Project measure / variable:   HMDPpheno9   EGPC_1

ID, description, units MPD:50406   EGPC_1   liver 1-eicosatrienoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   91 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 1-eicosatrienoylglycerophosphocholine (16h fast), relative abundance

NON/ShiLtJBXA14/PgnJBXH19/TyJAXB1/PgnJBXH20/KccJ129X1/SvJCXB1/ByJBXA26/PgnJCAST/EiJBXA13/PgnJBXA7/PgnJAXB24/PgnJBUB/BnJSJL/JAXB19/PgnJBXD12/TyJCE/JKK/HlJCXB8/HiAJBXH6/TyJCXB11/HiAJBXH4/TyJPL/JAXB19b/PgnJAXB23/PgnJC58/JBXD5/TyJBXD9/TyJCXB12/HiAJBXH2/TyJC3H/HeJAXB19a/PgnJBXH7/TyJCXB3/ByJBXD39/TyJBXA8/PgnJBXD14/TyJI/LnJBXH8/TyJSWR/JBALB/cJCXB7/ByJBXH22/KccJLG/JBTBR T<+> Itpr3<tf>/JBXD15/TyJBXA2/PgnJBXA1/PgnJBXD19/TyJCXB13/HiAJDBA/2JCXB9/HiAJBXD20/TyJBXA16/PgnJCXB2/ByJCBA/JBXD29-Tlr4<lps-2J>/JBXD22/TyJBXD42/TyJBXD6/TyJC57BL/6JCXB4/ByJAXB13/PgnJAXB6/PgnJBXH9/TyJBXD21/TyJBXD2/TyJBXD28/TyJSEA/GnJBXD40/TyJAXB10/PgnJBXD13/TyJBXD18/TyJAXB2/PgnJNOD/ShiLtJAKR/JBXD24/TyJA/JCXB6/ByJFVB/NJBXD38/TyJBXA25/PgnJC57L/JAXB15/PgnJBXD32/TyJAXB5/PgnJBXA24/PgnJLP/JAXB8/PgnJBXA4/PgnJBXA11/PgnJ (no units) 50,000100,000150,000200,000250,000300,000350,000400,000450,000500,000550,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested91 strains
Mean of the strain means141366   None
Median of the strain means117524   None
SD of the strain means± 85976
Coefficient of variation (CV)0.608
Min–max range of strain means44986   –   539042   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 16 95091977472.5726 5943248592.0358 0.9369 0.5438
Residuals 24 152246287383.805 6343595307.6585


