Phenotype measure:   HMDPpheno9   EGPC_2

ID, description, units MPD:50407   EGPC_2   liver 2-eicosatrienoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   102 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-eicosatrienoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested102 strains
Mean of the strain means332024   None
Median of the strain means283158   None
SD of the strain means± 206379
Coefficient of variation (CV)0.622
Min–max range of strain means85257   –   1450031   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 19 1074939002633.38 56575736980.7042 1.0203 0.4693
Residuals 29 1608005020508.97 55448448983.0679


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 511102.0 0.0   1   0.0 0.0 511102.0, 511102.0 0.87
A/J m 203251.0 126948.0   2   89766.0 0.625 113486.0, 293017.0 -0.62
AKR/J m 299208.0 0.0   1   0.0 0.0 299208.0, 299208.0 -0.16
AXB10/PgnJ m 328471.0 0.0   1   0.0 0.0 328471.0, 328471.0 -0.02
AXB13/PgnJ m 146277.0 0.0   1   0.0 0.0 146277.0, 146277.0 -0.9
AXB19a/PgnJ m 332298.0 0.0   1   0.0 0.0 332298.0, 332298.0 0.0
AXB19b/PgnJ m 490772.0 105682.0   2   74728.0 0.215 416044.0, 565501.0 0.77
AXB19/PgnJ m 379866.0 0.0   1   0.0 0.0 379866.0, 379866.0 0.23
AXB1/PgnJ m 723587.0 0.0   1   0.0 0.0 723587.0, 723587.0 1.9
AXB23/PgnJ m 387800.0 0.0   1   0.0 0.0 387800.0, 387800.0 0.27
AXB24/PgnJ m 278325.0 211495.0   2   149550.0 0.76 128775.0, 427875.0 -0.26
AXB2/PgnJ m 219929.0 0.0   1   0.0 0.0 219929.0, 219929.0 -0.54
AXB4/PgnJ m 258856.0 0.0   1   0.0 0.0 258856.0, 258856.0 -0.35
AXB5/PgnJ m 168601.0 0.0   1   0.0 0.0 168601.0, 168601.0 -0.79
AXB6/PgnJ m 272026.0 0.0   1   0.0 0.0 272026.0, 272026.0 -0.29
AXB8/PgnJ m 212700.0 0.0   1   0.0 0.0 212700.0, 212700.0 -0.58
BALB/cJ m 284472.0 75830.0   3 43781.0 0.267 235283.0, 371801.0 -0.23
BTBR T+ Itpr3tf/J m 278911.0 0.0   1   0.0 0.0 278911.0, 278911.0 -0.26
BUB/BnJ m 419683.0 0.0   1   0.0 0.0 419683.0, 419683.0 0.42
BXA11/PgnJ m 216350.0 0.0   1   0.0 0.0 216350.0, 216350.0 -0.56
BXA12/PgnJ m 131825.0 0.0   1   0.0 0.0 131825.0, 131825.0 -0.97
BXA13/PgnJ m 430065.0 0.0   1   0.0 0.0 430065.0, 430065.0 0.48
BXA14/PgnJ m 1450031.0 0.0   1   0.0 0.0 1450031.0, 1450031.0 5.42
BXA16/PgnJ m 299143.0 27842.0   2   19687.0 0.0931 279456.0, 318830.0 -0.16
BXA1/PgnJ m 322020.0 0.0   1   0.0 0.0 322020.0, 322020.0 -0.05
BXA25/PgnJ m 162906.0 0.0   1   0.0 0.0 162906.0, 162906.0 -0.82
BXA26/PgnJ m 404836.0 0.0   1   0.0 0.0 404836.0, 404836.0 0.35
BXA2/PgnJ m 213154.0 0.0   1   0.0 0.0 213154.0, 213154.0 -0.58
BXA4/PgnJ m 183403.0 0.0   1   0.0 0.0 183403.0, 183403.0 -0.72
BXA7/PgnJ m 294940.0 0.0   1   0.0 0.0 294940.0, 294940.0 -0.18
BXA8/PgnJ m 306011.0 0.0   1   0.0 0.0 306011.0, 306011.0 -0.13
BXD11/TyJ m 215395.0 0.0   1   0.0 0.0 215395.0, 215395.0 -0.57
