Phenotype measure:   HMDPpheno9   MGPC

ID, description, units MPD:50412   MGPC   liver 1-myristoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   91 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-myristoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested91 strains
Mean of the strain means101017   None
Median of the strain means82548   None
SD of the strain means± 66795
Coefficient of variation (CV)0.661
Min–max range of strain means30678   –   354090   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 11 51790936236.1814 4708266930.5619 1.1635 0.3773
Residuals 17 68791643491.2642 4046567264.192


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 60652.0 0.0   1   0.0 0.0 60652.0, 60652.0 -0.6
A/J m 60432.0 37306.0   2   26380.0 0.617 34052.0, 86812.0 -0.61
AKR/J m 268838.0 0.0   1   0.0 0.0 268838.0, 268838.0 2.51
AXB12/PgnJ m 254071.0 0.0   1   0.0 0.0 254071.0, 254071.0 2.29
AXB13/PgnJ m 51228.0 0.0   1   0.0 0.0 51228.0, 51228.0 -0.75
AXB15/PgnJ m 178943.0 0.0   1   0.0 0.0 178943.0, 178943.0 1.17
AXB19a/PgnJ m 93342.0 0.0   1   0.0 0.0 93342.0, 93342.0 -0.11
AXB19b/PgnJ m 95775.0 50265.0   2   35542.0 0.525 60232.0, 131317.0 -0.08
AXB19/PgnJ m 146631.0 0.0   1   0.0 0.0 146631.0, 146631.0 0.68
AXB1/PgnJ m 96957.0 0.0   1   0.0 0.0 96957.0, 96957.0 -0.06
AXB23/PgnJ m 74354.0 0.0   1   0.0 0.0 74354.0, 74354.0 -0.4
AXB24/PgnJ m 94975.0 0.0   1   0.0 0.0 94975.0, 94975.0 -0.09
AXB2/PgnJ m 100748.0 0.0   1   0.0 0.0 100748.0, 100748.0 0.0
AXB4/PgnJ m 70840.0 0.0   1   0.0 0.0 70840.0, 70840.0 -0.45
AXB5/PgnJ m 84225.0 0.0   1   0.0 0.0 84225.0, 84225.0 -0.25
AXB6/PgnJ m 71680.0 0.0   1   0.0 0.0 71680.0, 71680.0 -0.44
AXB8/PgnJ m 90691.0 0.0   1   0.0 0.0 90691.0, 90691.0 -0.15
BALB/cJ m 49854.0 0.0   1   0.0 0.0 49854.0, 49854.0 -0.77
BUB/BnJ m 69016.0 0.0   1   0.0 0.0 69016.0, 69016.0 -0.48
BXA11/PgnJ m 38801.0 0.0   1   0.0 0.0 38801.0, 38801.0 -0.93
BXA12/PgnJ m 82710.0 0.0   1   0.0 0.0 82710.0, 82710.0 -0.27
BXA13/PgnJ m 275195.0 0.0   1   0.0 0.0 275195.0, 275195.0 2.61
BXA14/PgnJ m 149338.0 0.0   1   0.0 0.0 149338.0, 149338.0 0.72
BXA16/PgnJ m 65179.0 14653.0   2   10361.0 0.225 54818.0, 75540.0 -0.54
BXA24/PgnJ m 49882.0 0.0   1   0.0 0.0 49882.0, 49882.0 -0.77
BXA25/PgnJ m 65033.0 0.0   1   0.0 0.0 65033.0, 65033.0 -0.54
BXA26/PgnJ m 109268.0 0.0   1   0.0 0.0 109268.0, 109268.0 0.12