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 91 (91)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 293260.0 0.0   1   0.0 0.0 293260.0, 293260.0 1.77
A/J m 67345.0 0.0   1   0.0 0.0 67345.0, 67345.0 -0.86
AKR/J m 72551.0 0.0   1   0.0 0.0 72551.0, 72551.0 -0.8
AXB10/PgnJ m 82062.0 0.0   1   0.0 0.0 82062.0, 82062.0 -0.69
AXB13/PgnJ m 95862.0 0.0   1   0.0 0.0 95862.0, 95862.0 -0.53
AXB15/PgnJ m 63258.0 0.0   1   0.0 0.0 63258.0, 63258.0 -0.91
AXB19a/PgnJ m 144446.0 0.0   1   0.0 0.0 144446.0, 144446.0 0.04
AXB19b/PgnJ m 161161.0 38141.0   2   26969.0 0.237 134192.0, 188131.0 0.23
AXB19/PgnJ m 205242.0 0.0   1   0.0 0.0 205242.0, 205242.0 0.74
AXB1/PgnJ m 347763.0 0.0   1   0.0 0.0 347763.0, 347763.0 2.4
AXB23/PgnJ m 160986.0 0.0   1   0.0 0.0 160986.0, 160986.0 0.23
AXB24/PgnJ m 223081.0 0.0   1   0.0 0.0 223081.0, 223081.0 0.95
AXB2/PgnJ m 79583.0 0.0   1   0.0 0.0 79583.0, 79583.0 -0.72
AXB5/PgnJ m 59877.0 0.0   1   0.0 0.0 59877.0, 59877.0 -0.95
AXB6/PgnJ m 95748.0 0.0   1   0.0 0.0 95748.0, 95748.0 -0.53
AXB8/PgnJ m 54724.0 0.0   1   0.0 0.0 54724.0, 54724.0 -1.01
BALB/cJ m 129809.0 11811.0   2   8351.0 0.091 121458.0, 138161.0 -0.13
BTBR T+ Itpr3tf/J m 119287.0 0.0   1   0.0 0.0 119287.0, 119287.0 -0.26
BUB/BnJ m 220260.0 0.0   1   0.0 0.0 220260.0, 220260.0 0.92
BXA11/PgnJ m 44986.0 0.0   1   0.0 0.0 44986.0, 44986.0 -1.12
BXA13/PgnJ m 228041.0 0.0   1   0.0 0.0 228041.0, 228041.0 1.01
BXA14/PgnJ m 460277.0 0.0   1   0.0 0.0 460277.0, 460277.0 3.71
BXA16/PgnJ m 106536.0 15538.0   2   10987.0 0.146 95549.0, 117524.0 -0.41
BXA1/PgnJ m 112936.0 0.0   1   0.0 0.0 112936.0, 112936.0 -0.33
BXA24/PgnJ m 59794.0 0.0   1   0.0 0.0 59794.0, 59794.0 -0.95
BXA25/PgnJ m 65274.0 0.0   1   0.0 0.0 65274.0, 65274.0 -0.89
BXA26/PgnJ m 259356.0 0.0   1   0.0 0.0 259356.0, 259356.0 1.37
BXA2/PgnJ m 117524.0 0.0   1   0.0 0.0 117524.0, 117524.0 -0.28
BXA4/PgnJ m 50907.0 0.0   1   0.0 0.0 50907.0, 50907.0 -1.05
BXA7/PgnJ m 226561.0 0.0   1   0.0 0.0 226561.0, 226561.0 0.99
BXA8/PgnJ m 135392.0 0.0   1   0.0 0.0 135392.0, 135392.0 -0.07
BXD12/TyJ m 199301.0 0.0   1   0.0 0.0 199301.0, 199301.0 0.67
BXD13/TyJ m 81991.0 0.0   1   0.0 0.0 81991.0, 81991.0 -0.69
BXD14/TyJ m 134574.0 0.0   1   0.0 0.0 134574.0, 134574.0 -0.08
BXD15/TyJ m 117524.0 0.0   1   0.0 0.0 117524.0, 117524.0 -0.28
BXD18/TyJ m 80846.0 0.0   1   0.0 0.0 80846.0, 80846.0 -0.7
BXD19/TyJ m 112747.0 14856.0   2   10505.0 0.132 102242.0, 123252.0 -0.33
BXD20/TyJ m 106672.0 0.0   1   0.0 0.0 106672.0, 106672.0 -0.4
BXD21/TyJ m 88262.0 0.0   1   0.0 0.0 88262.0, 88262.0 -0.62
BXD22/TyJ m 102634.0 0.0   1   0.0 0.0 102634.0, 102634.0 -0.45
BXD24/TyJ m 69103.0 0.0   1   0.0 0.0 69103.0, 69103.0 -0.84
BXD28/TyJ m 85136.0 5489.0   2   3882.0 0.0645 81255.0, 89018.0 -0.65
BXD29-Tlr4lps-2J/J m 104031.0 0.0   1   0.0 0.0 104031.0, 104031.0 -0.43
BXD2/TyJ m 88014.0 0.0   1   0.0 0.0 88014.0, 88014.0 -0.62
BXD32/TyJ m 62688.0 0.0   1   0.0 0.0 62688.0, 62688.0 -0.92
BXD38/TyJ m 65750.0 0.0   1   0.0 0.0 65750.0, 65750.0 -0.88
BXD39/TyJ m 136252.0 0.0   1   0.0 0.0 136252.0, 136252.0 -0.06
BXD40/TyJ m 82807.0 0.0   1   0.0 0.0 82807.0, 82807.0 -0.68
BXD42/TyJ m 101982.0 0.0   1   0.0 0.0 101982.0, 101982.0 -0.46
BXD5/TyJ m 152594.0 0.0   1   0.0 0.0 152594.0, 152594.0 0.13
BXD6/TyJ m 100316.0 0.0   1   0.0 0.0 100316.0, 100316.0 -0.48
BXD9/TyJ m 151836.0 0.0   1   0.0 0.0 151836.0, 151836.0 0.12
BXH19/TyJ m 355698.0 0.0   1   0.0 0.0 355698.0, 355698.0 2.49