BXD12/TyJ m 372803.0 0.0   1   0.0 0.0 372803.0, 372803.0 0.2
BXD13/TyJ m 183999.0 0.0   1   0.0 0.0 183999.0, 183999.0 -0.72
BXD14/TyJ m 486314.0 0.0   1   0.0 0.0 486314.0, 486314.0 0.75
BXD15/TyJ m 325337.0 0.0   1   0.0 0.0 325337.0, 325337.0 -0.03
BXD18/TyJ m 140863.0 0.0   1   0.0 0.0 140863.0, 140863.0 -0.93
BXD19/TyJ m 285778.0 30986.0   2   21911.0 0.108 263868.0, 307689.0 -0.22
BXD1/TyJ m 125327.0 0.0   1   0.0 0.0 125327.0, 125327.0 -1.0
BXD20/TyJ m 284719.0 0.0   1   0.0 0.0 284719.0, 284719.0 -0.23
BXD21/TyJ m 129052.0 0.0   1   0.0 0.0 129052.0, 129052.0 -0.98
BXD22/TyJ m 269585.0 0.0   1   0.0 0.0 269585.0, 269585.0 -0.3
BXD24/TyJ m 171614.0 0.0   1   0.0 0.0 171614.0, 171614.0 -0.78
BXD24/TyJ-Cep290rd16/J m 207665.0 0.0   1   0.0 0.0 207665.0, 207665.0 -0.6
BXD28/TyJ m 201084.0 7351.0   2   5198.0 0.0366 195886.0, 206282.0 -0.63
BXD29-Tlr4lps-2J/J m 281845.0 0.0   1   0.0 0.0 281845.0, 281845.0 -0.24
BXD2/TyJ m 278817.0 0.0   1   0.0 0.0 278817.0, 278817.0 -0.26
BXD32/TyJ m 92890.0 0.0   1   0.0 0.0 92890.0, 92890.0 -1.16
BXD33/TyJ m 377266.0 0.0   1   0.0 0.0 377266.0, 377266.0 0.22
BXD34/TyJ m 219414.0 0.0   1   0.0 0.0 219414.0, 219414.0 -0.55
BXD36/TyJ m 241997.0 0.0   1   0.0 0.0 241997.0, 241997.0 -0.44
BXD38/TyJ m 151563.0 0.0   1   0.0 0.0 151563.0, 151563.0 -0.87
BXD39/TyJ m 315089.0 0.0   1   0.0 0.0 315089.0, 315089.0 -0.08
BXD40/TyJ m 240246.0 0.0   1   0.0 0.0 240246.0, 240246.0 -0.44
BXD42/TyJ m 278817.0 0.0   1   0.0 0.0 278817.0, 278817.0 -0.26
BXD5/TyJ m 303532.0 0.0   1   0.0 0.0 303532.0, 303532.0 -0.14
BXD6/TyJ m 438763.0 0.0   1   0.0 0.0 438763.0, 438763.0 0.52
BXD9/TyJ m 441121.0 0.0   1   0.0 0.0 441121.0, 441121.0 0.53
BXH10/TyJ m 261446.0 0.0   1   0.0 0.0 261446.0, 261446.0 -0.34
BXH19/TyJ m 1146310.0 0.0   1   0.0 0.0 1146310.0, 1146310.0 3.95
BXH20/KccJ m 530460.0 0.0   1   0.0 0.0 530460.0, 530460.0 0.96
BXH22/KccJ m 295489.0 0.0   1   0.0 0.0 295489.0, 295489.0 -0.18
BXH2/TyJ m 348238.0 0.0   1   0.0 0.0 348238.0, 348238.0 0.08
BXH4/TyJ m 480725.0 197863.0   2   139910.0 0.412 340814.0, 620635.0 0.72
BXH6/TyJ m 530533.0 0.0   1   0.0 0.0 530533.0, 530533.0 0.96
BXH7/TyJ m 349898.0 0.0   1   0.0 0.0 349898.0, 349898.0 0.09
BXH8/TyJ m 328413.0 0.0   1   0.0 0.0 328413.0, 328413.0 -0.02
BXH9/TyJ m 244687.0 0.0   1   0.0 0.0 244687.0, 244687.0 -0.42
C3H/HeJ m 365356.0 52338.0   2   37009.0 0.143 328348.0, 402365.0 0.16
C57BL/6J m 205169.0 85952.0   5 38439.0 0.419 94124.0, 278817.0 -0.61
C57L/J m 159022.0 0.0   1   0.0 0.0 159022.0, 159022.0 -0.84
C58/J m 479350.0 0.0   1   0.0 0.0 479350.0, 479350.0 0.71
CAST/EiJ m 785391.0 0.0   1   0.0 0.0 785391.0, 785391.0 2.2
CBA/J m 248276.0 0.0   1   0.0 0.0 248276.0, 248276.0 -0.41
CE/J m 438496.0 0.0   1   0.0 0.0 438496.0, 438496.0 0.52
CXB11/HiAJ m 221830.0 0.0   1   0.0 0.0 221830.0, 221830.0 -0.53
