Project measure / variable:   HMDPpheno9   LGPC_1

ID, description, units MPD:50409   LGPC_1   liver 1-linoleoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-linoleoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1944104   None
Median of the strain means1512320   None
SD of the strain means± 1387660
Coefficient of variation (CV)0.714
Min–max range of strain means449864   –   9361454   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 45408426689277.1 2162306032822.72 1.8515 0.0549
Residuals 33 38540334138056.3 1167888913274.43


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4840296.0 0.0   1   0.0 0.0 4840296.0, 4840296.0 2.09
A/J m 860167.0 855044.0   2   604608.0 0.994 255559.0, 1464774.0 -0.78
AKR/J m 769718.0 0.0   1   0.0 0.0 769718.0, 769718.0 -0.85
AXB10/PgnJ m 1318730.0 0.0   1   0.0 0.0 1318730.0, 1318730.0 -0.45
AXB12/PgnJ m 833786.0 0.0   1   0.0 0.0 833786.0, 833786.0 -0.8
AXB13/PgnJ m 955726.0 0.0   1   0.0 0.0 955726.0, 955726.0 -0.71
AXB15/PgnJ m 711258.0 0.0   1   0.0 0.0 711258.0, 711258.0 -0.89
AXB19a/PgnJ m 2116489.0 0.0   1   0.0 0.0 2116489.0, 2116489.0 0.12
AXB19b/PgnJ m 3945182.0 1143280.0   2   808421.0 0.29 3136761.0, 4753602.0 1.44
AXB19/PgnJ m 4613017.0 0.0   1   0.0 0.0 4613017.0, 4613017.0 1.92
AXB1/PgnJ m 6951711.0 0.0   1   0.0 0.0 6951711.0, 6951711.0 3.61
AXB23/PgnJ m 2879506.0 0.0   1   0.0 0.0 2879506.0, 2879506.0 0.67
AXB24/PgnJ m 1647726.0 1374697.0   2   972058.0 0.834 675668.0, 2619784.0 -0.21
AXB2/PgnJ m 1371318.0 0.0   1   0.0 0.0 1371318.0, 1371318.0 -0.41
AXB4/PgnJ m 1368894.0 0.0   1   0.0 0.0 1368894.0, 1368894.0 -0.41
AXB5/PgnJ m 960868.0 0.0   1   0.0 0.0 960868.0, 960868.0 -0.71
AXB6/PgnJ m 1995422.0 0.0   1   0.0 0.0 1995422.0, 1995422.0 0.04
AXB8/PgnJ m 883922.0 0.0   1   0.0 0.0 883922.0, 883922.0 -0.76
BALB/cJ m 1107703.0 620305.0   3 358133.0 0.56 466680.0, 1704973.0 -0.6
BTBR T+ Itpr3tf/J m 1341842.0 0.0   1   0.0 0.0 1341842.0, 1341842.0 -0.43
BUB/BnJ m 3665337.0 0.0   1   0.0 0.0 3665337.0, 3665337.0 1.24
BXA11/PgnJ m 892326.0 0.0   1   0.0 0.0 892326.0, 892326.0 -0.76
BXA12/PgnJ m 698665.0 0.0   1   0.0 0.0 698665.0, 698665.0 -0.9
BXA13/PgnJ m 2634121.0 0.0   1   0.0 0.0 2634121.0, 2634121.0 0.5
BXA14/PgnJ m 4574568.0 0.0   1   0.0 0.0 4574568.0, 4574568.0 1.9
BXA16/PgnJ m 1203612.0 15560.0   2   11002.0 0.0129 1192610.0, 1214615.0 -0.53
BXA1/PgnJ m 1396855.0 0.0   1   0.0 0.0 1396855.0, 1396855.0 -0.39
BXA24/PgnJ m 2278288.0 0.0   1   0.0 0.0 2278288.0, 2278288.0 0.24
BXA25/PgnJ m 893620.0 0.0   1   0.0 0.0 893620.0, 893620.0 -0.76
BXA26/PgnJ m 3459444.0 0.0   1   0.0 0.0 3459444.0, 3459444.0 1.09
BXA2/PgnJ m 1455800.0 0.0   1   0.0 0.0 1455800.0, 1455800.0 -0.35
BXA4/PgnJ m 1319640.0 0.0   1   0.0 0.0 1319640.0, 1319640.0 -0.45
BXA7/PgnJ m 2939308.0 0.0   1   0.0 0.0 2939308.0, 2939308.0 0.72
BXA8/PgnJ m 1313101.0 0.0   1   0.0 0.0 1313101.0, 1313101.0 -0.45
BXD11/TyJ m 1101227.0 0.0   1   0.0 0.0 1101227.0, 1101227.0 -0.61
BXD12/TyJ m 3893701.0 0.0   1   0.0 0.0 3893701.0, 3893701.0 1.4
