Project measure / variable:   HMDPpheno9   EGPC_2

ID, description, units MPD:50407   EGPC_2   liver 2-eicosatrienoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   102 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested102 strains
Mean of the strain means332024   None
Median of the strain means283158   None
SD of the strain means± 206379
Coefficient of variation (CV)0.622
Min–max range of strain means85257   –   1450031   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 19 1074939002633.38 56575736980.7042 1.0203 0.4693
Residuals 29 1608005020508.97 55448448983.0679


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 102 (102)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 511102.0 0.0   1   0.0 0.0 511102.0, 511102.0 0.87
A/J m 203251.0 126948.0   2   89766.0 0.625 113486.0, 293017.0 -0.62
AKR/J m 299208.0 0.0   1   0.0 0.0 299208.0, 299208.0 -0.16
AXB10/PgnJ m 328471.0 0.0   1   0.0 0.0 328471.0, 328471.0 -0.02
AXB13/PgnJ m 146277.0 0.0   1   0.0 0.0 146277.0, 146277.0 -0.9
AXB19a/PgnJ m 332298.0 0.0   1   0.0 0.0 332298.0, 332298.0 0.0
AXB19b/PgnJ m 490772.0 105682.0   2   74728.0 0.215 416044.0, 565501.0 0.77
AXB19/PgnJ m 379866.0 0.0   1   0.0 0.0 379866.0, 379866.0 0.23
AXB1/PgnJ m 723587.0 0.0   1   0.0 0.0 723587.0, 723587.0 1.9
AXB23/PgnJ m 387800.0 0.0   1   0.0 0.0 387800.0, 387800.0 0.27
AXB24/PgnJ m 278325.0 211495.0   2   149550.0 0.76 128775.0, 427875.0 -0.26
AXB2/PgnJ m 219929.0 0.0   1   0.0 0.0 219929.0, 219929.0 -0.54
AXB4/PgnJ m 258856.0 0.0   1   0.0 0.0 258856.0, 258856.0 -0.35
AXB5/PgnJ m 168601.0 0.0   1   0.0 0.0 168601.0, 168601.0 -0.79
AXB6/PgnJ m 272026.0 0.0   1   0.0 0.0 272026.0, 272026.0 -0.29
AXB8/PgnJ m 212700.0 0.0   1   0.0 0.0 212700.0, 212700.0 -0.58
BALB/cJ m 284472.0 75830.0   3 43781.0 0.267 235283.0, 371801.0 -0.23
BTBR T+ Itpr3tf/J m 278911.0 0.0   1   0.0 0.0 278911.0, 278911.0 -0.26
BUB/BnJ m 419683.0 0.0   1   0.0 0.0 419683.0, 419683.0 0.42
BXA11/PgnJ m 216350.0 0.0   1   0.0 0.0 216350.0, 216350.0 -0.56
BXA12/PgnJ m 131825.0 0.0   1   0.0 0.0 131825.0, 131825.0 -0.97
BXA13/PgnJ m 430065.0 0.0   1   0.0 0.0 430065.0, 430065.0 0.48
BXA14/PgnJ m 1450031.0 0.0   1   0.0 0.0 1450031.0, 1450031.0 5.42
BXA16/PgnJ m 299143.0 27842.0   2   19687.0 0.0931 279456.0, 318830.0 -0.16
BXA1/PgnJ m 322020.0 0.0   1   0.0 0.0 322020.0, 322020.0 -0.05
BXA25/PgnJ m 162906.0 0.0   1   0.0 0.0 162906.0, 162906.0 -0.82
BXA26/PgnJ m 404836.0 0.0   1   0.0 0.0 404836.0, 404836.0 0.35
BXA2/PgnJ m 213154.0 0.0   1   0.0 0.0 213154.0, 213154.0 -0.58
BXA4/PgnJ m 183403.0 0.0   1   0.0 0.0 183403.0, 183403.0 -0.72
BXA7/PgnJ m 294940.0 0.0   1   0.0 0.0 294940.0, 294940.0 -0.18
BXA8/PgnJ m 306011.0 0.0   1   0.0 0.0 306011.0, 306011.0 -0.13
BXD11/TyJ m 215395.0 0.0   1   0.0 0.0 215395.0, 215395.0 -0.57
BXD12/TyJ m 372803.0 0.0   1   0.0 0.0 372803.0, 372803.0 0.2