BXH20/KccJ m 316375.0 0.0   1   0.0 0.0 316375.0, 316375.0 2.04
BXH22/KccJ m 121973.0 0.0   1   0.0 0.0 121973.0, 121973.0 -0.23
BXH2/TyJ m 151367.0 0.0   1   0.0 0.0 151367.0, 151367.0 0.12
BXH4/TyJ m 167933.0 93394.0   2   66040.0 0.556 101893.0, 233972.0 0.31
BXH6/TyJ m 180822.0 0.0   1   0.0 0.0 180822.0, 180822.0 0.46
BXH7/TyJ m 141469.0 0.0   1   0.0 0.0 141469.0, 141469.0 0.0
BXH8/TyJ m 131121.0 0.0   1   0.0 0.0 131121.0, 131121.0 -0.12
BXH9/TyJ m 88669.0 0.0   1   0.0 0.0 88669.0, 88669.0 -0.61
C3H/HeJ m 144735.0 80931.0   2   57227.0 0.559 87508.0, 201962.0 0.04
C57BL/6J m 98480.0 44766.0   4 22383.0 0.455 65474.0, 164281.0 -0.5
C57L/J m 65145.0 0.0   1   0.0 0.0 65145.0, 65145.0 -0.89
C58/J m 155543.0 0.0   1   0.0 0.0 155543.0, 155543.0 0.16
CAST/EiJ m 246021.0 0.0   1   0.0 0.0 246021.0, 246021.0 1.22
CBA/J m 104804.0 0.0   1   0.0 0.0 104804.0, 104804.0 -0.43
CE/J m 198172.0 0.0   1   0.0 0.0 198172.0, 198172.0 0.66
CXB11/HiAJ m 178801.0 0.0   1   0.0 0.0 178801.0, 178801.0 0.44
CXB12/HiAJ m 151606.0 0.0   1   0.0 0.0 151606.0, 151606.0 0.12
CXB13/HiAJ m 112397.0 62965.0   3 36353.0 0.56 67926.0, 184445.0 -0.34
CXB1/ByJ m 276988.0 204911.0   3 118305.0 0.74 122585.0, 509458.0 1.58
CXB2/ByJ m 105419.0 17393.0   2   12298.0 0.165 93120.0, 117717.0 -0.42
CXB3/ByJ m 138465.0 61489.0   2   43479.0 0.444 94986.0, 181945.0 -0.03
CXB4/ByJ m 97260.0 23094.0   2   16330.0 0.237 80930.0, 113590.0 -0.51
CXB6/ByJ m 66544.0 0.0   1   0.0 0.0 66544.0, 66544.0 -0.87
CXB7/ByJ m 122574.0 26062.0   2   18429.0 0.213 104145.0, 141003.0 -0.22
CXB8/HiAJ m 185123.0 88804.0   3 51271.0 0.48 87860.0, 261881.0 0.51
CXB9/HiAJ m 109048.0 77183.0   2   54576.0 0.708 54472.0, 163625.0 -0.38
DBA/2J m 109654.0 57573.0   4 28786.0 0.525 60286.0, 192487.0 -0.37
FVB/NJ m 65898.0 0.0   1   0.0 0.0 65898.0, 65898.0 -0.88
I/LnJ m 132286.0 0.0   1   0.0 0.0 132286.0, 132286.0 -0.11
KK/HlJ m 196871.0 0.0   1   0.0 0.0 196871.0, 196871.0 0.65
LG/J m 120050.0 0.0   1   0.0 0.0 120050.0, 120050.0 -0.25
LP/J m 57267.0 0.0   1   0.0 0.0 57267.0, 57267.0 -0.98
NOD/ShiLtJ m 72889.0 0.0   1   0.0 0.0 72889.0, 72889.0 -0.8
NON/ShiLtJ m 539042.0 0.0   1   0.0 0.0 539042.0, 539042.0 4.63
PL/J m 164885.0 0.0   1   0.0 0.0 164885.0, 164885.0 0.27
SEA/GnJ m 83428.0 0.0   1   0.0 0.0 83428.0, 83428.0 -0.67
SJL/J m 209613.0 0.0   1   0.0 0.0 209613.0, 209613.0 0.79
SWR/J m 130902.0 0.0   1   0.0 0.0 130902.0, 130902.0 -0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB19b/PgnJ m 161161.15 56318.715 277397.2648 44925.0352
BALB/cJ m 129809.25 56318.715 246045.3648 13573.1352
BXA16/PgnJ m 106536.5 56318.715 222772.6148 0.0
BXD19/TyJ m 112747.3 56318.715 228983.4148 0.0
BXD28/TyJ m 85136.25 56318.715 201372.3648 0.0
BXH4/TyJ m 167932.8 56318.715 284168.9148 51696.6852
C3H/HeJ m 144735.45 56318.715 260971.5648 28499.3352
C57BL/6J m 98479.8 39823.3453 180671.145 16288.455
CXB13/HiAJ m 112397.1333 45984.0382 207303.5236 17490.743
CXB1/ByJ m 276987.8667 45984.0382 371894.257 182081.4764
CXB2/ByJ m 105418.6 56318.715 221654.7148 0.0
CXB3/ByJ m 138465.4 56318.715 254701.5148 22229.2852
CXB4/ByJ m 97259.8 56318.715 213495.9148 0.0
CXB7/ByJ m 122574.1 56318.715 238810.2148 6337.9852
CXB8/HiAJ m 185122.8667 45984.0382 280029.257 90216.4764
CXB9/HiAJ m 109048.35 56318.715 225284.4648 0.0
DBA/2J m 109654.0 39823.3453 191845.345 27462.655




  GWAS USING LINEAR MIXED MODELS

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