Phenotype measure:   HMDPpheno9   HGPC

ID, description, units MPD:50408   HGPC   liver 1-heptadecanoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   99 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno9 - liver 1-heptadecanoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means169103   None
Median of the strain means130863   None
SD of the strain means± 149381
Coefficient of variation (CV)0.883
Min–max range of strain means24704   –   948591   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 15 286898077302.411 19126538486.8274 2.1181 0.062
Residuals 19 171571286211.399 9030067695.3368


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 275030.0 0.0   1   0.0 0.0 275030.0, 275030.0 0.71
A/J m 48938.0 10728.0   2   7585.0 0.219 41352.0, 56524.0 -0.8
AKR/J m 112921.0 0.0   1   0.0 0.0 112921.0, 112921.0 -0.38
AXB12/PgnJ m 63890.0 0.0   1   0.0 0.0 63890.0, 63890.0 -0.7
AXB13/PgnJ m 34312.0 0.0   1   0.0 0.0 34312.0, 34312.0 -0.9
AXB15/PgnJ m 24704.0 0.0   1   0.0 0.0 24704.0, 24704.0 -0.97
AXB19a/PgnJ m 166392.0 0.0   1   0.0 0.0 166392.0, 166392.0 -0.02
AXB19b/PgnJ m 450615.0 280371.0   2   198252.0 0.622 252363.0, 648867.0 1.88
AXB19/PgnJ m 153119.0 0.0   1   0.0 0.0 153119.0, 153119.0 -0.11
AXB1/PgnJ m 584885.0 0.0   1   0.0 0.0 584885.0, 584885.0 2.78
AXB23/PgnJ m 253146.0 0.0   1   0.0 0.0 253146.0, 253146.0 0.56
AXB24/PgnJ m 143386.0 98224.0   2   69455.0 0.685 73931.0, 212841.0 -0.17
AXB2/PgnJ m 170926.0 0.0   1   0.0 0.0 170926.0, 170926.0 0.01
AXB4/PgnJ m 114293.0 0.0   1   0.0 0.0 114293.0, 114293.0 -0.37
AXB5/PgnJ m 43676.0 0.0   1   0.0 0.0 43676.0, 43676.0 -0.84
AXB6/PgnJ m 121716.0 0.0   1   0.0 0.0 121716.0, 121716.0 -0.32
BALB/cJ m 151352.0 19146.0   2   13538.0 0.127 137814.0, 164891.0 -0.12
BTBR T+ Itpr3tf/J m 148804.0 0.0   1   0.0 0.0 148804.0, 148804.0 -0.14
BUB/BnJ m 181910.0 0.0   1   0.0 0.0 181910.0, 181910.0 0.09
BXA12/PgnJ m 47171.0 0.0   1   0.0 0.0 47171.0, 47171.0 -0.82
BXA13/PgnJ m 177205.0 0.0   1   0.0 0.0 177205.0, 177205.0 0.05
BXA14/PgnJ m 505119.0 0.0   1   0.0 0.0 505119.0, 505119.0 2.25
BXA16/PgnJ m 106564.0 26534.0   2   18762.0 0.249 87801.0, 125326.0 -0.42
BXA1/PgnJ m 94064.0 0.0   1   0.0 0.0 94064.0, 94064.0 -0.5
BXA24/PgnJ m 133519.0 0.0   1   0.0 0.0 133519.0, 133519.0 -0.24
BXA25/PgnJ m 74402.0 0.0   1   0.0 0.0 74402.0, 74402.0 -0.63
BXA26/PgnJ m 151140.0 0.0   1   0.0 0.0 151140.0, 151140.0 -0.12
BXA2/PgnJ m 105856.0 0.0   1   0.0 0.0 105856.0, 105856.0 -0.42
BXA4/PgnJ m 136103.0 0.0   1   0.0 0.0 136103.0, 136103.0 -0.22
BXA7/PgnJ m 97528.0 0.0   1   0.0 0.0 97528.0, 97528.0 -0.48
