Phenotype measure:   HMDPpheno9   OGPC_2

ID, description, units MPD:50414   OGPC_2   liver 2-oleoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-oleoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1103017   None
Median of the strain means826374   None
SD of the strain means± 876297
Coefficient of variation (CV)0.794
Min–max range of strain means203800   –   5558002   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 18950560348466.8 902407635641.274 2.0576 0.0332
Residuals 31 13596086341526.4 438583430371.818


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2131060.0 0.0   1   0.0 0.0 2131060.0, 2131060.0 1.17
A/J m 496198.0 452844.0   2   320209.0 0.913 175990.0, 816407.0 -0.69
AKR/J m 518716.0 0.0   1   0.0 0.0 518716.0, 518716.0 -0.67
AXB10/PgnJ m 666490.0 0.0   1   0.0 0.0 666490.0, 666490.0 -0.5
AXB12/PgnJ m 426360.0 0.0   1   0.0 0.0 426360.0, 426360.0 -0.77
AXB13/PgnJ m 380213.0 0.0   1   0.0 0.0 380213.0, 380213.0 -0.82
AXB15/PgnJ m 252426.0 0.0   1   0.0 0.0 252426.0, 252426.0 -0.97
AXB19a/PgnJ m 1287671.0 0.0   1   0.0 0.0 1287671.0, 1287671.0 0.21
AXB19b/PgnJ m 3089478.0 1329024.0   2   939762.0 0.43 2149716.0, 4029240.0 2.27
AXB19/PgnJ m 1953082.0 0.0   1   0.0 0.0 1953082.0, 1953082.0 0.97
AXB1/PgnJ m 4167384.0 0.0   1   0.0 0.0 4167384.0, 4167384.0 3.5
AXB23/PgnJ m 974926.0 0.0   1   0.0 0.0 974926.0, 974926.0 -0.15
AXB24/PgnJ m 765029.0 803910.0   2   568451.0 1.05 196578.0, 1333480.0 -0.39
AXB2/PgnJ m 715110.0 0.0   1   0.0 0.0 715110.0, 715110.0 -0.44
AXB4/PgnJ m 1335991.0 0.0   1   0.0 0.0 1335991.0, 1335991.0 0.27
AXB5/PgnJ m 503481.0 0.0   1   0.0 0.0 503481.0, 503481.0 -0.68
AXB6/PgnJ m 863404.0 0.0   1   0.0 0.0 863404.0, 863404.0 -0.27
AXB8/PgnJ m 536730.0 0.0   1   0.0 0.0 536730.0, 536730.0 -0.65
BALB/cJ m 670580.0 187813.0   3 108434.0 0.28 460664.0, 822710.0 -0.49
BTBR T+ Itpr3tf/J m 1136197.0 0.0   1   0.0 0.0 1136197.0, 1136197.0 0.04
BUB/BnJ m 1156257.0 0.0   1   0.0 0.0 1156257.0, 1156257.0 0.06
BXA11/PgnJ m 448596.0 0.0   1   0.0 0.0 448596.0, 448596.0 -0.75
BXA12/PgnJ m 431095.0 0.0   1   0.0 0.0 431095.0, 431095.0 -0.77
BXA13/PgnJ m 2449849.0 0.0   1   0.0 0.0 2449849.0, 2449849.0 1.54
BXA14/PgnJ m 3524786.0 0.0   1   0.0 0.0 3524786.0, 3524786.0 2.76
BXA16/PgnJ m 644388.0 112658.0   2   79661.0 0.175 564727.0, 724049.0 -0.52
BXA1/PgnJ m 797786.0 0.0   1   0.0 0.0 797786.0, 797786.0 -0.35
BXA24/PgnJ m 1308498.0 0.0   1   0.0 0.0 1308498.0, 1308498.0 0.23
BXA25/PgnJ m 537768.0 0.0   1   0.0 0.0 537768.0, 537768.0 -0.65
BXA26/PgnJ m 1593890.0 0.0   1   0.0 0.0 1593890.0, 1593890.0 0.56
BXA2/PgnJ m 833930.0 0.0   1   0.0 0.0 833930.0, 833930.0 -0.31
BXA4/PgnJ m 972407.0 0.0   1   0.0 0.0 972407.0, 972407.0 -0.15
BXA7/PgnJ m 940316.0 0.0   1   0.0 0.0 940316.0, 940316.0 -0.19
BXA8/PgnJ m 616130.0 0.0   1   0.0 0.0 616130.0, 616130.0 -0.56
BXD11/TyJ m 496358.0 0.0   1   0.0 0.0 496358.0, 496358.0 -0.69
BXD12/TyJ m 2928034.0 0.0   1   0.0 0.0 2928034.0, 2928034.0 2.08
