Phenotype measure:   HMDPpheno9   OGPC_1

ID, description, units MPD:50413   OGPC_1   liver 1-oleoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-oleoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1747525   None
Median of the strain means1511241   None
SD of the strain means± 1493122
Coefficient of variation (CV)0.854
Min–max range of strain means511024   –   13255455   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 25247333303295.9 1202253966823.62 1.7014 0.0854
Residuals 32 22611516693458.3 706609896670.573


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4768342.0 0.0   1   0.0 0.0 4768342.0, 4768342.0 2.02
A/J m 908283.0 914595.0   2   646716.0 1.01 261567.0, 1555000.0 -0.56
AKR/J m 1057388.0 0.0   1   0.0 0.0 1057388.0, 1057388.0 -0.46
AXB10/PgnJ m 1361154.0 0.0   1   0.0 0.0 1361154.0, 1361154.0 -0.26
AXB12/PgnJ m 872568.0 0.0   1   0.0 0.0 872568.0, 872568.0 -0.59
AXB13/PgnJ m 536975.0 0.0   1   0.0 0.0 536975.0, 536975.0 -0.81
AXB15/PgnJ m 555405.0 0.0   1   0.0 0.0 555405.0, 555405.0 -0.8
AXB19a/PgnJ m 1874032.0 0.0   1   0.0 0.0 1874032.0, 1874032.0 0.08
AXB19b/PgnJ m 3359539.0 1359981.0   2   961652.0 0.405 2397888.0, 4321191.0 1.08
AXB19/PgnJ m 2323376.0 0.0   1   0.0 0.0 2323376.0, 2323376.0 0.39
AXB1/PgnJ m 5676882.0 0.0   1   0.0 0.0 5676882.0, 5676882.0 2.63
AXB23/PgnJ m 2180796.0 0.0   1   0.0 0.0 2180796.0, 2180796.0 0.29
AXB24/PgnJ m 1586054.0 1548631.0   2   1095047.0 0.976 491007.0, 2681102.0 -0.11
AXB2/PgnJ m 1733347.0 0.0   1   0.0 0.0 1733347.0, 1733347.0 -0.01
AXB4/PgnJ m 1792852.0 0.0   1   0.0 0.0 1792852.0, 1792852.0 0.03
AXB5/PgnJ m 847725.0 0.0   1   0.0 0.0 847725.0, 847725.0 -0.6
AXB6/PgnJ m 947367.0 0.0   1   0.0 0.0 947367.0, 947367.0 -0.54
AXB8/PgnJ m 763996.0 0.0   1   0.0 0.0 763996.0, 763996.0 -0.66
BALB/cJ m 1114908.0 480240.0   3 277267.0 0.431 560694.0, 1408317.0 -0.42
BTBR T+ Itpr3tf/J m 2198526.0 0.0   1   0.0 0.0 2198526.0, 2198526.0 0.3
BUB/BnJ m 2360565.0 0.0   1   0.0 0.0 2360565.0, 2360565.0 0.41
BXA11/PgnJ m 903006.0 0.0   1   0.0 0.0 903006.0, 903006.0 -0.57
BXA12/PgnJ m 718529.0 0.0   1   0.0 0.0 718529.0, 718529.0 -0.69
BXA13/PgnJ m 2067686.0 0.0   1   0.0 0.0 2067686.0, 2067686.0 0.21
BXA14/PgnJ m 3601678.0 0.0   1   0.0 0.0 3601678.0, 3601678.0 1.24
BXA16/PgnJ m 1142124.0 26313.0   2   18606.0 0.023 1123518.0, 1160730.0 -0.41
BXA1/PgnJ m 1354079.0 0.0   1   0.0 0.0 1354079.0, 1354079.0 -0.26
BXA24/PgnJ m 1833028.0 0.0   1   0.0 0.0 1833028.0, 1833028.0 0.06
BXA25/PgnJ m 967822.0 0.0   1   0.0 0.0 967822.0, 967822.0 -0.52
BXA26/PgnJ m 4008988.0 0.0   1   0.0 0.0 4008988.0, 4008988.0 1.51
BXA2/PgnJ m 1285596.0 0.0   1   0.0 0.0 1285596.0, 1285596.0 -0.31
BXA4/PgnJ m 1826306.0 0.0   1   0.0 0.0 1826306.0, 1826306.0 0.05
BXA7/PgnJ m 2106412.0 0.0   1   0.0 0.0 2106412.0, 2106412.0 0.24
BXA8/PgnJ m 1496237.0 0.0   1   0.0 0.0 1496237.0, 1496237.0 -0.17
BXD11/TyJ m 1044596.0 0.0   1   0.0 0.0 1044596.0, 1044596.0 -0.47
BXD12/TyJ m 3071359.0 0.0   1   0.0 0.0 3071359.0, 3071359.0 0.89
