Phenotype measure:   HMDPpheno9   EGPC_1

ID, description, units MPD:50406   EGPC_1   liver 1-eicosatrienoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   91 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno9 - liver 1-eicosatrienoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested91 strains
Mean of the strain means141366   None
Median of the strain means117524   None
SD of the strain means± 85976
Coefficient of variation (CV)0.608
Min–max range of strain means44986   –   539042   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 16 95091977472.5726 5943248592.0358 0.9369 0.5438
Residuals 24 152246287383.805 6343595307.6585


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 293260.0 0.0   1   0.0 0.0 293260.0, 293260.0 1.77
A/J m 67345.0 0.0   1   0.0 0.0 67345.0, 67345.0 -0.86
AKR/J m 72551.0 0.0   1   0.0 0.0 72551.0, 72551.0 -0.8
AXB10/PgnJ m 82062.0 0.0   1   0.0 0.0 82062.0, 82062.0 -0.69
AXB13/PgnJ m 95862.0 0.0   1   0.0 0.0 95862.0, 95862.0 -0.53
AXB15/PgnJ m 63258.0 0.0   1   0.0 0.0 63258.0, 63258.0 -0.91
AXB19a/PgnJ m 144446.0 0.0   1   0.0 0.0 144446.0, 144446.0 0.04
AXB19b/PgnJ m 161161.0 38141.0   2   26969.0 0.237 134192.0, 188131.0 0.23
AXB19/PgnJ m 205242.0 0.0   1   0.0 0.0 205242.0, 205242.0 0.74
AXB1/PgnJ m 347763.0 0.0   1   0.0 0.0 347763.0, 347763.0 2.4
AXB23/PgnJ m 160986.0 0.0   1   0.0 0.0 160986.0, 160986.0 0.23
AXB24/PgnJ m 223081.0 0.0   1   0.0 0.0 223081.0, 223081.0 0.95
AXB2/PgnJ m 79583.0 0.0   1   0.0 0.0 79583.0, 79583.0 -0.72
AXB5/PgnJ m 59877.0 0.0   1   0.0 0.0 59877.0, 59877.0 -0.95
AXB6/PgnJ m 95748.0 0.0   1   0.0 0.0 95748.0, 95748.0 -0.53
AXB8/PgnJ m 54724.0 0.0   1   0.0 0.0 54724.0, 54724.0 -1.01
BALB/cJ m 129809.0 11811.0   2   8351.0 0.091 121458.0, 138161.0 -0.13
BTBR T+ Itpr3tf/J m 119287.0 0.0   1   0.0 0.0 119287.0, 119287.0 -0.26
BUB/BnJ m 220260.0 0.0   1   0.0 0.0 220260.0, 220260.0 0.92
BXA11/PgnJ m 44986.0 0.0   1   0.0 0.0 44986.0, 44986.0 -1.12
BXA13/PgnJ m 228041.0 0.0   1   0.0 0.0 228041.0, 228041.0 1.01
BXA14/PgnJ m 460277.0 0.0   1   0.0 0.0 460277.0, 460277.0 3.71
BXA16/PgnJ m 106536.0 15538.0   2   10987.0 0.146 95549.0, 117524.0 -0.41
BXA1/PgnJ m 112936.0 0.0   1   0.0 0.0 112936.0, 112936.0 -0.33
BXA24/PgnJ m 59794.0 0.0   1   0.0 0.0 59794.0, 59794.0 -0.95
BXA25/PgnJ m 65274.0 0.0   1   0.0 0.0 65274.0, 65274.0 -0.89
BXA26/PgnJ m 259356.0 0.0   1   0.0 0.0 259356.0, 259356.0 1.37
BXA2/PgnJ m 117524.0 0.0   1   0.0 0.0 117524.0, 117524.0 -0.28
