.25 114028.7255 442466.369 0.0
C3H/HeJ m 274191.15 114028.7255 506754.269 41628.031
C57BL/6J m 186024.66 72118.0983 333110.4911 38938.8289
CXB11/HiAJ m 155465.5 114028.7255 388028.619 0.0
CXB12/HiAJ m 94665.0 114028.7255 327228.119 0.0
CXB13/HiAJ m 184359.2 93104.0645 374246.1915 0.0
CXB1/ByJ m 611845.5667 93104.0645 801732.5582 421958.5752
CXB2/ByJ m 237617.9 114028.7255 470181.019 5054.781
CXB3/ByJ m 297624.45 114028.7255 530187.569 65061.331
CXB4/ByJ m 238550.6 114028.7255 471113.719 5987.481
CXB6/ByJ m 139885.45 114028.7255 372448.569 0.0
CXB7/ByJ m 183632.65 114028.7255 416195.769 0.0
CXB8/HiAJ m 246367.3 93104.0645 436254.2915 56480.3085
CXB9/HiAJ m 115057.7 114028.7255 347620.819 0.0
DBA/2J m 413215.325 80630.4851 577662.2835 248768.3665




  GWAS USING LINEAR MIXED MODELS