BXD13/TyJ m 489341.0 0.0   1   0.0 0.0 489341.0, 489341.0 -0.7
BXD14/TyJ m 2473145.0 0.0   1   0.0 0.0 2473145.0, 2473145.0 1.56
BXD15/TyJ m 1220049.0 0.0   1   0.0 0.0 1220049.0, 1220049.0 0.13
BXD18/TyJ m 545738.0 0.0   1   0.0 0.0 545738.0, 545738.0 -0.64
BXD19/TyJ m 799290.0 11040.0   2   7807.0 0.0138 791483.0, 807096.0 -0.35
BXD1/TyJ m 899270.0 0.0   1   0.0 0.0 899270.0, 899270.0 -0.23
BXD20/TyJ m 1583811.0 0.0   1   0.0 0.0 1583811.0, 1583811.0 0.55
BXD21/TyJ m 519127.0 0.0   1   0.0 0.0 519127.0, 519127.0 -0.67
BXD22/TyJ m 951974.0 0.0   1   0.0 0.0 951974.0, 951974.0 -0.17
BXD24/TyJ m 573693.0 0.0   1   0.0 0.0 573693.0, 573693.0 -0.6
BXD24/TyJ-Cep290rd16/J m 599449.0 0.0   1   0.0 0.0 599449.0, 599449.0 -0.57
BXD28/TyJ m 666759.0 5040.0   2   3564.0 0.00756 663196.0, 670323.0 -0.5
BXD29-Tlr4lps-2J/J m 749254.0 0.0   1   0.0 0.0 749254.0, 749254.0 -0.4
BXD2/TyJ m 980363.0 0.0   1   0.0 0.0 980363.0, 980363.0 -0.14
BXD32/TyJ m 252612.0 0.0   1   0.0 0.0 252612.0, 252612.0 -0.97
BXD33/TyJ m 1615584.0 0.0   1   0.0 0.0 1615584.0, 1615584.0 0.58
BXD34/TyJ m 475478.0 0.0   1   0.0 0.0 475478.0, 475478.0 -0.72
BXD36/TyJ m 335978.0 0.0   1   0.0 0.0 335978.0, 335978.0 -0.88
BXD38/TyJ m 599110.0 0.0   1   0.0 0.0 599110.0, 599110.0 -0.58
BXD39/TyJ m 870075.0 0.0   1   0.0 0.0 870075.0, 870075.0 -0.27
BXD40/TyJ m 498629.0 0.0   1   0.0 0.0 498629.0, 498629.0 -0.69
BXD42/TyJ m 986812.0 0.0   1   0.0 0.0 986812.0, 986812.0 -0.13
BXD5/TyJ m 1393220.0 0.0   1   0.0 0.0 1393220.0, 1393220.0 0.33
BXD6/TyJ m 1284132.0 0.0   1   0.0 0.0 1284132.0, 1284132.0 0.21
BXD8/TyJ m 363389.0 0.0   1   0.0 0.0 363389.0, 363389.0 -0.84
BXD9/TyJ m 1008179.0 0.0   1   0.0 0.0 1008179.0, 1008179.0 -0.11
BXH10/TyJ m 1094439.0 0.0   1   0.0 0.0 1094439.0, 1094439.0 -0.01
BXH19/TyJ m 5558002.0 0.0   1   0.0 0.0 5558002.0, 5558002.0 5.08
BXH20/KccJ m 1590405.0 0.0   1   0.0 0.0 1590405.0, 1590405.0 0.56
BXH22/KccJ m 599136.0 0.0   1   0.0 0.0 599136.0, 599136.0 -0.58
BXH2/TyJ m 1583715.0 0.0   1   0.0 0.0 1583715.0, 1583715.0 0.55
BXH4/TyJ m 1151971.0 312967.0   2   221301.0 0.272 930670.0, 1373272.0 0.06
BXH6/TyJ m 1227241.0 0.0   1   0.0 0.0 1227241.0, 1227241.0 0.14
BXH7/TyJ m 1845493.0 0.0   1   0.0 0.0 1845493.0, 1845493.0 0.85
BXH8/TyJ m 1292565.0 0.0   1   0.0 0.0 1292565.0, 1292565.0 0.22
BXH9/TyJ m 738018.0 0.0   1   0.0 0.0 738018.0, 738018.0 -0.42
C3H/HeJ m 896177.0 433216.0   2   306330.0 0.483 589847.0, 1202506.0 -0.24
C57BL/6J m 461968.0 377531.0   5 168837.0 0.817 62193.0, 1011351.0 -0.73
C57L/J m 374023.0 0.0   1   0.0 0.0 374023.0, 374023.0 -0.83
C58/J m 2185013.0 0.0   1   0.0 0.0 2185013.0, 2185013.0 1.23
CAST/EiJ m 2119222.0 0.0   1   0.0 0.0 2119222.0, 2119222.0 1.16
CBA/J m 545184.0 0.0   1   0.0 0.0 545184.0, 545184.0 -0.64
CE/J m 818759.0 0.0   1   0.0 0.0 818759.0, 818759.0 -0.32
CXB11/HiAJ m 514969.0 572546.0   2   404851.0 1.11 110118.0, 919820.0 -0.67