BXA4/PgnJ m 50907.0 0.0   1   0.0 0.0 50907.0, 50907.0 -1.05
BXA7/PgnJ m 226561.0 0.0   1   0.0 0.0 226561.0, 226561.0 0.99
BXA8/PgnJ m 135392.0 0.0   1   0.0 0.0 135392.0, 135392.0 -0.07
BXD12/TyJ m 199301.0 0.0   1   0.0 0.0 199301.0, 199301.0 0.67
BXD13/TyJ m 81991.0 0.0   1   0.0 0.0 81991.0, 81991.0 -0.69
BXD14/TyJ m 134574.0 0.0   1   0.0 0.0 134574.0, 134574.0 -0.08
BXD15/TyJ m 117524.0 0.0   1   0.0 0.0 117524.0, 117524.0 -0.28
BXD18/TyJ m 80846.0 0.0   1   0.0 0.0 80846.0, 80846.0 -0.7
BXD19/TyJ m 112747.0 14856.0   2   10505.0 0.132 102242.0, 123252.0 -0.33
BXD20/TyJ m 106672.0 0.0   1   0.0 0.0 106672.0, 106672.0 -0.4
BXD21/TyJ m 88262.0 0.0   1   0.0 0.0 88262.0, 88262.0 -0.62
BXD22/TyJ m 102634.0 0.0   1   0.0 0.0 102634.0, 102634.0 -0.45
BXD24/TyJ m 69103.0 0.0   1   0.0 0.0 69103.0, 69103.0 -0.84
BXD28/TyJ m 85136.0 5489.0   2   3882.0 0.0645 81255.0, 89018.0 -0.65
BXD29-Tlr4lps-2J/J m 104031.0 0.0   1   0.0 0.0 104031.0, 104031.0 -0.43
BXD2/TyJ m 88014.0 0.0   1   0.0 0.0 88014.0, 88014.0 -0.62
BXD32/TyJ m 62688.0 0.0   1   0.0 0.0 62688.0, 62688.0 -0.92
BXD38/TyJ m 65750.0 0.0   1   0.0 0.0 65750.0, 65750.0 -0.88
BXD39/TyJ m 136252.0 0.0   1   0.0 0.0 136252.0, 136252.0 -0.06
BXD40/TyJ m 82807.0 0.0   1   0.0 0.0 82807.0, 82807.0 -0.68
BXD42/TyJ m 101982.0 0.0   1   0.0 0.0 101982.0, 101982.0 -0.46
BXD5/TyJ m 152594.0 0.0   1   0.0 0.0 152594.0, 152594.0 0.13
BXD6/TyJ m 100316.0 0.0   1   0.0 0.0 100316.0, 100316.0 -0.48
BXD9/TyJ m 151836.0 0.0   1   0.0 0.0 151836.0, 151836.0 0.12
BXH19/TyJ m 355698.0 0.0   1   0.0 0.0 355698.0, 355698.0 2.49
BXH20/KccJ m 316375.0 0.0   1   0.0 0.0 316375.0, 316375.0 2.04
BXH22/KccJ m 121973.0 0.0   1   0.0 0.0 121973.0, 121973.0 -0.23
BXH2/TyJ m 151367.0 0.0   1   0.0 0.0 151367.0, 151367.0 0.12
BXH4/TyJ m 167933.0 93394.0   2   66040.0 0.556 101893.0, 233972.0 0.31
BXH6/TyJ m 180822.0 0.0   1   0.0 0.0 180822.0, 180822.0 0.46
BXH7/TyJ m 141469.0 0.0   1   0.0 0.0 141469.0, 141469.0 0.0
BXH8/TyJ m 131121.0 0.0   1   0.0 0.0 131121.0, 131121.0 -0.12
BXH9/TyJ m 88669.0 0.0   1   0.0 0.0 88669.0, 88669.0 -0.61
C3H/HeJ m 144735.0 80931.0   2   57227.0 0.559 87508.0, 201962.0 0.04
C57BL/6J m 98480.0 44766.0   4 22383.0 0.455 65474.0, 164281.0 -0.5
C57L/J m 65145.0 0.0   1   0.0 0.0 65145.0, 65145.0 -0.89
C58/J m 155543.0 0.0   1   0.0 0.0 155543.0, 155543.0 0.16
CAST/EiJ m 246021.0 0.0   1   0.0 0.0 246021.0, 246021.0 1.22
CBA/J m 104804.0 0.0   1   0.0 0.0 104804.0, 104804.0 -0.43