BXA8/PgnJ m 90545.0 0.0   1   0.0 0.0 90545.0, 90545.0 -0.53
BXD11/TyJ m 41664.0 0.0   1   0.0 0.0 41664.0, 41664.0 -0.85
BXD12/TyJ m 156162.0 0.0   1   0.0 0.0 156162.0, 156162.0 -0.09
BXD13/TyJ m 80240.0 0.0   1   0.0 0.0 80240.0, 80240.0 -0.59
BXD14/TyJ m 164744.0 0.0   1   0.0 0.0 164744.0, 164744.0 -0.03
BXD15/TyJ m 223218.0 0.0   1   0.0 0.0 223218.0, 223218.0 0.36
BXD18/TyJ m 38337.0 0.0   1   0.0 0.0 38337.0, 38337.0 -0.88
BXD19/TyJ m 89855.0 39054.0   2   27615.0 0.435 62240.0, 117471.0 -0.53
BXD1/TyJ m 103612.0 0.0   1   0.0 0.0 103612.0, 103612.0 -0.44
BXD20/TyJ m 130863.0 0.0   1   0.0 0.0 130863.0, 130863.0 -0.26
BXD21/TyJ m 35112.0 0.0   1   0.0 0.0 35112.0, 35112.0 -0.9
BXD22/TyJ m 119036.0 0.0   1   0.0 0.0 119036.0, 119036.0 -0.34
BXD24/TyJ m 80821.0 0.0   1   0.0 0.0 80821.0, 80821.0 -0.59
BXD28/TyJ m 60308.0 36265.0   2   25643.0 0.601 34665.0, 85951.0 -0.73
BXD29-Tlr4lps-2J/J m 58409.0 0.0   1   0.0 0.0 58409.0, 58409.0 -0.74
BXD2/TyJ m 115040.0 0.0   1   0.0 0.0 115040.0, 115040.0 -0.36
BXD32/TyJ m 77415.0 0.0   1   0.0 0.0 77415.0, 77415.0 -0.61
BXD33/TyJ m 207605.0 0.0   1   0.0 0.0 207605.0, 207605.0 0.26
BXD34/TyJ m 125569.0 0.0   1   0.0 0.0 125569.0, 125569.0 -0.29
BXD36/TyJ m 100759.0 0.0   1   0.0 0.0 100759.0, 100759.0 -0.46
BXD39/TyJ m 142385.0 0.0   1   0.0 0.0 142385.0, 142385.0 -0.18
BXD40/TyJ m 87678.0 0.0   1   0.0 0.0 87678.0, 87678.0 -0.55
BXD42/TyJ m 152840.0 0.0   1   0.0 0.0 152840.0, 152840.0 -0.11
BXD5/TyJ m 112891.0 0.0   1   0.0 0.0 112891.0, 112891.0 -0.38
BXD6/TyJ m 145451.0 0.0   1   0.0 0.0 145451.0, 145451.0 -0.16
BXD8/TyJ m 39554.0 0.0   1   0.0 0.0 39554.0, 39554.0 -0.87
BXD9/TyJ m 171838.0 0.0   1   0.0 0.0 171838.0, 171838.0 0.02
BXH19/TyJ m 847536.0 0.0   1   0.0 0.0 847536.0, 847536.0 4.54
BXH20/KccJ m 255462.0 0.0   1   0.0 0.0 255462.0, 255462.0 0.58
BXH22/KccJ m 119516.0 0.0   1   0.0 0.0 119516.0, 119516.0 -0.33
BXH2/TyJ m 92278.0 0.0   1   0.0 0.0 92278.0, 92278.0 -0.51
BXH4/TyJ m 202434.0 119260.0   2   84330.0 0.589 118104.0, 286764.0 0.22
BXH6/TyJ m 194453.0 0.0   1   0.0 0.0 194453.0, 194453.0 0.17
BXH7/TyJ m 540427.0 0.0   1   0.0 0.0 540427.0, 540427.0 2.49
BXH8/TyJ m 134614.0 0.0   1   0.0 0.0 134614.0, 134614.0 -0.23
BXH9/TyJ m 103644.0 0.0   1   0.0 0.0 103644.0, 103644.0 -0.44
C3H/HeJ m 138274.0 14238.0   2   10068.0 0.103 128206.0, 148341.0 -0.21
C57BL/6J m 67133.0 32600.0   2   23051.0 0.486 44082.0, 90185.0 -0.68
C58/J m 400463.0 0.0   1   0.0 0.0 400463.0, 400463.0 1.55
CAST/EiJ m 186046.0 0.0   1   0.0 0.0 186046.0, 186046.0 0.11
CBA/J m 130417.0 0.0   1   0.0 0.0 130417.0, 130417.0 -0.26
CE/J m 163702.0 0.0   1   0.0 0.0 163702.0, 163702.0 -0.04