BXD13/TyJ m 954476.0 0.0   1   0.0 0.0 954476.0, 954476.0 -0.71
BXD14/TyJ m 2428533.0 0.0   1   0.0 0.0 2428533.0, 2428533.0 0.35
BXD15/TyJ m 1681152.0 0.0   1   0.0 0.0 1681152.0, 1681152.0 -0.19
BXD18/TyJ m 1027533.0 0.0   1   0.0 0.0 1027533.0, 1027533.0 -0.66
BXD19/TyJ m 1825065.0 309757.0   2   219031.0 0.17 1606034.0, 2044096.0 -0.09
BXD1/TyJ m 1536648.0 0.0   1   0.0 0.0 1536648.0, 1536648.0 -0.29
BXD20/TyJ m 1957784.0 0.0   1   0.0 0.0 1957784.0, 1957784.0 0.01
BXD21/TyJ m 835125.0 0.0   1   0.0 0.0 835125.0, 835125.0 -0.8
BXD22/TyJ m 1701134.0 0.0   1   0.0 0.0 1701134.0, 1701134.0 -0.18
BXD24/TyJ m 1077354.0 0.0   1   0.0 0.0 1077354.0, 1077354.0 -0.62
BXD24/TyJ-Cep290rd16/J m 797379.0 0.0   1   0.0 0.0 797379.0, 797379.0 -0.83
BXD28/TyJ m 1305232.0 233882.0   2   165380.0 0.179 1139852.0, 1470611.0 -0.46
BXD29-Tlr4lps-2J/J m 1161977.0 0.0   1   0.0 0.0 1161977.0, 1161977.0 -0.56
BXD2/TyJ m 1500711.0 0.0   1   0.0 0.0 1500711.0, 1500711.0 -0.32
BXD32/TyJ m 927141.0 0.0   1   0.0 0.0 927141.0, 927141.0 -0.73
BXD33/TyJ m 2305034.0 0.0   1   0.0 0.0 2305034.0, 2305034.0 0.26
BXD34/TyJ m 1259410.0 0.0   1   0.0 0.0 1259410.0, 1259410.0 -0.49
BXD36/TyJ m 693485.0 0.0   1   0.0 0.0 693485.0, 693485.0 -0.9
BXD38/TyJ m 940377.0 0.0   1   0.0 0.0 940377.0, 940377.0 -0.72
BXD39/TyJ m 1493129.0 0.0   1   0.0 0.0 1493129.0, 1493129.0 -0.32
BXD40/TyJ m 1539762.0 0.0   1   0.0 0.0 1539762.0, 1539762.0 -0.29
BXD42/TyJ m 2056804.0 0.0   1   0.0 0.0 2056804.0, 2056804.0 0.08
BXD5/TyJ m 1920256.0 0.0   1   0.0 0.0 1920256.0, 1920256.0 -0.02
BXD6/TyJ m 2434613.0 0.0   1   0.0 0.0 2434613.0, 2434613.0 0.35
BXD8/TyJ m 1106853.0 0.0   1   0.0 0.0 1106853.0, 1106853.0 -0.6
BXD9/TyJ m 2033894.0 0.0   1   0.0 0.0 2033894.0, 2033894.0 0.06
BXH10/TyJ m 1759711.0 0.0   1   0.0 0.0 1759711.0, 1759711.0 -0.13
BXH19/TyJ m 6293231.0 0.0   1   0.0 0.0 6293231.0, 6293231.0 3.13
BXH20/KccJ m 3648949.0 0.0   1   0.0 0.0 3648949.0, 3648949.0 1.23
BXH22/KccJ m 1701721.0 0.0   1   0.0 0.0 1701721.0, 1701721.0 -0.17
BXH2/TyJ m 2383865.0 0.0   1   0.0 0.0 2383865.0, 2383865.0 0.32
BXH4/TyJ m 1992515.0 271111.0   2   191704.0 0.136 1800810.0, 2184219.0 0.03
BXH6/TyJ m 2271755.0 0.0   1   0.0 0.0 2271755.0, 2271755.0 0.24
BXH7/TyJ m 2713983.0 0.0   1   0.0 0.0 2713983.0, 2713983.0 0.55
BXH8/TyJ m 1554491.0 0.0   1   0.0 0.0 1554491.0, 1554491.0 -0.28
BXH9/TyJ m 1039076.0 0.0   1   0.0 0.0 1039076.0, 1039076.0 -0.65
C3H/HeJ m 1615680.0 1187038.0   2   839363.0 0.735 776317.0, 2455043.0 -0.24
C57BL/6J m 1384809.0 850335.0   5 380281.0 0.614 137653.0, 2198374.0 -0.4
C57L/J m 638779.0 0.0   1   0.0 0.0 638779.0, 638779.0 -0.94
C58/J m 3032242.0 0.0   1   0.0 0.0 3032242.0, 3032242.0 0.78
CAST/EiJ m 4614317.0 0.0   1   0.0 0.0 4614317.0, 4614317.0 1.92
CBA/J m 1357375.0 0.0   1   0.0 0.0 1357375.0, 1357375.0 -0.42
CE/J m 1697470.0 0.0   1   0.0 0.0 1697470.0, 1697470.0 -0.18
CXB11/HiAJ m 667294.0 422972.0   2   299086.0 0.634 368208.0, 966381.0 -0.92
CXB12/HiAJ m 1383016.0 1206379.0   2   853038.0 0.872 529978.0, 2236054.0 -0.4
