Phenotype measure:   HMDPpheno9   PGPC_2

ID, description, units MPD:50417   PGPC_2   liver 2-palmitoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-palmitoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means438207   None
Median of the strain means342420   None
SD of the strain means± 304288
Coefficient of variation (CV)0.694
Min–max range of strain means133767   –   1921732   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2050498872764.53 97642803464.9778 1.711 0.0872
Residuals 30 1712056731358.02 57068557711.9339


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 981732.0 0.0   1   0.0 0.0 981732.0, 981732.0 1.79
A/J m 202578.0 145731.0   2   103048.0 0.719 99530.0, 305625.0 -0.77
AKR/J m 419993.0 0.0   1   0.0 0.0 419993.0, 419993.0 -0.06
AXB10/PgnJ m 214604.0 0.0   1   0.0 0.0 214604.0, 214604.0 -0.73
AXB12/PgnJ m 295167.0 0.0   1   0.0 0.0 295167.0, 295167.0 -0.47
AXB13/PgnJ m 149672.0 0.0   1   0.0 0.0 149672.0, 149672.0 -0.95
AXB15/PgnJ m 135351.0 0.0   1   0.0 0.0 135351.0, 135351.0 -1.0
AXB19a/PgnJ m 415396.0 0.0   1   0.0 0.0 415396.0, 415396.0 -0.07
AXB19b/PgnJ m 951652.0 210159.0   2   148605.0 0.221 803047.0, 1100257.0 1.69
AXB19/PgnJ m 780577.0 0.0   1   0.0 0.0 780577.0, 780577.0 1.13
AXB1/PgnJ m 1921732.0 0.0   1   0.0 0.0 1921732.0, 1921732.0 4.88
AXB23/PgnJ m 541316.0 0.0   1   0.0 0.0 541316.0, 541316.0 0.34
AXB24/PgnJ m 346740.0 328172.0   2   232052.0 0.946 114688.0, 578793.0 -0.3
AXB2/PgnJ m 334333.0 0.0   1   0.0 0.0 334333.0, 334333.0 -0.34
AXB4/PgnJ m 325056.0 0.0   1   0.0 0.0 325056.0, 325056.0 -0.37
AXB5/PgnJ m 204029.0 0.0   1   0.0 0.0 204029.0, 204029.0 -0.77
AXB6/PgnJ m 364319.0 0.0   1   0.0 0.0 364319.0, 364319.0 -0.24
AXB8/PgnJ m 208145.0 0.0   1   0.0 0.0 208145.0, 208145.0 -0.76
BALB/cJ m 298258.0 100248.0   3 57878.0 0.336 187417.0, 382582.0 -0.46
BTBR T+ Itpr3tf/J m 343617.0 0.0   1   0.0 0.0 343617.0, 343617.0 -0.31
BUB/BnJ m 631400.0 0.0   1   0.0 0.0 631400.0, 631400.0 0.63
BXA11/PgnJ m 327444.0 0.0   1   0.0 0.0 327444.0, 327444.0 -0.36
BXA12/PgnJ m 231122.0 0.0   1   0.0 0.0 231122.0, 231122.0 -0.68
BXA13/PgnJ m 810101.0 0.0   1   0.0 0.0 810101.0, 810101.0 1.22
BXA14/PgnJ m 975792.0 0.0   1   0.0 0.0 975792.0, 975792.0 1.77
BXA16/PgnJ m 264274.0 17221.0   2   12177.0 0.0652 252097.0, 276451.0 -0.57
BXA1/PgnJ m 392924.0 0.0   1   0.0 0.0 392924.0, 392924.0 -0.15
BXA24/PgnJ m 397767.0 0.0   1   0.0 0.0 397767.0, 397767.0 -0.13
BXA25/PgnJ m 217813.0 0.0   1   0.0 0.0 217813.0, 217813.0 -0.72
BXA26/PgnJ m 743885.0 0.0   1   0.0 0.0 743885.0, 743885.0 1.0
BXA2/PgnJ m 312853.0 0.0   1   0.0 0.0 312853.0, 312853.0 -0.41
BXA4/PgnJ m 673240.0 0.0   1   0.0 0.0 673240.0, 673240.0 0.77
BXA7/PgnJ m 411061.0 0.0   1   0.0 0.0 411061.0, 411061.0 -0.09
BXA8/PgnJ m 321837.0 0.0   1   0.0 0.0 321837.0, 321837.0 -0.38
BXD11/TyJ m 206102.0 0.0   1   0.0 0.0 206102.0, 206102.0 -0.76
BXD12/TyJ m 687864.0 0.0   1   0.0 0.0 687864.0, 687864.0 0.82