CXB11/HiAJ m 81005.0 0.0   1   0.0 0.0 81005.0, 81005.0 -0.59
CXB12/HiAJ m 130863.0 0.0   1   0.0 0.0 130863.0, 130863.0 -0.26
CXB13/HiAJ m 158278.0 92974.0   2   65743.0 0.587 92535.0, 224021.0 -0.07
CXB1/ByJ m 246168.0 119319.0   3 68889.0 0.485 174351.0, 383903.0 0.52
CXB2/ByJ m 98501.0 0.0   1   0.0 0.0 98501.0, 98501.0 -0.47
CXB3/ByJ m 181037.0 1035.0   2   732.0 0.00572 180305.0, 181769.0 0.08
CXB4/ByJ m 83234.0 0.0   1   0.0 0.0 83234.0, 83234.0 -0.57
CXB6/ByJ m 119580.0 0.0   1   0.0 0.0 119580.0, 119580.0 -0.33
CXB7/ByJ m 122075.0 66306.0   2   46886.0 0.543 75189.0, 168960.0 -0.31
CXB8/HiAJ m 224343.0 61746.0   2   43661.0 0.275 180682.0, 268004.0 0.37
CXB9/HiAJ m 108174.0 0.0   1   0.0 0.0 108174.0, 108174.0 -0.41
DBA/2J m 143657.0 78471.0   4 39235.0 0.546 57263.0, 247727.0 -0.17
FVB/NJ m 258081.0 0.0   1   0.0 0.0 258081.0, 258081.0 0.6
I/LnJ m 160942.0 0.0   1   0.0 0.0 160942.0, 160942.0 -0.05
KK/HlJ m 200222.0 0.0   1   0.0 0.0 200222.0, 200222.0 0.21
LG/J m 401177.0 0.0   1   0.0 0.0 401177.0, 401177.0 1.55
LP/J m 114352.0 0.0   1   0.0 0.0 114352.0, 114352.0 -0.37
MA/MyJ m 125312.0 0.0   1   0.0 0.0 125312.0, 125312.0 -0.29
NOD/ShiLtJ m 162244.0 0.0   1   0.0 0.0 162244.0, 162244.0 -0.05
NON/ShiLtJ m 948591.0 0.0   1   0.0 0.0 948591.0, 948591.0 5.22
NZW/LacJ m 121544.0 0.0   1   0.0 0.0 121544.0, 121544.0 -0.32
PL/J m 188072.0 0.0   1   0.0 0.0 188072.0, 188072.0 0.13
RIIIS/J m 54118.0 0.0   1   0.0 0.0 54118.0, 54118.0 -0.77
SEA/GnJ m 127111.0 0.0   1   0.0 0.0 127111.0, 127111.0 -0.28
SJL/J m 458384.0 0.0   1   0.0 0.0 458384.0, 458384.0 1.94
SM/J m 182557.0 0.0   1   0.0 0.0 182557.0, 182557.0 0.09
SWR/J m 140522.0 0.0   1   0.0 0.0 140522.0, 140522.0 -0.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 48938.0 67194.0016 189576.6616 0.0
AXB19b/PgnJ m 450614.9 67194.0016 591253.5616 309976.2384
AXB24/PgnJ m 143386.2 67194.0016 284024.8616 2747.5384
BALB/cJ m 151352.45 67194.0016 291991.1116 10713.7884
BXA16/PgnJ m 106563.6 67194.0016 247202.2616 0.0
BXD19/TyJ m 89855.45 67194.0016 230494.1116 0.0
BXD28/TyJ m 60307.9 67194.0016 200946.5616 0.0
BXH4/TyJ m 202434.15 67194.0016 343072.8116 61795.4884
C3H/HeJ m 138273.65 67194.0016 278912.3116 0.0
C57BL/6J m 67133.1 67194.0016 207771.7616 0.0
CXB13/HiAJ m 158278.0 67194.0016 298916.6616 17639.3384
CXB1/ByJ m 246167.6667 54863.6725 360998.653 131336.6803
CXB3/ByJ m 181037.05 67194.0016 321675.7116 40398.3884
CXB7/ByJ m 122074.7 67194.0016 262713.3616 0.0
CXB8/HiAJ m 224343.2 67194.0016 364981.8616 83704.5384
DBA/2J m 143657.475 47513.3342 243104.0263 44210.9237




  GWAS USING LINEAR MIXED MODELS