Project measure / variable:   HMDPpheno9   MGPC

ID, description, units MPD:50412   MGPC   liver 1-myristoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   91 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-myristoylglycerophosphocholine (16h fast), relative abundance

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-Cep290<rd16>/JBXD32/TyJNZW/LacJBXD29-Tlr4<lps-2J>/JBXA11/PgnJCXB7/ByJC57L/JBXD13/TyJBXD2/TyJ (no units) 50,000100,000150,000200,000250,000300,000350,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested91 strains
Mean of the strain means101017   None
Median of the strain means82548   None
SD of the strain means± 66795
Coefficient of variation (CV)0.661
Min–max range of strain means30678   –   354090   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 11 51790936236.1814 4708266930.5619 1.1635 0.3773
Residuals 17 68791643491.2642 4046567264.192


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 91 (91)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 60652.0 0.0   1   0.0 0.0 60652.0, 60652.0 -0.6
A/J m 60432.0 37306.0   2   26380.0 0.617 34052.0, 86812.0 -0.61
AKR/J m 268838.0 0.0   1   0.0 0.0 268838.0, 268838.0 2.51
AXB12/PgnJ m 254071.0 0.0   1   0.0 0.0 254071.0, 254071.0 2.29
AXB13/PgnJ m 51228.0 0.0   1   0.0 0.0 51228.0, 51228.0 -0.75
AXB15/PgnJ m 178943.0 0.0   1   0.0 0.0 178943.0, 178943.0 1.17
AXB19a/PgnJ m 93342.0 0.0   1   0.0 0.0 93342.0, 93342.0 -0.11
AXB19b/PgnJ m 95775.0 50265.0   2   35542.0 0.525 60232.0, 131317.0 -0.08
AXB19/PgnJ m 146631.0 0.0   1   0.0 0.0 146631.0, 146631.0 0.68
AXB1/PgnJ m 96957.0 0.0   1   0.0 0.0 96957.0, 96957.0 -0.06
AXB23/PgnJ m 74354.0 0.0   1   0.0 0.0 74354.0, 74354.0 -0.4
AXB24/PgnJ m 94975.0 0.0   1   0.0 0.0 94975.0, 94975.0 -0.09
AXB2/PgnJ m 100748.0 0.0   1   0.0 0.0 100748.0, 100748.0 0.0
AXB4/PgnJ m 70840.0 0.0   1   0.0 0.0 70840.0, 70840.0 -0.45
AXB5/PgnJ m 84225.0 0.0   1   0.0 0.0 84225.0, 84225.0 -0.25
AXB6/PgnJ m 71680.0 0.0   1   0.0 0.0 71680.0, 71680.0 -0.44
AXB8/PgnJ m 90691.0 0.0   1   0.0 0.0 90691.0, 90691.0 -0.15
BALB/cJ m 49854.0 0.0   1   0.0 0.0 49854.0, 49854.0 -0.77
BUB/BnJ m 69016.0 0.0   1   0.0 0.0 69016.0, 69016.0 -0.48
BXA11/PgnJ m 38801.0 0.0   1   0.0 0.0 38801.0, 38801.0 -0.93
BXA12/PgnJ m 82710.0 0.0   1   0.0 0.0 82710.0, 82710.0 -0.27
BXA13/PgnJ m 275195.0 0.0   1   0.0 0.0 275195.0, 275195.0 2.61
BXA14/PgnJ m 149338.0 0.0   1   0.0 0.0 149338.0, 149338.0 0.72
BXA16/PgnJ m 65179.0 14653.0   2   10361.0 0.225 54818.0, 75540.0 -0.54