CXB12/HiAJ m 172266.0 31778.0   2   22470.0 0.184 149795.0, 194736.0 -0.77
CXB13/HiAJ m 261400.0 206638.0   3 119302.0 0.791 112208.0, 497258.0 -0.34
CXB1/ByJ m 789335.0 785162.0   3 453314.0 0.995 258661.0, 1691278.0 2.22
CXB2/ByJ m 249634.0 43271.0   2   30597.0 0.173 219037.0, 280231.0 -0.4
CXB3/ByJ m 241865.0 45316.0   2   32043.0 0.187 209822.0, 273908.0 -0.44
CXB4/ByJ m 191502.0 75508.0   2   53392.0 0.394 138109.0, 244894.0 -0.68
CXB6/ByJ m 85257.0 0.0   1   0.0 0.0 85257.0, 85257.0 -1.2
CXB7/ByJ m 327617.0 91159.0   2   64459.0 0.278 263157.0, 392076.0 -0.02
CXB8/HiAJ m 373095.0 134410.0   3 77601.0 0.36 217964.0, 454735.0 0.2
CXB9/HiAJ m 162984.0 162911.0   2   115196.0 1.0 47788.0, 278179.0 -0.82
DBA/2J m 280122.0 130747.0   4 65373.0 0.467 137043.0, 453461.0 -0.25
FVB/NJ m 268112.0 0.0   1   0.0 0.0 268112.0, 268112.0 -0.31
I/LnJ m 391106.0 0.0   1   0.0 0.0 391106.0, 391106.0 0.29
KK/HlJ m 557618.0 0.0   1   0.0 0.0 557618.0, 557618.0 1.09
LG/J m 552932.0 0.0   1   0.0 0.0 552932.0, 552932.0 1.07
LP/J m 289416.0 0.0   1   0.0 0.0 289416.0, 289416.0 -0.21
MA/MyJ m 232897.0 0.0   1   0.0 0.0 232897.0, 232897.0 -0.48
NOD/ShiLtJ m 210350.0 0.0   1   0.0 0.0 210350.0, 210350.0 -0.59
NON/ShiLtJ m 947385.0 0.0   1   0.0 0.0 947385.0, 947385.0 2.98
NZW/LacJ m 225536.0 0.0   1   0.0 0.0 225536.0, 225536.0 -0.52
PL/J m 352013.0 0.0   1   0.0 0.0 352013.0, 352013.0 0.1
RIIIS/J m 103083.0 0.0   1   0.0 0.0 103083.0, 103083.0 -1.11
SEA/GnJ m 222355.0 0.0   1   0.0 0.0 222355.0, 222355.0 -0.53
SJL/J m 686070.0 0.0   1   0.0 0.0 686070.0, 686070.0 1.72
SM/J m 295016.0 0.0   1   0.0 0.0 295016.0, 295016.0 -0.18
SWR/J m 306668.0 0.0   1   0.0 0.0 306668.0, 306668.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 203251.25 166505.9293 543794.1122 0.0
AXB19b/PgnJ m 490772.35 166505.9293 831315.2122 150229.4878
AXB24/PgnJ m 278324.9 166505.9293 618867.7622 0.0
BALB/cJ m 284472.3333 135951.522 562524.416 6420.2507
BXA16/PgnJ m 299142.95 166505.9293 639685.8122 0.0
BXD19/TyJ m 285778.05 166505.9293 626320.9122 0.0
BXD28/TyJ m 201083.65 166505.9293 541626.5122 0.0
BXH4/TyJ m 480724.65 166505.9293 821267.5122 140181.7878
C3H/HeJ m 365356.4 166505.9293 705899.2622 24813.5378
C57BL/6J m 205168.64 105307.5961 420546.8571 0.0
CXB12/HiAJ m 172265.85 166505.9293 512808.7122 0.0
CXB13/HiAJ m 261400.1333 135951.522 539452.216 0.0
CXB1/ByJ m 789334.5333 135951.522 1067386.616 511282.4507
CXB2/ByJ m 249633.65 166505.9293 590176.5122 0.0
CXB3/ByJ m 241864.7 166505.9293 582407.5622 0.0
CXB4/ByJ m 191501.55 166505.9293 532044.4122 0.0
CXB7/ByJ m 327616.55 166505.9293 668159.4122 0.0
CXB8/HiAJ m 373095.1667 135951.522 651147.2493 95043.084
CXB9/HiAJ m 162983.5 166505.9293 503526.3622 0.0
DBA/2J m 280121.9 117737.4717 520922.0671 39321.7329




  GWAS USING LINEAR MIXED MODELS