Phenotype measure:   HMDPpheno9   PDGPC

ID, description, units MPD:50415   PDGPC   liver 1-pentadecanoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-pentadecanoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means102681   None
Median of the strain means92023   None
SD of the strain means± 52918
Coefficient of variation (CV)0.515
Min–max range of strain means21806   –   317158   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 12 50562406179.6809 4213533848.3067 3.755 0.0066
Residuals 17 19075813957.0209 1122106703.3542


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 150013.0 0.0   1   0.0 0.0 150013.0, 150013.0 0.89
A/J m 67319.0 0.0   1   0.0 0.0 67319.0, 67319.0 -0.67
AKR/J m 125398.0 0.0   1   0.0 0.0 125398.0, 125398.0 0.43
AXB12/PgnJ m 142167.0 0.0   1   0.0 0.0 142167.0, 142167.0 0.75
AXB15/PgnJ m 40570.0 0.0   1   0.0 0.0 40570.0, 40570.0 -1.17
AXB19a/PgnJ m 130059.0 0.0   1   0.0 0.0 130059.0, 130059.0 0.52
AXB19b/PgnJ m 173426.0 46697.0   2   33020.0 0.269 140407.0, 206446.0 1.34
AXB19/PgnJ m 157570.0 0.0   1   0.0 0.0 157570.0, 157570.0 1.04
AXB1/PgnJ m 317158.0 0.0   1   0.0 0.0 317158.0, 317158.0 4.05
AXB23/PgnJ m 93021.0 0.0   1   0.0 0.0 93021.0, 93021.0 -0.18
AXB24/PgnJ m 128830.0 0.0   1   0.0 0.0 128830.0, 128830.0 0.49
AXB2/PgnJ m 126027.0 0.0   1   0.0 0.0 126027.0, 126027.0 0.44
AXB4/PgnJ m 42731.0 0.0   1   0.0 0.0 42731.0, 42731.0 -1.13
AXB6/PgnJ m 68208.0 0.0   1   0.0 0.0 68208.0, 68208.0 -0.65
AXB8/PgnJ m 44635.0 0.0   1   0.0 0.0 44635.0, 44635.0 -1.1
BALB/cJ m 84485.0 8407.0   2   5945.0 0.0995 78540.0, 90430.0 -0.34
BTBR T+ Itpr3tf/J m 82334.0 0.0   1   0.0 0.0 82334.0, 82334.0 -0.38
BUB/BnJ m 143238.0 0.0   1   0.0 0.0 143238.0, 143238.0 0.77
BXA12/PgnJ m 68205.0 0.0   1   0.0 0.0 68205.0, 68205.0 -0.65
BXA13/PgnJ m 171344.0 0.0   1   0.0 0.0 171344.0, 171344.0 1.3
BXA14/PgnJ m 306962.0 0.0   1   0.0 0.0 306962.0, 306962.0 3.86
BXA16/PgnJ m 70288.0 4260.0   2   3012.0 0.0606 67276.0, 73300.0 -0.61
BXA24/PgnJ m 74404.0 0.0   1   0.0 0.0 74404.0, 74404.0 -0.53
BXA25/PgnJ m 109950.0 0.0   1   0.0 0.0 109950.0, 109950.0 0.14
BXA26/PgnJ m 131471.0 0.0   1   0.0 0.0 131471.0, 131471.0 0.54
BXA2/PgnJ m 86276.0 0.0   1   0.0 0.0 86276.0, 86276.0 -0.31
BXA4/PgnJ m 98326.0 0.0   1   0.0 0.0 98326.0, 98326.0 -0.08
BXA7/PgnJ m 81056.0 0.0   1   0.0 0.0 81056.0, 81056.0 -0.41
BXA8/PgnJ m 65722.0 0.0   1   0.0 0.0 65722.0, 65722.0 -0.7