BXA24/PgnJ m 49882.0 0.0   1   0.0 0.0 49882.0, 49882.0 -0.77
BXA25/PgnJ m 65033.0 0.0   1   0.0 0.0 65033.0, 65033.0 -0.54
BXA26/PgnJ m 109268.0 0.0   1   0.0 0.0 109268.0, 109268.0 0.12
BXA2/PgnJ m 78564.0 0.0   1   0.0 0.0 78564.0, 78564.0 -0.34
BXA4/PgnJ m 135632.0 0.0   1   0.0 0.0 135632.0, 135632.0 0.52
BXA7/PgnJ m 143704.0 0.0   1   0.0 0.0 143704.0, 143704.0 0.64
BXA8/PgnJ m 354090.0 0.0   1   0.0 0.0 354090.0, 354090.0 3.79
BXD11/TyJ m 50772.0 0.0   1   0.0 0.0 50772.0, 50772.0 -0.75
BXD12/TyJ m 65735.0 0.0   1   0.0 0.0 65735.0, 65735.0 -0.53
BXD13/TyJ m 31914.0 0.0   1   0.0 0.0 31914.0, 31914.0 -1.03
BXD19/TyJ m 69225.0 6813.0   2   4818.0 0.0984 64407.0, 74043.0 -0.48
BXD20/TyJ m 59381.0 0.0   1   0.0 0.0 59381.0, 59381.0 -0.62
BXD21/TyJ m 79291.0 0.0   1   0.0 0.0 79291.0, 79291.0 -0.33
BXD22/TyJ m 106736.0 0.0   1   0.0 0.0 106736.0, 106736.0 0.09
BXD24/TyJ m 56779.0 0.0   1   0.0 0.0 56779.0, 56779.0 -0.66
BXD24/TyJ-Cep290rd16/J m 48349.0 0.0   1   0.0 0.0 48349.0, 48349.0 -0.79
BXD28/TyJ m 138412.0 93353.0   2   66011.0 0.674 72401.0, 204422.0 0.56
BXD29-Tlr4lps-2J/J m 38894.0 0.0   1   0.0 0.0 38894.0, 38894.0 -0.93
BXD2/TyJ m 30678.0 0.0   1   0.0 0.0 30678.0, 30678.0 -1.05
BXD32/TyJ m 39953.0 0.0   1   0.0 0.0 39953.0, 39953.0 -0.91
BXD33/TyJ m 124600.0 0.0   1   0.0 0.0 124600.0, 124600.0 0.35
BXD34/TyJ m 70106.0 0.0   1   0.0 0.0 70106.0, 70106.0 -0.46
BXD36/TyJ m 112336.0 0.0   1   0.0 0.0 112336.0, 112336.0 0.17
BXD39/TyJ m 60650.0 0.0   1   0.0 0.0 60650.0, 60650.0 -0.6
BXD40/TyJ m 54801.0 0.0   1   0.0 0.0 54801.0, 54801.0 -0.69
BXD42/TyJ m 125303.0 0.0   1   0.0 0.0 125303.0, 125303.0 0.36
BXD5/TyJ m 82548.0 0.0   1   0.0 0.0 82548.0, 82548.0 -0.28
BXD6/TyJ m 82531.0 0.0   1   0.0 0.0 82531.0, 82531.0 -0.28
BXD8/TyJ m 57362.0 0.0   1   0.0 0.0 57362.0, 57362.0 -0.65
BXD9/TyJ m 115525.0 0.0   1   0.0 0.0 115525.0, 115525.0 0.22
BXH10/TyJ m 107977.0 0.0   1   0.0 0.0 107977.0, 107977.0 0.1
BXH19/TyJ m 82531.0 0.0   1   0.0 0.0 82531.0, 82531.0 -0.28
BXH20/KccJ m 94774.0 0.0   1   0.0 0.0 94774.0, 94774.0 -0.09
BXH22/KccJ m 86498.0 0.0   1   0.0 0.0 86498.0, 86498.0 -0.22
BXH2/TyJ m 82352.0 0.0   1   0.0 0.0 82352.0, 82352.0 -0.28
BXH4/TyJ m 63716.0 10663.0   2   7540.0 0.167 56176.0, 71255.0 -0.56
BXH6/TyJ m 104395.0 0.0   1   0.0 0.0 104395.0, 104395.0 0.05
BXH7/TyJ m 112641.0 0.0   1   0.0 0.0 112641.0, 112641.0 0.17
BXH8/TyJ m 111848.0 0.0   1   0.0 0.0 111848.0, 111848.0 0.16