CXB13/HiAJ m 1398774.0 124933.0   3 72130.0 0.0893 1326188.0, 1543033.0 -0.39
CXB1/ByJ m 4052509.0 2390435.0   3 1380118.0 0.59 2213506.0, 6754630.0 1.52
CXB2/ByJ m 1455656.0 287486.0   2   203283.0 0.197 1252373.0, 1658939.0 -0.35
CXB3/ByJ m 2603223.0 1013919.0   2   716949.0 0.389 1886274.0, 3320171.0 0.47
CXB4/ByJ m 1282875.0 229427.0   2   162229.0 0.179 1120646.0, 1445104.0 -0.48
CXB6/ByJ m 856253.0 1229208.0   3 709683.0 1.44 16427.0, 2267110.0 -0.78
CXB7/ByJ m 1612162.0 221450.0   2   156589.0 0.137 1455574.0, 1768751.0 -0.24
CXB8/HiAJ m 2900550.0 1709383.0   3 986913.0 0.589 990409.0, 4286332.0 0.69
CXB9/HiAJ m 678896.0 738770.0   3 426529.0 1.09 91407.0, 1508293.0 -0.91
DBA/2J m 2040317.0 1297874.0   4 648937.0 0.636 1345380.0, 3985012.0 0.07
FVB/NJ m 1523929.0 0.0   1   0.0 0.0 1523929.0, 1523929.0 -0.3
I/LnJ m 1356648.0 0.0   1   0.0 0.0 1356648.0, 1356648.0 -0.42
KK/HlJ m 1664649.0 0.0   1   0.0 0.0 1664649.0, 1664649.0 -0.2
LG/J m 2044729.0 0.0   1   0.0 0.0 2044729.0, 2044729.0 0.07
LP/J m 1151143.0 0.0   1   0.0 0.0 1151143.0, 1151143.0 -0.57
MA/MyJ m 671573.0 0.0   1   0.0 0.0 671573.0, 671573.0 -0.92
NOD/ShiLtJ m 1817013.0 0.0   1   0.0 0.0 1817013.0, 1817013.0 -0.09
NON/ShiLtJ m 9361454.0 0.0   1   0.0 0.0 9361454.0, 9361454.0 5.35
NZW/LacJ m 846106.0 0.0   1   0.0 0.0 846106.0, 846106.0 -0.79
PL/J m 2568777.0 0.0   1   0.0 0.0 2568777.0, 2568777.0 0.45
RIIIS/J m 449864.0 0.0   1   0.0 0.0 449864.0, 449864.0 -1.08
SEA/GnJ m 1461660.0 0.0   1   0.0 0.0 1461660.0, 1461660.0 -0.35
SJL/J m 2762744.0 0.0   1   0.0 0.0 2762744.0, 2762744.0 0.59
SM/J m 2713536.0 0.0   1   0.0 0.0 2713536.0, 2713536.0 0.55
SWR/J m 1355945.0 0.0   1   0.0 0.0 1355945.0, 1355945.0 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 860166.9 764162.5852 2414867.3694 0.0
AXB19b/PgnJ m 3945181.75 764162.5852 5499882.2194 2390481.2806
AXB24/PgnJ m 1647726.25 764162.5852 3202426.7194 93025.7806
BALB/cJ m 1107702.6333 623936.1381 2377110.2509 0.0
BXA16/PgnJ m 1203612.1 764162.5852 2758312.5694 0.0
BXD19/TyJ m 1825064.85 764162.5852 3379765.3194 270364.3806
BXD28/TyJ m 1305231.65 764162.5852 2859932.1194 0.0
BXH4/TyJ m 1992514.55 764162.5852 3547215.0194 437814.0806
C3H/HeJ m 1615679.95 764162.5852 3170380.4194 60979.4806
C57BL/6J m 1384809.44 483298.8544 2368088.3525 401530.5275
CXB11/HiAJ m 667294.4 764162.5852 2221994.8694 0.0
CXB12/HiAJ m 1383016.05 764162.5852 2937716.5194 0.0
CXB13/HiAJ m 1398774.3667 623936.1381 2668181.9843 129366.7491
CXB1/ByJ m 4052509.0 623936.1381 5321916.6176 2783101.3824
CXB2/ByJ m 1455656.05 764162.5852 3010356.5194 0.0
CXB3/ByJ m 2603222.6 764162.5852 4157923.0694 1048522.1306
CXB4/ByJ m 1282875.4 764162.5852 2837575.8694 0.0
CXB6/ByJ m 856253.0333 623936.1381 2125660.6509 0.0
CXB7/ByJ m 1612162.4 764162.5852 3166862.8694 57461.9306
CXB8/HiAJ m 2900550.4 623936.1381 4169958.0176 1631142.7824
CXB9/HiAJ m 678896.2333 623936.1381 1948303.8509 0.0
DBA/2J m 2040316.55 540344.5459 3139655.7946 940977.3054




  GWAS USING LINEAR MIXED MODELS