BXA2/PgnJ m 78564.0 0.0   1   0.0 0.0 78564.0, 78564.0 -0.34
BXA4/PgnJ m 135632.0 0.0   1   0.0 0.0 135632.0, 135632.0 0.52
BXA7/PgnJ m 143704.0 0.0   1   0.0 0.0 143704.0, 143704.0 0.64
BXA8/PgnJ m 354090.0 0.0   1   0.0 0.0 354090.0, 354090.0 3.79
BXD11/TyJ m 50772.0 0.0   1   0.0 0.0 50772.0, 50772.0 -0.75
BXD12/TyJ m 65735.0 0.0   1   0.0 0.0 65735.0, 65735.0 -0.53
BXD13/TyJ m 31914.0 0.0   1   0.0 0.0 31914.0, 31914.0 -1.03
BXD19/TyJ m 69225.0 6813.0   2   4818.0 0.0984 64407.0, 74043.0 -0.48
BXD20/TyJ m 59381.0 0.0   1   0.0 0.0 59381.0, 59381.0 -0.62
BXD21/TyJ m 79291.0 0.0   1   0.0 0.0 79291.0, 79291.0 -0.33
BXD22/TyJ m 106736.0 0.0   1   0.0 0.0 106736.0, 106736.0 0.09
BXD24/TyJ m 56779.0 0.0   1   0.0 0.0 56779.0, 56779.0 -0.66
BXD24/TyJ-Cep290rd16/J m 48349.0 0.0   1   0.0 0.0 48349.0, 48349.0 -0.79
BXD28/TyJ m 138412.0 93353.0   2   66011.0 0.674 72401.0, 204422.0 0.56
BXD29-Tlr4lps-2J/J m 38894.0 0.0   1   0.0 0.0 38894.0, 38894.0 -0.93
BXD2/TyJ m 30678.0 0.0   1   0.0 0.0 30678.0, 30678.0 -1.05
BXD32/TyJ m 39953.0 0.0   1   0.0 0.0 39953.0, 39953.0 -0.91
BXD33/TyJ m 124600.0 0.0   1   0.0 0.0 124600.0, 124600.0 0.35
BXD34/TyJ m 70106.0 0.0   1   0.0 0.0 70106.0, 70106.0 -0.46
BXD36/TyJ m 112336.0 0.0   1   0.0 0.0 112336.0, 112336.0 0.17
BXD39/TyJ m 60650.0 0.0   1   0.0 0.0 60650.0, 60650.0 -0.6
BXD40/TyJ m 54801.0 0.0   1   0.0 0.0 54801.0, 54801.0 -0.69
BXD42/TyJ m 125303.0 0.0   1   0.0 0.0 125303.0, 125303.0 0.36
BXD5/TyJ m 82548.0 0.0   1   0.0 0.0 82548.0, 82548.0 -0.28
BXD6/TyJ m 82531.0 0.0   1   0.0 0.0 82531.0, 82531.0 -0.28
BXD8/TyJ m 57362.0 0.0   1   0.0 0.0 57362.0, 57362.0 -0.65
BXD9/TyJ m 115525.0 0.0   1   0.0 0.0 115525.0, 115525.0 0.22
BXH10/TyJ m 107977.0 0.0   1   0.0 0.0 107977.0, 107977.0 0.1
BXH19/TyJ m 82531.0 0.0   1   0.0 0.0 82531.0, 82531.0 -0.28
BXH20/KccJ m 94774.0 0.0   1   0.0 0.0 94774.0, 94774.0 -0.09
BXH22/KccJ m 86498.0 0.0   1   0.0 0.0 86498.0, 86498.0 -0.22
BXH2/TyJ m 82352.0 0.0   1   0.0 0.0 82352.0, 82352.0 -0.28
BXH4/TyJ m 63716.0 10663.0   2   7540.0 0.167 56176.0, 71255.0 -0.56
BXH6/TyJ m 104395.0 0.0   1   0.0 0.0 104395.0, 104395.0 0.05
BXH7/TyJ m 112641.0 0.0   1   0.0 0.0 112641.0, 112641.0 0.17
BXH8/TyJ m 111848.0 0.0   1   0.0 0.0 111848.0, 111848.0 0.16
BXH9/TyJ m 49422.0 0.0   1   0.0 0.0 49422.0, 49422.0 -0.77