BXD13/TyJ m 183999.0 0.0   1   0.0 0.0 183999.0, 183999.0 -0.72
BXD14/TyJ m 486314.0 0.0   1   0.0 0.0 486314.0, 486314.0 0.75
BXD15/TyJ m 325337.0 0.0   1   0.0 0.0 325337.0, 325337.0 -0.03
BXD18/TyJ m 140863.0 0.0   1   0.0 0.0 140863.0, 140863.0 -0.93
BXD19/TyJ m 285778.0 30986.0   2   21911.0 0.108 263868.0, 307689.0 -0.22
BXD1/TyJ m 125327.0 0.0   1   0.0 0.0 125327.0, 125327.0 -1.0
BXD20/TyJ m 284719.0 0.0   1   0.0 0.0 284719.0, 284719.0 -0.23
BXD21/TyJ m 129052.0 0.0   1   0.0 0.0 129052.0, 129052.0 -0.98
BXD22/TyJ m 269585.0 0.0   1   0.0 0.0 269585.0, 269585.0 -0.3
BXD24/TyJ m 171614.0 0.0   1   0.0 0.0 171614.0, 171614.0 -0.78
BXD24/TyJ-Cep290rd16/J m 207665.0 0.0   1   0.0 0.0 207665.0, 207665.0 -0.6
BXD28/TyJ m 201084.0 7351.0   2   5198.0 0.0366 195886.0, 206282.0 -0.63
BXD29-Tlr4lps-2J/J m 281845.0 0.0   1   0.0 0.0 281845.0, 281845.0 -0.24
BXD2/TyJ m 278817.0 0.0   1   0.0 0.0 278817.0, 278817.0 -0.26
BXD32/TyJ m 92890.0 0.0   1   0.0 0.0 92890.0, 92890.0 -1.16
BXD33/TyJ m 377266.0 0.0   1   0.0 0.0 377266.0, 377266.0 0.22
BXD34/TyJ m 219414.0 0.0   1   0.0 0.0 219414.0, 219414.0 -0.55
BXD36/TyJ m 241997.0 0.0   1   0.0 0.0 241997.0, 241997.0 -0.44
BXD38/TyJ m 151563.0 0.0   1   0.0 0.0 151563.0, 151563.0 -0.87
BXD39/TyJ m 315089.0 0.0   1   0.0 0.0 315089.0, 315089.0 -0.08
BXD40/TyJ m 240246.0 0.0   1   0.0 0.0 240246.0, 240246.0 -0.44
BXD42/TyJ m 278817.0 0.0   1   0.0 0.0 278817.0, 278817.0 -0.26
BXD5/TyJ m 303532.0 0.0   1   0.0 0.0 303532.0, 303532.0 -0.14
BXD6/TyJ m 438763.0 0.0   1   0.0 0.0 438763.0, 438763.0 0.52
BXD9/TyJ m 441121.0 0.0   1   0.0 0.0 441121.0, 441121.0 0.53
BXH10/TyJ m 261446.0 0.0   1   0.0 0.0 261446.0, 261446.0 -0.34
BXH19/TyJ m 1146310.0 0.0   1   0.0 0.0 1146310.0, 1146310.0 3.95
BXH20/KccJ m 530460.0 0.0   1   0.0 0.0 530460.0, 530460.0 0.96
BXH22/KccJ m 295489.0 0.0   1   0.0 0.0 295489.0, 295489.0 -0.18
BXH2/TyJ m 348238.0 0.0   1   0.0 0.0 348238.0, 348238.0 0.08
BXH4/TyJ m 480725.0 197863.0   2   139910.0 0.412 340814.0, 620635.0 0.72
BXH6/TyJ m 530533.0 0.0   1   0.0 0.0 530533.0, 530533.0 0.96
BXH7/TyJ m 349898.0 0.0   1   0.0 0.0 349898.0, 349898.0 0.09
BXH8/TyJ m 328413.0 0.0   1   0.0 0.0 328413.0, 328413.0 -0.02
BXH9/TyJ m 244687.0 0.0   1   0.0 0.0 244687.0, 244687.0 -0.42
C3H/HeJ m 365356.0 52338.0   2   37009.0 0.143 328348.0, 402365.0 0.16
C57BL/6J m 205169.0 85952.0   5 38439.0 0.419 94124.0, 278817.0 -0.61
C57L/J m 159022.0 0.0   1   0.0 0.0 159022.0, 159022.0 -0.84
C58/J m 479350.0 0.0   1   0.0 0.0 479350.0, 479350.0 0.71
CAST/EiJ m 785391.0 0.0   1   0.0 0.0 785391.0, 785391.0 2.2
CBA/J m 248276.0 0.0   1   0.0 0.0 248276.0, 248276.0 -0.41
CE/J m 438496.0 0.0   1   0.0 0.0 438496.0, 438496.0 0.52
CXB11/HiAJ m 221830.0 0.0   1   0.0 0.0 221830.0, 221830.0 -0.53
