Phenotype measure:   HMDPpheno9   PGPC_1

ID, description, units MPD:50416   PGPC_1   liver 1-palmitoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-palmitoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means10450377   None
Median of the strain means9729333   None
SD of the strain means± 5099443
Coefficient of variation (CV)0.488
Min–max range of strain means3261490   –   35240104   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 761550838290383.0 36264325632875.4 1.8047 0.0611
Residuals 34 683206700829787.0 20094314730287.8


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 23521834.0 0.0   1   0.0 0.0 23521834.0, 23521834.0 2.56
A/J m 6508371.0 5229623.0   2   3697902.0 0.804 2810470.0, 10206273.0 -0.77
AKR/J m 6774430.0 0.0   1   0.0 0.0 6774430.0, 6774430.0 -0.72
AXB10/PgnJ m 9211357.0 0.0   1   0.0 0.0 9211357.0, 9211357.0 -0.24
AXB12/PgnJ m 5923013.0 0.0   1   0.0 0.0 5923013.0, 5923013.0 -0.89
AXB13/PgnJ m 4878344.0 0.0   1   0.0 0.0 4878344.0, 4878344.0 -1.09
AXB15/PgnJ m 4677208.0 0.0   1   0.0 0.0 4677208.0, 4677208.0 -1.13
AXB19a/PgnJ m 11126695.0 0.0   1   0.0 0.0 11126695.0, 11126695.0 0.13
AXB19b/PgnJ m 16516990.0 2927612.0   2   2070134.0 0.177 14446855.0, 18587124.0 1.19
AXB19/PgnJ m 13433929.0 0.0   1   0.0 0.0 13433929.0, 13433929.0 0.59
AXB1/PgnJ m 29663428.0 0.0   1   0.0 0.0 29663428.0, 29663428.0 3.77
AXB23/PgnJ m 13437493.0 0.0   1   0.0 0.0 13437493.0, 13437493.0 0.59
AXB24/PgnJ m 7440572.0 6862363.0   2   4852423.0 0.922 2588148.0, 12292995.0 -0.59
AXB2/PgnJ m 8103573.0 0.0   1   0.0 0.0 8103573.0, 8103573.0 -0.46
AXB4/PgnJ m 11202229.0 0.0   1   0.0 0.0 11202229.0, 11202229.0 0.15
AXB5/PgnJ m 6122696.0 0.0   1   0.0 0.0 6122696.0, 6122696.0 -0.85
AXB6/PgnJ m 8005434.0 0.0   1   0.0 0.0 8005434.0, 8005434.0 -0.48
AXB8/PgnJ m 6285485.0 0.0   1   0.0 0.0 6285485.0, 6285485.0 -0.82
BALB/cJ m 8776750.0 2856239.0   3 1649050.0 0.325 5503762.0, 10765039.0 -0.33
BTBR T+ Itpr3tf/J m 15080952.0 0.0   1   0.0 0.0 15080952.0, 15080952.0 0.91
BUB/BnJ m 13355162.0 0.0   1   0.0 0.0 13355162.0, 13355162.0 0.57
BXA11/PgnJ m 7813072.0 0.0   1   0.0 0.0 7813072.0, 7813072.0 -0.52
BXA12/PgnJ m 5239434.0 0.0   1   0.0 0.0 5239434.0, 5239434.0 -1.02
BXA13/PgnJ m 13558617.0 0.0   1   0.0 0.0 13558617.0, 13558617.0 0.61
BXA14/PgnJ m 16684581.0 0.0   1   0.0 0.0 16684581.0, 16684581.0 1.22