BXD13/TyJ m 657387.0 0.0   1   0.0 0.0 657387.0, 657387.0 -0.73
BXD14/TyJ m 2439688.0 0.0   1   0.0 0.0 2439688.0, 2439688.0 0.46
BXD15/TyJ m 2337428.0 0.0   1   0.0 0.0 2337428.0, 2337428.0 0.4
BXD18/TyJ m 789177.0 0.0   1   0.0 0.0 789177.0, 789177.0 -0.64
BXD19/TyJ m 1274347.0 239923.0   2   169651.0 0.188 1104696.0, 1443998.0 -0.32
BXD1/TyJ m 1581299.0 0.0   1   0.0 0.0 1581299.0, 1581299.0 -0.11
BXD20/TyJ m 1619877.0 0.0   1   0.0 0.0 1619877.0, 1619877.0 -0.09
BXD21/TyJ m 668786.0 0.0   1   0.0 0.0 668786.0, 668786.0 -0.72
BXD22/TyJ m 1568451.0 0.0   1   0.0 0.0 1568451.0, 1568451.0 -0.12
BXD24/TyJ m 1159852.0 0.0   1   0.0 0.0 1159852.0, 1159852.0 -0.39
BXD24/TyJ-Cep290rd16/J m 1067880.0 0.0   1   0.0 0.0 1067880.0, 1067880.0 -0.46
BXD28/TyJ m 811281.0 311448.0   2   220227.0 0.384 591054.0, 1031509.0 -0.63
BXD29-Tlr4lps-2J/J m 1092151.0 0.0   1   0.0 0.0 1092151.0, 1092151.0 -0.44
BXD2/TyJ m 1509068.0 0.0   1   0.0 0.0 1509068.0, 1509068.0 -0.16
BXD32/TyJ m 849435.0 0.0   1   0.0 0.0 849435.0, 849435.0 -0.6
BXD33/TyJ m 1938599.0 0.0   1   0.0 0.0 1938599.0, 1938599.0 0.13
BXD34/TyJ m 567920.0 0.0   1   0.0 0.0 567920.0, 567920.0 -0.79
BXD36/TyJ m 598542.0 0.0   1   0.0 0.0 598542.0, 598542.0 -0.77
BXD38/TyJ m 967652.0 0.0   1   0.0 0.0 967652.0, 967652.0 -0.52
BXD39/TyJ m 1743312.0 0.0   1   0.0 0.0 1743312.0, 1743312.0 0.0
BXD40/TyJ m 1174832.0 0.0   1   0.0 0.0 1174832.0, 1174832.0 -0.38
BXD42/TyJ m 1513414.0 0.0   1   0.0 0.0 1513414.0, 1513414.0 -0.16
BXD5/TyJ m 1845826.0 0.0   1   0.0 0.0 1845826.0, 1845826.0 0.07
BXD6/TyJ m 1930334.0 0.0   1   0.0 0.0 1930334.0, 1930334.0 0.12
BXD8/TyJ m 913595.0 0.0   1   0.0 0.0 913595.0, 913595.0 -0.56
BXD9/TyJ m 1581299.0 0.0   1   0.0 0.0 1581299.0, 1581299.0 -0.11
BXH10/TyJ m 1415617.0 0.0   1   0.0 0.0 1415617.0, 1415617.0 -0.22
BXH19/TyJ m 13255455.0 0.0   1   0.0 0.0 13255455.0, 13255455.0 7.71
BXH20/KccJ m 2314093.0 0.0   1   0.0 0.0 2314093.0, 2314093.0 0.38
BXH22/KccJ m 1645402.0 0.0   1   0.0 0.0 1645402.0, 1645402.0 -0.07
BXH2/TyJ m 1914417.0 0.0   1   0.0 0.0 1914417.0, 1914417.0 0.11
BXH4/TyJ m 1683632.0 804236.0   2   568680.0 0.478 1114952.0, 2252312.0 -0.04
BXH6/TyJ m 1998128.0 0.0   1   0.0 0.0 1998128.0, 1998128.0 0.17
BXH7/TyJ m 3110221.0 0.0   1   0.0 0.0 3110221.0, 3110221.0 0.91
BXH8/TyJ m 1787205.0 0.0   1   0.0 0.0 1787205.0, 1787205.0 0.03
BXH9/TyJ m 1274375.0 0.0   1   0.0 0.0 1274375.0, 1274375.0 -0.32
C3H/HeJ m 1658807.0 819590.0   2   579537.0 0.494 1079269.0, 2238344.0 -0.06
C57BL/6J m 889813.0 530189.0   5 237108.0 0.596 103336.0, 1496325.0 -0.57
C57L/J m 511024.0 0.0   1   0.0 0.0 511024.0, 511024.0 -0.83
C58/J m 2670802.0 0.0   1   0.0 0.0 2670802.0, 2670802.0 0.62
CAST/EiJ m 1965972.0 0.0   1   0.0 0.0 1965972.0, 1965972.0 0.15
CBA/J m 1217233.0 0.0   1   0.0 0.0 1217233.0, 1217233.0 -0.36
CE/J m 1549707.0 0.0   1   0.0 0.0 1549707.0, 1549707.0 -0.13
CXB11/HiAJ m 766354.0 780772.0   2   552089.0 1.02 214265.0, 1318443.0 -0.66
CXB12/HiAJ m 779701.0 707881.0   2   500548.0 0.908 279153.0, 1280249.0 -0.65