BXD12/TyJ m 120763.0 0.0   1   0.0 0.0 120763.0, 120763.0 0.34
BXD14/TyJ m 49336.0 0.0   1   0.0 0.0 49336.0, 49336.0 -1.01
BXD15/TyJ m 74831.0 0.0   1   0.0 0.0 74831.0, 74831.0 -0.53
BXD18/TyJ m 72044.0 0.0   1   0.0 0.0 72044.0, 72044.0 -0.58
BXD19/TyJ m 96580.0 6446.0   2   4558.0 0.0667 92023.0, 101138.0 -0.12
BXD20/TyJ m 113267.0 0.0   1   0.0 0.0 113267.0, 113267.0 0.2
BXD21/TyJ m 21806.0 0.0   1   0.0 0.0 21806.0, 21806.0 -1.53
BXD22/TyJ m 110960.0 0.0   1   0.0 0.0 110960.0, 110960.0 0.16
BXD24/TyJ m 71840.0 0.0   1   0.0 0.0 71840.0, 71840.0 -0.58
BXD28/TyJ m 60674.0 6252.0   2   4421.0 0.103 56253.0, 65094.0 -0.79
BXD29-Tlr4lps-2J/J m 57315.0 0.0   1   0.0 0.0 57315.0, 57315.0 -0.86
BXD2/TyJ m 64773.0 0.0   1   0.0 0.0 64773.0, 64773.0 -0.72
BXD32/TyJ m 81547.0 0.0   1   0.0 0.0 81547.0, 81547.0 -0.4
BXD33/TyJ m 107389.0 0.0   1   0.0 0.0 107389.0, 107389.0 0.09
BXD34/TyJ m 70052.0 0.0   1   0.0 0.0 70052.0, 70052.0 -0.62
BXD38/TyJ m 63463.0 0.0   1   0.0 0.0 63463.0, 63463.0 -0.74
BXD39/TyJ m 44472.0 0.0   1   0.0 0.0 44472.0, 44472.0 -1.1
BXD40/TyJ m 92023.0 0.0   1   0.0 0.0 92023.0, 92023.0 -0.2
BXD42/TyJ m 107807.0 0.0   1   0.0 0.0 107807.0, 107807.0 0.1
BXD5/TyJ m 115712.0 0.0   1   0.0 0.0 115712.0, 115712.0 0.25
BXD6/TyJ m 59789.0 0.0   1   0.0 0.0 59789.0, 59789.0 -0.81
BXD9/TyJ m 67594.0 0.0   1   0.0 0.0 67594.0, 67594.0 -0.66
BXH10/TyJ m 89502.0 0.0   1   0.0 0.0 89502.0, 89502.0 -0.25
BXH19/TyJ m 213266.0 0.0   1   0.0 0.0 213266.0, 213266.0 2.09
BXH20/KccJ m 124690.0 0.0   1   0.0 0.0 124690.0, 124690.0 0.42
BXH22/KccJ m 71972.0 0.0   1   0.0 0.0 71972.0, 71972.0 -0.58
BXH2/TyJ m 105367.0 0.0   1   0.0 0.0 105367.0, 105367.0 0.05
BXH4/TyJ m 85807.0 31290.0   2   22126.0 0.365 63682.0, 107933.0 -0.32
BXH6/TyJ m 148393.0 0.0   1   0.0 0.0 148393.0, 148393.0 0.86
BXH7/TyJ m 159510.0 0.0   1   0.0 0.0 159510.0, 159510.0 1.07
BXH8/TyJ m 101216.0 0.0   1   0.0 0.0 101216.0, 101216.0 -0.03
BXH9/TyJ m 59098.0 0.0   1   0.0 0.0 59098.0, 59098.0 -0.82
C3H/HeJ m 100852.0 0.0   1   0.0 0.0 100852.0, 100852.0 -0.03
C57BL/6J m 65967.0 36848.0   2   26055.0 0.559 39912.0, 92023.0 -0.69
C57L/J m 58434.0 0.0   1   0.0 0.0 58434.0, 58434.0 -0.84
C58/J m 177468.0 0.0   1   0.0 0.0 177468.0, 177468.0 1.41
CAST/EiJ m 198123.0 0.0   1   0.0 0.0 198123.0, 198123.0 1.8
CBA/J m 89815.0 0.0   1   0.0 0.0 89815.0, 89815.0 -0.24