BXA16/PgnJ m 7675230.0 1255556.0   2   887812.0 0.164 6787417.0, 8563042.0 -0.54
BXA1/PgnJ m 9716674.0 0.0   1   0.0 0.0 9716674.0, 9716674.0 -0.14
BXA24/PgnJ m 10424979.0 0.0   1   0.0 0.0 10424979.0, 10424979.0 0.0
BXA25/PgnJ m 7093710.0 0.0   1   0.0 0.0 7093710.0, 7093710.0 -0.66
BXA26/PgnJ m 13547366.0 0.0   1   0.0 0.0 13547366.0, 13547366.0 0.61
BXA2/PgnJ m 8441409.0 0.0   1   0.0 0.0 8441409.0, 8441409.0 -0.39
BXA4/PgnJ m 11597972.0 0.0   1   0.0 0.0 11597972.0, 11597972.0 0.23
BXA7/PgnJ m 9081921.0 0.0   1   0.0 0.0 9081921.0, 9081921.0 -0.27
BXA8/PgnJ m 9493447.0 0.0   1   0.0 0.0 9493447.0, 9493447.0 -0.19
BXD11/TyJ m 6063649.0 0.0   1   0.0 0.0 6063649.0, 6063649.0 -0.86
BXD12/TyJ m 18412524.0 0.0   1   0.0 0.0 18412524.0, 18412524.0 1.56
BXD13/TyJ m 8257796.0 0.0   1   0.0 0.0 8257796.0, 8257796.0 -0.43
BXD14/TyJ m 19831252.0 0.0   1   0.0 0.0 19831252.0, 19831252.0 1.84
BXD15/TyJ m 16001770.0 0.0   1   0.0 0.0 16001770.0, 16001770.0 1.09
BXD18/TyJ m 6977520.0 0.0   1   0.0 0.0 6977520.0, 6977520.0 -0.68
BXD19/TyJ m 9582944.0 469684.0   2   332116.0 0.049 9250827.0, 9915060.0 -0.17
BXD1/TyJ m 10212638.0 0.0   1   0.0 0.0 10212638.0, 10212638.0 -0.05
BXD20/TyJ m 11496452.0 0.0   1   0.0 0.0 11496452.0, 11496452.0 0.21
BXD21/TyJ m 4948714.0 0.0   1   0.0 0.0 4948714.0, 4948714.0 -1.08
BXD22/TyJ m 10082638.0 0.0   1   0.0 0.0 10082638.0, 10082638.0 -0.07
BXD24/TyJ m 7353746.0 0.0   1   0.0 0.0 7353746.0, 7353746.0 -0.61
BXD24/TyJ-Cep290rd16/J m 7737966.0 0.0   1   0.0 0.0 7737966.0, 7737966.0 -0.53
BXD28/TyJ m 7185582.0 577148.0   2   408106.0 0.0803 6777477.0, 7593688.0 -0.64
BXD29-Tlr4lps-2J/J m 7086932.0 0.0   1   0.0 0.0 7086932.0, 7086932.0 -0.66
BXD2/TyJ m 9792885.0 0.0   1   0.0 0.0 9792885.0, 9792885.0 -0.13
BXD32/TyJ m 5216658.0 0.0   1   0.0 0.0 5216658.0, 5216658.0 -1.03
BXD33/TyJ m 15118245.0 0.0   1   0.0 0.0 15118245.0, 15118245.0 0.92
BXD34/TyJ m 4994039.0 0.0   1   0.0 0.0 4994039.0, 4994039.0 -1.07
BXD36/TyJ m 4933860.0 0.0   1   0.0 0.0 4933860.0, 4933860.0 -1.08
BXD38/TyJ m 6431369.0 0.0   1   0.0 0.0 6431369.0, 6431369.0 -0.79
BXD39/TyJ m 11491530.0 0.0   1   0.0 0.0 11491530.0, 11491530.0 0.2
BXD40/TyJ m 9741992.0 0.0   1   0.0 0.0 9741992.0, 9741992.0 -0.14
BXD42/TyJ m 9516782.0 0.0   1   0.0 0.0 9516782.0, 9516782.0 -0.18
BXD5/TyJ m 11435573.0 0.0   1   0.0 0.0 11435573.0, 11435573.0 0.19