CXB12/HiAJ m 172266.0 31778.0   2   22470.0 0.184 149795.0, 194736.0 -0.77
CXB13/HiAJ m 261400.0 206638.0   3 119302.0 0.791 112208.0, 497258.0 -0.34
CXB1/ByJ m 789335.0 785162.0   3 453314.0 0.995 258661.0, 1691278.0 2.22
CXB2/ByJ m 249634.0 43271.0   2   30597.0 0.173 219037.0, 280231.0 -0.4
CXB3/ByJ m 241865.0 45316.0   2   32043.0 0.187 209822.0, 273908.0 -0.44
CXB4/ByJ m 191502.0 75508.0   2   53392.0 0.394 138109.0, 244894.0 -0.68
CXB6/ByJ m 85257.0 0.0   1   0.0 0.0 85257.0, 85257.0 -1.2
CXB7/ByJ m 327617.0 91159.0   2   64459.0 0.278 263157.0, 392076.0 -0.02
CXB8/HiAJ m 373095.0 134410.0   3 77601.0 0.36 217964.0, 454735.0 0.2
CXB9/HiAJ m 162984.0 162911.0   2   115196.0 1.0 47788.0, 278179.0 -0.82
DBA/2J m 280122.0 130747.0   4 65373.0 0.467 137043.0, 453461.0 -0.25
FVB/NJ m 268112.0 0.0   1   0.0 0.0 268112.0, 268112.0 -0.31
I/LnJ m 391106.0 0.0   1   0.0 0.0 391106.0, 391106.0 0.29
KK/HlJ m 557618.0 0.0   1   0.0 0.0 557618.0, 557618.0 1.09
LG/J m 552932.0 0.0   1   0.0 0.0 552932.0, 552932.0 1.07
LP/J m 289416.0 0.0   1   0.0 0.0 289416.0, 289416.0 -0.21
MA/MyJ m 232897.0 0.0   1   0.0 0.0 232897.0, 232897.0 -0.48
NOD/ShiLtJ m 210350.0 0.0   1   0.0 0.0 210350.0, 210350.0 -0.59
NON/ShiLtJ m 947385.0 0.0   1   0.0 0.0 947385.0, 947385.0 2.98
NZW/LacJ m 225536.0 0.0   1   0.0 0.0 225536.0, 225536.0 -0.52
PL/J m 352013.0 0.0   1   0.0 0.0 352013.0, 352013.0 0.1
RIIIS/J m 103083.0 0.0   1   0.0 0.0 103083.0, 103083.0 -1.11
SEA/GnJ m 222355.0 0.0   1   0.0 0.0 222355.0, 222355.0 -0.53
SJL/J m 686070.0 0.0   1   0.0 0.0 686070.0, 686070.0 1.72
SM/J m 295016.0 0.0   1   0.0 0.0 295016.0, 295016.0 -0.18
SWR/J m 306668.0 0.0   1   0.0 0.0 306668.0, 306668.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 203251.25 166505.9293 543794.1122 0.0
AXB19b/PgnJ m 490772.35 166505.9293 831315.2122 150229.4878
AXB24/PgnJ m 278324.9 166505.9293 618867.7622 0.0
BALB/cJ m 284472.3333 135951.522 562524.416 6420.2507
BXA16/PgnJ m 299142.95 166505.9293 639685.8122 0.0
BXD19/TyJ m 285778.05 166505.9293 626320.9122 0.0
BXD28/TyJ m 201083.65 166505.9293 541626.5122 0.0
BXH4/TyJ m 480724.65 166505.9293 821267.5122 140181.7878
C3H/HeJ m 365356.4 166505.9293 705899.2622 24813.5378
C57BL/6J m 205168.64 105307.5961 420546.8571 0.0
CXB12/HiAJ m 172265.85 166505.9293 512808.7122 0.0
CXB13/HiAJ m 261400.1333 135951.522 539452.216 0.0
CXB1/ByJ m 789334.5333 135951.522 1067386.616 511282.4507
CXB2/ByJ m 249633.65 166505.9293 590176.5122 0.0
CXB3/ByJ m 241864.7 166505.9293 582407.5622 0.0
CXB4/ByJ m 191501.55 166505.9293 532044.4122 0.0
CXB7/ByJ m 327616.55 166505.9293 668159.4122 0.0
CXB8/HiAJ m 373095.1667 135951.522 651147.2493 95043.084
CXB9/HiAJ m 162983.5 166505.9293 503526.3622 0.0
DBA/2J m 280121.9 117737.4717 520922.0671 39321.7329




  GWAS USING LINEAR MIXED MODELS

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