BXD13/TyJ m 292776.0 0.0   1   0.0 0.0 292776.0, 292776.0 -0.48
BXD14/TyJ m 550622.0 0.0   1   0.0 0.0 550622.0, 550622.0 0.37
BXD15/TyJ m 544943.0 0.0   1   0.0 0.0 544943.0, 544943.0 0.35
BXD18/TyJ m 239788.0 0.0   1   0.0 0.0 239788.0, 239788.0 -0.65
BXD19/TyJ m 306634.0 47923.0   2   33886.0 0.156 272748.0, 340521.0 -0.43
BXD1/TyJ m 341223.0 0.0   1   0.0 0.0 341223.0, 341223.0 -0.32
BXD20/TyJ m 343892.0 0.0   1   0.0 0.0 343892.0, 343892.0 -0.31
BXD21/TyJ m 148019.0 0.0   1   0.0 0.0 148019.0, 148019.0 -0.95
BXD22/TyJ m 339266.0 0.0   1   0.0 0.0 339266.0, 339266.0 -0.33
BXD24/TyJ m 196021.0 0.0   1   0.0 0.0 196021.0, 196021.0 -0.8
BXD24/TyJ-Cep290rd16/J m 228245.0 0.0   1   0.0 0.0 228245.0, 228245.0 -0.69
BXD28/TyJ m 205726.0 5307.0   2   3753.0 0.0258 201973.0, 209478.0 -0.76
BXD29-Tlr4lps-2J/J m 256812.0 0.0   1   0.0 0.0 256812.0, 256812.0 -0.6
BXD2/TyJ m 383768.0 0.0   1   0.0 0.0 383768.0, 383768.0 -0.18
BXD32/TyJ m 148565.0 0.0   1   0.0 0.0 148565.0, 148565.0 -0.95
BXD33/TyJ m 503502.0 0.0   1   0.0 0.0 503502.0, 503502.0 0.21
BXD34/TyJ m 194415.0 0.0   1   0.0 0.0 194415.0, 194415.0 -0.8
BXD36/TyJ m 172937.0 0.0   1   0.0 0.0 172937.0, 172937.0 -0.87
BXD38/TyJ m 191292.0 0.0   1   0.0 0.0 191292.0, 191292.0 -0.81
BXD39/TyJ m 407466.0 0.0   1   0.0 0.0 407466.0, 407466.0 -0.1
BXD40/TyJ m 334333.0 0.0   1   0.0 0.0 334333.0, 334333.0 -0.34
BXD42/TyJ m 333999.0 0.0   1   0.0 0.0 333999.0, 333999.0 -0.34
BXD5/TyJ m 376966.0 0.0   1   0.0 0.0 376966.0, 376966.0 -0.2
BXD6/TyJ m 578739.0 0.0   1   0.0 0.0 578739.0, 578739.0 0.46
BXD8/TyJ m 206781.0 0.0   1   0.0 0.0 206781.0, 206781.0 -0.76
BXD9/TyJ m 436689.0 0.0   1   0.0 0.0 436689.0, 436689.0 0.0
BXH10/TyJ m 300793.0 0.0   1   0.0 0.0 300793.0, 300793.0 -0.45
BXH19/TyJ m 1729362.0 0.0   1   0.0 0.0 1729362.0, 1729362.0 4.24
BXH20/KccJ m 773960.0 0.0   1   0.0 0.0 773960.0, 773960.0 1.1
BXH22/KccJ m 288619.0 0.0   1   0.0 0.0 288619.0, 288619.0 -0.49
BXH2/TyJ m 467641.0 0.0   1   0.0 0.0 467641.0, 467641.0 0.1
BXH4/TyJ m 367807.0 203882.0   2   144166.0 0.554 223641.0, 511974.0 -0.23
BXH6/TyJ m 455858.0 0.0   1   0.0 0.0 455858.0, 455858.0 0.06
BXH7/TyJ m 751210.0 0.0   1   0.0 0.0 751210.0, 751210.0 1.03
BXH8/TyJ m 607225.0 0.0   1   0.0 0.0 607225.0, 607225.0 0.56
BXH9/TyJ m 314684.0 0.0   1   0.0 0.0 314684.0, 314684.0 -0.41
C3H/HeJ m 453442.0 296181.0   2   209432.0 0.653 244010.0, 662873.0 0.05
C57BL/6J m 245161.0 116472.0   4 58236.0 0.475 97768.0, 356442.0 -0.63
C57L/J m 176803.0 0.0   1   0.0 0.0 176803.0, 176803.0 -0.86
C58/J m 754600.0 0.0   1   0.0 0.0 754600.0, 754600.0 1.04
CAST/EiJ m 945289.0 0.0   1   0.0 0.0 945289.0, 945289.0 1.67
CBA/J m 248588.0 0.0   1   0.0 0.0 248588.0, 248588.0 -0.62
CE/J m 383377.0 0.0   1   0.0 0.0 383377.0, 383377.0 -0.18
CXB11/HiAJ m 167962.0 195004.0   2   137889.0 1.16 30073.0, 305850.0 -0.89