BXD6/TyJ m 12572843.0 0.0   1   0.0 0.0 12572843.0, 12572843.0 0.42
BXD8/TyJ m 5147232.0 0.0   1   0.0 0.0 5147232.0, 5147232.0 -1.04
BXD9/TyJ m 14266989.0 0.0   1   0.0 0.0 14266989.0, 14266989.0 0.75
BXH10/TyJ m 9184401.0 0.0   1   0.0 0.0 9184401.0, 9184401.0 -0.25
BXH19/TyJ m 35240104.0 0.0   1   0.0 0.0 35240104.0, 35240104.0 4.86
BXH20/KccJ m 13330268.0 0.0   1   0.0 0.0 13330268.0, 13330268.0 0.56
BXH22/KccJ m 9904703.0 0.0   1   0.0 0.0 9904703.0, 9904703.0 -0.11
BXH2/TyJ m 12665157.0 0.0   1   0.0 0.0 12665157.0, 12665157.0 0.43
BXH4/TyJ m 10452970.0 1835352.0   2   1297790.0 0.176 9155180.0, 11750760.0 0.0
BXH6/TyJ m 11024105.0 0.0   1   0.0 0.0 11024105.0, 11024105.0 0.11
BXH7/TyJ m 17488998.0 0.0   1   0.0 0.0 17488998.0, 17488998.0 1.38
BXH8/TyJ m 12040166.0 0.0   1   0.0 0.0 12040166.0, 12040166.0 0.31
BXH9/TyJ m 10503429.0 0.0   1   0.0 0.0 10503429.0, 10503429.0 0.01
C3H/HeJ m 10292546.0 2964796.0   2   2096428.0 0.288 8196119.0, 12388974.0 -0.03
C57BL/6J m 5114550.0 3088878.0   5 1381388.0 0.604 821203.0, 9327038.0 -1.05
C57L/J m 4134895.0 0.0   1   0.0 0.0 4134895.0, 4134895.0 -1.24
C58/J m 12945623.0 0.0   1   0.0 0.0 12945623.0, 12945623.0 0.49
CAST/EiJ m 13405156.0 0.0   1   0.0 0.0 13405156.0, 13405156.0 0.58
CBA/J m 8956077.0 0.0   1   0.0 0.0 8956077.0, 8956077.0 -0.29
CE/J m 10698257.0 0.0   1   0.0 0.0 10698257.0, 10698257.0 0.05
CXB11/HiAJ m 6280365.0 5990121.0   2   4235655.0 0.954 2044709.0, 10516020.0 -0.82
CXB12/HiAJ m 5355192.0 4936941.0   2   3490944.0 0.922 1864247.0, 8846136.0 -1.0
CXB13/HiAJ m 8245663.0 3406127.0   3 1966528.0 0.413 4630920.0, 11395393.0 -0.43
CXB1/ByJ m 15439986.0 3397082.0   3 1961306.0 0.22 13076005.0, 19332854.0 0.98
CXB2/ByJ m 5096785.0 4432433.0   3 2559067.0 0.87 87116.0, 8509299.0 -1.05
CXB3/ByJ m 11519310.0 2205612.0   2   1559603.0 0.191 9959707.0, 13078913.0 0.21
CXB4/ByJ m 8193932.0 1527728.0   2   1080267.0 0.186 7113666.0, 9274199.0 -0.44
CXB6/ByJ m 3261490.0 4603084.0   3 2657592.0 1.41 217027.0, 8556892.0 -1.41
CXB7/ByJ m 8957288.0 2494540.0   2   1763906.0 0.278 7193382.0, 10721195.0 -0.29
CXB8/HiAJ m 14119275.0 8255188.0   3 4766135.0 0.585 5199834.0, 21491178.0 0.72
CXB9/HiAJ m 3414559.0 3404087.0   3 1965350.0 0.997 413544.0, 7113529.0 -1.38
DBA/2J m 12445031.0 7534889.0   4 3767444.0 0.605 6231262.0, 23392172.0 0.39