CXB13/HiAJ m 1309022.0 749390.0   3 432660.0 0.572 531704.0, 2026949.0 -0.29
CXB1/ByJ m 2972604.0 1142658.0   3 659714.0 0.384 2062529.0, 4254980.0 0.82
CXB2/ByJ m 1111908.0 146125.0   2   103326.0 0.131 1008582.0, 1215234.0 -0.43
CXB3/ByJ m 1682918.0 416544.0   2   294541.0 0.248 1388376.0, 1977459.0 -0.04
CXB4/ByJ m 1071277.0 303983.0   2   214948.0 0.284 856329.0, 1286226.0 -0.45
CXB6/ByJ m 895586.0 1062331.0   2   751181.0 1.19 144404.0, 1646767.0 -0.57
CXB7/ByJ m 1152426.0 343976.0   2   243228.0 0.298 909198.0, 1395654.0 -0.4
CXB8/HiAJ m 2033847.0 1043090.0   3 602228.0 0.513 927665.0, 2999622.0 0.19
CXB9/HiAJ m 522678.0 646030.0   3 372986.0 1.24 40206.0, 1256632.0 -0.82
DBA/2J m 1792021.0 1300982.0   4 650491.0 0.726 879287.0, 3721189.0 0.03
FVB/NJ m 1549382.0 0.0   1   0.0 0.0 1549382.0, 1549382.0 -0.13
I/LnJ m 1752755.0 0.0   1   0.0 0.0 1752755.0, 1752755.0 0.0
KK/HlJ m 1879247.0 0.0   1   0.0 0.0 1879247.0, 1879247.0 0.09
LG/J m 2360257.0 0.0   1   0.0 0.0 2360257.0, 2360257.0 0.41
LP/J m 1507900.0 0.0   1   0.0 0.0 1507900.0, 1507900.0 -0.16
MA/MyJ m 1013407.0 0.0   1   0.0 0.0 1013407.0, 1013407.0 -0.49
NOD/ShiLtJ m 1583006.0 0.0   1   0.0 0.0 1583006.0, 1583006.0 -0.11
NON/ShiLtJ m 6384994.0 0.0   1   0.0 0.0 6384994.0, 6384994.0 3.11
NZW/LacJ m 919872.0 0.0   1   0.0 0.0 919872.0, 919872.0 -0.55
PL/J m 1594906.0 0.0   1   0.0 0.0 1594906.0, 1594906.0 -0.1
RIIIS/J m 526049.0 0.0   1   0.0 0.0 526049.0, 526049.0 -0.82
SEA/GnJ m 1262060.0 0.0   1   0.0 0.0 1262060.0, 1262060.0 -0.33
SJL/J m 2718621.0 0.0   1   0.0 0.0 2718621.0, 2718621.0 0.65
SM/J m 1495918.0 0.0   1   0.0 0.0 1495918.0, 1495918.0 -0.17
SWR/J m 1288113.0 0.0   1   0.0 0.0 1288113.0, 1288113.0 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 908283.4 594394.6066 2119025.5933 0.0
AXB19b/PgnJ m 3359539.4 594394.6066 4570281.5933 2148797.2067
AXB24/PgnJ m 1586054.05 594394.6066 2796796.2433 375311.8567
BALB/cJ m 1114908.2667 485321.164 2103475.1279 126341.4054
BXA16/PgnJ m 1142123.95 594394.6066 2352866.1433 0.0
BXD19/TyJ m 1274347.2 594394.6066 2485089.3933 63605.0067
BXD28/TyJ m 811281.35 594394.6066 2022023.5433 0.0
BXH4/TyJ m 1683631.9 594394.6066 2894374.0933 472889.7067
C3H/HeJ m 1658806.55 594394.6066 2869548.7433 448064.3567
C57BL/6J m 889812.66 375928.1571 1655553.258 124072.062
CXB11/HiAJ m 766353.95 594394.6066 1977096.1433 0.0
CXB12/HiAJ m 779701.0 594394.6066 1990443.1933 0.0
CXB13/HiAJ m 1309022.3 485321.164 2297589.1612 320455.4388
CXB1/ByJ m 2972604.4667 485321.164 3961171.3279 1984037.6054
CXB2/ByJ m 1111907.75 594394.6066 2322649.9433 0.0
CXB3/ByJ m 1682917.75 594394.6066 2893659.9433 472175.5567
CXB4/ByJ m 1071277.35 594394.6066 2282019.5433 0.0
CXB6/ByJ m 895585.85 594394.6066 2106328.0433 0.0
CXB7/ByJ m 1152426.1 594394.6066 2363168.2933 0.0
CXB8/HiAJ m 2033846.9 485321.164 3022413.7612 1045280.0388
CXB9/HiAJ m 522678.5 485321.164 1511245.3612 0.0
DBA/2J m 1792021.1 420300.457 2648145.1152 935897.0848




  GWAS USING LINEAR MIXED MODELS