CE/J m 97904.0 0.0   1   0.0 0.0 97904.0, 97904.0 -0.09
CXB11/HiAJ m 88582.0 0.0   1   0.0 0.0 88582.0, 88582.0 -0.27
CXB12/HiAJ m 91816.0 0.0   1   0.0 0.0 91816.0, 91816.0 -0.21
CXB13/HiAJ m 65335.0 38454.0   3 22202.0 0.589 35686.0, 108785.0 -0.71
CXB1/ByJ m 188081.0 57563.0   3 33234.0 0.306 143878.0, 253172.0 1.61
CXB2/ByJ m 61676.0 5339.0   2   3775.0 0.0866 57901.0, 65451.0 -0.77
CXB3/ByJ m 96914.0 0.0   1   0.0 0.0 96914.0, 96914.0 -0.11
CXB4/ByJ m 40047.0 0.0   1   0.0 0.0 40047.0, 40047.0 -1.18
CXB6/ByJ m 78799.0 0.0   1   0.0 0.0 78799.0, 78799.0 -0.45
CXB7/ByJ m 70611.0 35596.0   2   25170.0 0.504 45441.0, 95781.0 -0.61
CXB8/HiAJ m 113330.0 11477.0   2   8116.0 0.101 105214.0, 121445.0 0.2
CXB9/HiAJ m 35406.0 0.0   1   0.0 0.0 35406.0, 35406.0 -1.27
DBA/2J m 98597.0 33552.0   4 16776.0 0.34 61199.0, 142015.0 -0.08
FVB/NJ m 103132.0 0.0   1   0.0 0.0 103132.0, 103132.0 0.01
I/LnJ m 92230.0 0.0   1   0.0 0.0 92230.0, 92230.0 -0.2
KK/HlJ m 79982.0 0.0   1   0.0 0.0 79982.0, 79982.0 -0.43
LG/J m 121642.0 0.0   1   0.0 0.0 121642.0, 121642.0 0.36
LP/J m 107796.0 0.0   1   0.0 0.0 107796.0, 107796.0 0.1
MA/MyJ m 57640.0 0.0   1   0.0 0.0 57640.0, 57640.0 -0.85
NOD/ShiLtJ m 92023.0 0.0   1   0.0 0.0 92023.0, 92023.0 -0.2
NON/ShiLtJ m 261901.0 0.0   1   0.0 0.0 261901.0, 261901.0 3.01
PL/J m 107411.0 0.0   1   0.0 0.0 107411.0, 107411.0 0.09
SEA/GnJ m 69211.0 0.0   1   0.0 0.0 69211.0, 69211.0 -0.63
SJL/J m 199822.0 0.0   1   0.0 0.0 199822.0, 199822.0 1.84
SM/J m 113835.0 0.0   1   0.0 0.0 113835.0, 113835.0 0.21
SWR/J m 60919.0 0.0   1   0.0 0.0 60919.0, 60919.0 -0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB19b/PgnJ m 173426.5 23686.5648 223400.7834 123452.2166
BALB/cJ m 84484.7 23686.5648 134458.9834 34510.4166
BXA16/PgnJ m 70287.9 23686.5648 120262.1834 20313.6166
BXD19/TyJ m 96580.5 23686.5648 146554.7834 46606.2166
BXD28/TyJ m 60673.7 23686.5648 110647.9834 10699.4166
BXH4/TyJ m 85807.35 23686.5648 135781.6334 35833.0666
C57BL/6J m 65967.35 23686.5648 115941.6334 15993.0666
CXB13/HiAJ m 65334.5667 19339.9992 106138.3982 24530.7351
CXB1/ByJ m 188081.4333 19339.9992 228885.2649 147277.6018
CXB2/ByJ m 61675.95 23686.5648 111650.2334 11701.6666
CXB7/ByJ m 70610.85 23686.5648 120585.1334 20636.5666
CXB8/HiAJ m 113329.6 23686.5648 163303.8834 63355.3166
DBA/2J m 98597.175 16748.9306 133934.3297 63260.0203




  GWAS USING LINEAR MIXED MODELS