FVB/NJ m 9544342.0 0.0   1   0.0 0.0 9544342.0, 9544342.0 -0.18
I/LnJ m 10968733.0 0.0   1   0.0 0.0 10968733.0, 10968733.0 0.1
KK/HlJ m 11004174.0 0.0   1   0.0 0.0 11004174.0, 11004174.0 0.11
LG/J m 15964752.0 0.0   1   0.0 0.0 15964752.0, 15964752.0 1.08
LP/J m 10582969.0 0.0   1   0.0 0.0 10582969.0, 10582969.0 0.03
MA/MyJ m 6391679.0 0.0   1   0.0 0.0 6391679.0, 6391679.0 -0.8
NOD/ShiLtJ m 9888531.0 0.0   1   0.0 0.0 9888531.0, 9888531.0 -0.11
NON/ShiLtJ m 25379828.0 0.0   1   0.0 0.0 25379828.0, 25379828.0 2.93
NZW/LacJ m 5712769.0 0.0   1   0.0 0.0 5712769.0, 5712769.0 -0.93
PL/J m 12090630.0 0.0   1   0.0 0.0 12090630.0, 12090630.0 0.32
RIIIS/J m 4984052.0 0.0   1   0.0 0.0 4984052.0, 4984052.0 -1.07
SEA/GnJ m 9526929.0 0.0   1   0.0 0.0 9526929.0, 9526929.0 -0.18
SJL/J m 14676059.0 0.0   1   0.0 0.0 14676059.0, 14676059.0 0.83
SM/J m 9995777.0 0.0   1   0.0 0.0 9995777.0, 9995777.0 -0.09
SWR/J m 9011944.0 0.0   1   0.0 0.0 9011944.0, 9011944.0 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 6508371.4 3169725.1245 12950027.8804 66714.9196
AXB19b/PgnJ m 16516989.5 3169725.1245 22958645.9804 10075333.0196
AXB24/PgnJ m 7440571.75 3169725.1245 13882228.2304 998915.2696
BALB/cJ m 8776750.5 2588069.7267 14036340.9918 3517160.0082
BXA16/PgnJ m 7675229.5 3169725.1245 14116885.9804 1233573.0196
BXD19/TyJ m 9582943.5 3169725.1245 16024599.9804 3141287.0196
BXD28/TyJ m 7185582.5 3169725.1245 13627238.9804 743926.0196
BXH4/TyJ m 10452970.0 3169725.1245 16894626.4804 4011313.5196
C3H/HeJ m 10292546.5 3169725.1245 16734202.9804 3850890.0196
C57BL/6J m 5114550.24 2004710.19 9188611.5165 1040488.9635
CXB11/HiAJ m 6280364.55 3169725.1245 12722021.0304 0.0
CXB12/HiAJ m 5355191.65 3169725.1245 11796848.1304 0.0
CXB13/HiAJ m 8245663.3333 2588069.7267 13505253.8251 2986072.8416
CXB1/ByJ m 15439985.6667 2588069.7267 20699576.1584 10180395.1749
CXB2/ByJ m 5096784.6667 2588069.7267 10356375.1584 0.0
CXB3/ByJ m 11519310.0 3169725.1245 17960966.4804 5077653.5196
CXB4/ByJ m 8193932.25 3169725.1245 14635588.7304 1752275.7696
CXB6/ByJ m 3261490.4 2588069.7267 8521080.8918 0.0
CXB7/ByJ m 8957288.5 3169725.1245 15398944.9804 2515632.0196
CXB8/HiAJ m 14119274.6667 2588069.7267 19378865.1584 8859684.1749
CXB9/HiAJ m 3414559.3333 2588069.7267 8674149.8251 0.0
DBA/2J m 12445031.25 2241334.1301 16999970.2294 7890092.2706




  GWAS USING LINEAR MIXED MODELS