CE/J m 198172.0 0.0   1   0.0 0.0 198172.0, 198172.0 0.66
CXB11/HiAJ m 178801.0 0.0   1   0.0 0.0 178801.0, 178801.0 0.44
CXB12/HiAJ m 151606.0 0.0   1   0.0 0.0 151606.0, 151606.0 0.12
CXB13/HiAJ m 112397.0 62965.0   3 36353.0 0.56 67926.0, 184445.0 -0.34
CXB1/ByJ m 276988.0 204911.0   3 118305.0 0.74 122585.0, 509458.0 1.58
CXB2/ByJ m 105419.0 17393.0   2   12298.0 0.165 93120.0, 117717.0 -0.42
CXB3/ByJ m 138465.0 61489.0   2   43479.0 0.444 94986.0, 181945.0 -0.03
CXB4/ByJ m 97260.0 23094.0   2   16330.0 0.237 80930.0, 113590.0 -0.51
CXB6/ByJ m 66544.0 0.0   1   0.0 0.0 66544.0, 66544.0 -0.87
CXB7/ByJ m 122574.0 26062.0   2   18429.0 0.213 104145.0, 141003.0 -0.22
CXB8/HiAJ m 185123.0 88804.0   3 51271.0 0.48 87860.0, 261881.0 0.51
CXB9/HiAJ m 109048.0 77183.0   2   54576.0 0.708 54472.0, 163625.0 -0.38
DBA/2J m 109654.0 57573.0   4 28786.0 0.525 60286.0, 192487.0 -0.37
FVB/NJ m 65898.0 0.0   1   0.0 0.0 65898.0, 65898.0 -0.88
I/LnJ m 132286.0 0.0   1   0.0 0.0 132286.0, 132286.0 -0.11
KK/HlJ m 196871.0 0.0   1   0.0 0.0 196871.0, 196871.0 0.65
LG/J m 120050.0 0.0   1   0.0 0.0 120050.0, 120050.0 -0.25
LP/J m 57267.0 0.0   1   0.0 0.0 57267.0, 57267.0 -0.98
NOD/ShiLtJ m 72889.0 0.0   1   0.0 0.0 72889.0, 72889.0 -0.8
NON/ShiLtJ m 539042.0 0.0   1   0.0 0.0 539042.0, 539042.0 4.63
PL/J m 164885.0 0.0   1   0.0 0.0 164885.0, 164885.0 0.27
SEA/GnJ m 83428.0 0.0   1   0.0 0.0 83428.0, 83428.0 -0.67
SJL/J m 209613.0 0.0   1   0.0 0.0 209613.0, 209613.0 0.79
SWR/J m 130902.0 0.0   1   0.0 0.0 130902.0, 130902.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB19b/PgnJ m 161161.15 56318.715 277397.2648 44925.0352
BALB/cJ m 129809.25 56318.715 246045.3648 13573.1352
BXA16/PgnJ m 106536.5 56318.715 222772.6148 0.0
BXD19/TyJ m 112747.3 56318.715 228983.4148 0.0
BXD28/TyJ m 85136.25 56318.715 201372.3648 0.0
BXH4/TyJ m 167932.8 56318.715 284168.9148 51696.6852
C3H/HeJ m 144735.45 56318.715 260971.5648 28499.3352
C57BL/6J m 98479.8 39823.3453 180671.145 16288.455
CXB13/HiAJ m 112397.1333 45984.0382 207303.5236 17490.743
CXB1/ByJ m 276987.8667 45984.0382 371894.257 182081.4764
CXB2/ByJ m 105418.6 56318.715 221654.7148 0.0
CXB3/ByJ m 138465.4 56318.715 254701.5148 22229.2852
CXB4/ByJ m 97259.8 56318.715 213495.9148 0.0
CXB7/ByJ m 122574.1 56318.715 238810.2148 6337.9852
CXB8/HiAJ m 185122.8667 45984.0382 280029.257 90216.4764
CXB9/HiAJ m 109048.35 56318.715 225284.4648 0.0
DBA/2J m 109654.0 39823.3453 191845.345 27462.655




  GWAS USING LINEAR MIXED MODELS