CXB12/HiAJ m 211187.0 131472.0   2   92965.0 0.623 118222.0, 304152.0 -0.75
CXB13/HiAJ m 308074.0 127876.0   3 73829.0 0.415 210673.0, 452884.0 -0.43
CXB1/ByJ m 801732.0 535951.0   3 309432.0 0.668 365237.0, 1399910.0 1.19
CXB2/ByJ m 267225.0 47907.0   2   33876.0 0.179 233349.0, 301100.0 -0.56
CXB3/ByJ m 507035.0 190228.0   2   134512.0 0.375 372524.0, 641547.0 0.23
CXB4/ByJ m 230452.0 49480.0   2   34988.0 0.215 195464.0, 265440.0 -0.68
CXB6/ByJ m 185026.0 189622.0   2   134083.0 1.02 50943.0, 319110.0 -0.83
CXB7/ByJ m 306719.0 111478.0   2   78827.0 0.363 227893.0, 385546.0 -0.43
CXB8/HiAJ m 605940.0 333883.0   3 192767.0 0.551 223160.0, 837167.0 0.55
CXB9/HiAJ m 220683.0 173846.0   2   122928.0 0.788 97755.0, 343610.0 -0.71
DBA/2J m 484515.0 337269.0   4 168634.0 0.696 221382.0, 977199.0 0.15
FVB/NJ m 357989.0 0.0   1   0.0 0.0 357989.0, 357989.0 -0.26
I/LnJ m 388595.0 0.0   1   0.0 0.0 388595.0, 388595.0 -0.16
KK/HlJ m 513659.0 0.0   1   0.0 0.0 513659.0, 513659.0 0.25
LG/J m 670508.0 0.0   1   0.0 0.0 670508.0, 670508.0 0.76
LP/J m 434711.0 0.0   1   0.0 0.0 434711.0, 434711.0 -0.01
MA/MyJ m 285239.0 0.0   1   0.0 0.0 285239.0, 285239.0 -0.5
NOD/ShiLtJ m 466703.0 0.0   1   0.0 0.0 466703.0, 466703.0 0.09
NON/ShiLtJ m 1548464.0 0.0   1   0.0 0.0 1548464.0, 1548464.0 3.65
NZW/LacJ m 133767.0 0.0   1   0.0 0.0 133767.0, 133767.0 -1.0
PL/J m 494859.0 0.0   1   0.0 0.0 494859.0, 494859.0 0.19
RIIIS/J m 191492.0 0.0   1   0.0 0.0 191492.0, 191492.0 -0.81
SEA/GnJ m 323396.0 0.0   1   0.0 0.0 323396.0, 323396.0 -0.38
SJL/J m 815545.0 0.0   1   0.0 0.0 815545.0, 815545.0 1.24
SM/J m 644943.0 0.0   1   0.0 0.0 644943.0, 644943.0 0.68
SWR/J m 315889.0 0.0   1   0.0 0.0 315889.0, 315889.0 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 202577.55 168920.9249 547560.1021 0.0
AXB19b/PgnJ m 951651.8 168920.9249 1296634.3521 606669.2479
AXB24/PgnJ m 346740.2 168920.9249 691722.7521 1757.6479
BALB/cJ m 298257.6333 137923.3576 579934.7076 16580.559
BXA16/PgnJ m 264274.2 168920.9249 609256.7521 0.0
BXD19/TyJ m 306634.3 168920.9249 651616.8521 0.0
BXD28/TyJ m 205725.65 168920.9249 550708.2021 0.0
BXH4/TyJ m 367807.35 168920.9249 712789.9021 22824.7979
C3H/HeJ m 453441.65 168920.9249 798424.2021 108459.0979
C57BL/6J m 245160.75 119445.1315 489100.252 1221.248
CXB11/HiAJ m 167961.7 168920.9249 512944.2521 0.0
CXB12/HiAJ m 211186.6 168920.9249 556169.1521 0.0
CXB13/HiAJ m 308074.1333 137923.3576 589751.2076 26397.059
CXB1/ByJ m 801731.7333 137923.3576 1083408.8076 520054.659
CXB2/ByJ m 267224.7 168920.9249 612207.2521 0.0
CXB3/ByJ m 507035.2 168920.9249 852017.7521 162052.6479
CXB4/ByJ m 230451.95 168920.9249 575434.5021 0.0
CXB6/ByJ m 185026.4 168920.9249 530008.9521 0.0
CXB7/ByJ m 306719.4 168920.9249 651701.9521 0.0
CXB8/HiAJ m 605940.3 137923.3576 887617.3743 324263.2257
CXB9/HiAJ m 220682.9 168920.9249 565665.4521 0.0
DBA/2J m 484514.7 119445.1315 728454.202 240575.198




  GWAS USING LINEAR MIXED MODELS