BXH9/TyJ m 49422.0 0.0   1   0.0 0.0 49422.0, 49422.0 -0.77
C3H/HeJ m 68362.0 0.0   1   0.0 0.0 68362.0, 68362.0 -0.49
C57BL/6J m 68331.0 50614.0   4 25307.0 0.741 26613.0, 141567.0 -0.49
C57L/J m 31975.0 0.0   1   0.0 0.0 31975.0, 31975.0 -1.03
C58/J m 118924.0 0.0   1   0.0 0.0 118924.0, 118924.0 0.27
CAST/EiJ m 168693.0 0.0   1   0.0 0.0 168693.0, 168693.0 1.01
CBA/J m 133839.0 0.0   1   0.0 0.0 133839.0, 133839.0 0.49
CE/J m 95974.0 0.0   1   0.0 0.0 95974.0, 95974.0 -0.08
CXB12/HiAJ m 91512.0 0.0   1   0.0 0.0 91512.0, 91512.0 -0.14
CXB13/HiAJ m 55279.0 0.0   1   0.0 0.0 55279.0, 55279.0 -0.68
CXB1/ByJ m 173909.0 128177.0   3 74003.0 0.737 89829.0, 321436.0 1.09
CXB2/ByJ m 110979.0 4002.0   2   2830.0 0.0361 108150.0, 113809.0 0.15
CXB3/ByJ m 167879.0 16887.0   2   11941.0 0.101 155938.0, 179820.0 1.0
CXB7/ByJ m 35350.0 7426.0   2   5251.0 0.21 30099.0, 40601.0 -0.98
CXB8/HiAJ m 70846.0 0.0   1   0.0 0.0 70846.0, 70846.0 -0.45
DBA/2J m 111941.0 70435.0   4 35217.0 0.629 52481.0, 210963.0 0.16
FVB/NJ m 65166.0 0.0   1   0.0 0.0 65166.0, 65166.0 -0.54
KK/HlJ m 51002.0 0.0   1   0.0 0.0 51002.0, 51002.0 -0.75
LG/J m 92835.0 0.0   1   0.0 0.0 92835.0, 92835.0 -0.12
LP/J m 330302.0 0.0   1   0.0 0.0 330302.0, 330302.0 3.43
NOD/ShiLtJ m 90708.0 0.0   1   0.0 0.0 90708.0, 90708.0 -0.15
NON/ShiLtJ m 323185.0 0.0   1   0.0 0.0 323185.0, 323185.0 3.33
NZW/LacJ m 38941.0 0.0   1   0.0 0.0 38941.0, 38941.0 -0.93
RIIIS/J m 89354.0 0.0   1   0.0 0.0 89354.0, 89354.0 -0.17
SEA/GnJ m 48605.0 0.0   1   0.0 0.0 48605.0, 48605.0 -0.78
SJL/J m 69472.0 0.0   1   0.0 0.0 69472.0, 69472.0 -0.47
SM/J m 272336.0 0.0   1   0.0 0.0 272336.0, 272336.0 2.56
SWR/J m 58189.0 0.0   1   0.0 0.0 58189.0, 58189.0 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 60432.0 44980.9252 155333.4567 0.0
AXB19b/PgnJ m 95774.65 44980.9252 190676.1067 873.1933
BXA16/PgnJ m 65179.0 44980.9252 160080.4567 0.0
BXD19/TyJ m 69224.95 44980.9252 164126.4067 0.0
BXD28/TyJ m 138411.65 44980.9252 233313.1067 43510.1933
BXH4/TyJ m 63715.5 44980.9252 158616.9567 0.0
C57BL/6J m 68330.65 31806.3172 135436.1136 1225.1864
CXB1/ByJ m 173909.4333 36726.7716 251396.1483 96422.7184
CXB2/ByJ m 110979.3 44980.9252 205880.7567 16077.8433
CXB3/ByJ m 167878.95 44980.9252 262780.4067 72977.4933
CXB7/ByJ m 35350.2 44980.9252 130251.6567 0.0
DBA/2J m 111941.125 31806.3172 179046.5886 44835.6614




  GWAS USING LINEAR MIXED MODELS

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