CXB12/HiAJ m 342490.0 384641.0   2   271982.0 1.12 70507.0, 614472.0 -0.87
CXB13/HiAJ m 734856.0 392486.0   3 226602.0 0.534 321649.0, 1102676.0 -0.42
CXB1/ByJ m 1867843.0 1448295.0   3 836173.0 0.775 756590.0, 3505780.0 0.87
CXB2/ByJ m 527509.0 102865.0   2   72737.0 0.195 454772.0, 600246.0 -0.66
CXB3/ByJ m 1139750.0 316670.0   2   223919.0 0.278 915831.0, 1363670.0 0.04
CXB4/ByJ m 580748.0 172052.0   2   121659.0 0.296 459089.0, 702408.0 -0.6
CXB6/ByJ m 488475.0 614475.0   2   434499.0 1.26 53976.0, 922974.0 -0.7
CXB7/ByJ m 672632.0 101095.0   2   71485.0 0.15 601147.0, 744118.0 -0.49
CXB8/HiAJ m 1657601.0 1106014.0   3 638557.0 0.667 399975.0, 2478892.0 0.63
CXB9/HiAJ m 270895.0 226000.0   2   159806.0 0.834 111089.0, 430701.0 -0.95
DBA/2J m 1083683.0 823504.0   4 411752.0 0.76 451962.0, 2293418.0 -0.02
FVB/NJ m 899298.0 0.0   1   0.0 0.0 899298.0, 899298.0 -0.23
I/LnJ m 1340404.0 0.0   1   0.0 0.0 1340404.0, 1340404.0 0.27
KK/HlJ m 818819.0 0.0   1   0.0 0.0 818819.0, 818819.0 -0.32
LG/J m 2174694.0 0.0   1   0.0 0.0 2174694.0, 2174694.0 1.22
LP/J m 1075211.0 0.0   1   0.0 0.0 1075211.0, 1075211.0 -0.03
MA/MyJ m 437515.0 0.0   1   0.0 0.0 437515.0, 437515.0 -0.76
NOD/ShiLtJ m 512465.0 0.0   1   0.0 0.0 512465.0, 512465.0 -0.67
NON/ShiLtJ m 3703056.0 0.0   1   0.0 0.0 3703056.0, 3703056.0 2.97
NZW/LacJ m 499992.0 0.0   1   0.0 0.0 499992.0, 499992.0 -0.69
PL/J m 920432.0 0.0   1   0.0 0.0 920432.0, 920432.0 -0.21
RIIIS/J m 203800.0 0.0   1   0.0 0.0 203800.0, 203800.0 -1.03
SEA/GnJ m 750789.0 0.0   1   0.0 0.0 750789.0, 750789.0 -0.4
SJL/J m 2313826.0 0.0   1   0.0 0.0 2313826.0, 2313826.0 1.38
SM/J m 1328252.0 0.0   1   0.0 0.0 1328252.0, 1328252.0 0.26
SWR/J m 693381.0 0.0   1   0.0 0.0 693381.0, 693381.0 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 496198.4 468285.9331 1451273.8574 0.0
AXB19b/PgnJ m 3089478.15 468285.9331 4044553.6074 2134402.6926
AXB24/PgnJ m 765028.95 468285.9331 1720104.4074 0.0
BALB/cJ m 670580.4333 382353.8633 1450396.2788 0.0
BXA16/PgnJ m 644387.9 468285.9331 1599463.3574 0.0
BXD19/TyJ m 799289.6 468285.9331 1754365.0574 0.0
BXD28/TyJ m 666759.2 468285.9331 1621834.6574 0.0
BXH4/TyJ m 1151970.7 468285.9331 2107046.1574 196895.2426
C3H/HeJ m 896176.6 468285.9331 1851252.0574 0.0
C57BL/6J m 461967.88 296170.029 1066010.6366 0.0
CXB11/HiAJ m 514969.1 468285.9331 1470044.5574 0.0
CXB12/HiAJ m 342489.9 468285.9331 1297565.3574 0.0
CXB13/HiAJ m 734855.8667 382353.8633 1514671.7122 0.0
CXB1/ByJ m 1867843.0333 382353.8633 2647658.8788 1088027.1878
CXB2/ByJ m 527508.9 468285.9331 1482584.3574 0.0
CXB3/ByJ m 1139750.15 468285.9331 2094825.6074 184674.6926
CXB4/ByJ m 580748.3 468285.9331 1535823.7574 0.0
CXB6/ByJ m 488475.2 468285.9331 1443550.6574 0.0
CXB7/ByJ m 672632.35 468285.9331 1627707.8074 0.0
CXB8/HiAJ m 1657601.4667 382353.8633 2437417.3122 877785.6212
CXB9/HiAJ m 270895.3 468285.9331 1225970.7574 0.0
DBA/2J m 1083683.4 331128.1589 1759023.7325 408343.0675




  GWAS USING LINEAR MIXED MODELS