C3H/HeJ m 68362.0 0.0   1   0.0 0.0 68362.0, 68362.0 -0.49
C57BL/6J m 68331.0 50614.0   4 25307.0 0.741 26613.0, 141567.0 -0.49
C57L/J m 31975.0 0.0   1   0.0 0.0 31975.0, 31975.0 -1.03
C58/J m 118924.0 0.0   1   0.0 0.0 118924.0, 118924.0 0.27
CAST/EiJ m 168693.0 0.0   1   0.0 0.0 168693.0, 168693.0 1.01
CBA/J m 133839.0 0.0   1   0.0 0.0 133839.0, 133839.0 0.49
CE/J m 95974.0 0.0   1   0.0 0.0 95974.0, 95974.0 -0.08
CXB12/HiAJ m 91512.0 0.0   1   0.0 0.0 91512.0, 91512.0 -0.14
CXB13/HiAJ m 55279.0 0.0   1   0.0 0.0 55279.0, 55279.0 -0.68
CXB1/ByJ m 173909.0 128177.0   3 74003.0 0.737 89829.0, 321436.0 1.09
CXB2/ByJ m 110979.0 4002.0   2   2830.0 0.0361 108150.0, 113809.0 0.15
CXB3/ByJ m 167879.0 16887.0   2   11941.0 0.101 155938.0, 179820.0 1.0
CXB7/ByJ m 35350.0 7426.0   2   5251.0 0.21 30099.0, 40601.0 -0.98
CXB8/HiAJ m 70846.0 0.0   1   0.0 0.0 70846.0, 70846.0 -0.45
DBA/2J m 111941.0 70435.0   4 35217.0 0.629 52481.0, 210963.0 0.16
FVB/NJ m 65166.0 0.0   1   0.0 0.0 65166.0, 65166.0 -0.54
KK/HlJ m 51002.0 0.0   1   0.0 0.0 51002.0, 51002.0 -0.75
LG/J m 92835.0 0.0   1   0.0 0.0 92835.0, 92835.0 -0.12
LP/J m 330302.0 0.0   1   0.0 0.0 330302.0, 330302.0 3.43
NOD/ShiLtJ m 90708.0 0.0   1   0.0 0.0 90708.0, 90708.0 -0.15
NON/ShiLtJ m 323185.0 0.0   1   0.0 0.0 323185.0, 323185.0 3.33
NZW/LacJ m 38941.0 0.0   1   0.0 0.0 38941.0, 38941.0 -0.93
RIIIS/J m 89354.0 0.0   1   0.0 0.0 89354.0, 89354.0 -0.17
SEA/GnJ m 48605.0 0.0   1   0.0 0.0 48605.0, 48605.0 -0.78
SJL/J m 69472.0 0.0   1   0.0 0.0 69472.0, 69472.0 -0.47
SM/J m 272336.0 0.0   1   0.0 0.0 272336.0, 272336.0 2.56
SWR/J m 58189.0 0.0   1   0.0 0.0 58189.0, 58189.0 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 60432.0 44980.9252 155333.4567 0.0
AXB19b/PgnJ m 95774.65 44980.9252 190676.1067 873.1933
BXA16/PgnJ m 65179.0 44980.9252 160080.4567 0.0
BXD19/TyJ m 69224.95 44980.9252 164126.4067 0.0
BXD28/TyJ m 138411.65 44980.9252 233313.1067 43510.1933
BXH4/TyJ m 63715.5 44980.9252 158616.9567 0.0
C57BL/6J m 68330.65 31806.3172 135436.1136 1225.1864
CXB1/ByJ m 173909.4333 36726.7716 251396.1483 96422.7184
CXB2/ByJ m 110979.3 44980.9252 205880.7567 16077.8433
CXB3/ByJ m 167878.95 44980.9252 262780.4067 72977.4933
CXB7/ByJ m 35350.2 44980.9252 130251.6567 0.0
DBA/2J m 111941.125 31806.3172 179046.5886 44835.6614




  GWAS USING LINEAR MIXED MODELS