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Project measure / variable:   HMDPpheno9   DPGPC

ID, description, units MPD:50404   DPGPC   liver 2-docosapentaenoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   94 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-docosapentaenoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested94 strains
Mean of the strain means126520   None
Median of the strain means111634   None
SD of the strain means± 69140
Coefficient of variation (CV)0.546
Min–max range of strain means32422   –   422163   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 17 136938762364.479 8055221315.5576 1.6734 0.1274
Residuals 22 105901039869.685 4813683630.4402


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 214909.0 0.0   1   0.0 0.0 214909.0, 214909.0 1.28
A/J m 60870.0 52354.0   2   37020.0 0.86 23850.0, 97891.0 -0.95
AXB10/PgnJ m 96658.0 0.0   1   0.0 0.0 96658.0, 96658.0 -0.43
AXB13/PgnJ m 89164.0 0.0   1   0.0 0.0 89164.0, 89164.0 -0.54
AXB15/PgnJ m 66028.0 0.0   1   0.0 0.0 66028.0, 66028.0 -0.87
AXB19a/PgnJ m 152566.0 0.0   1   0.0 0.0 152566.0, 152566.0 0.38
AXB19b/PgnJ m 251977.0 51704.0   2   36560.0 0.205 215416.0, 288537.0 1.81
AXB19/PgnJ m 269429.0 0.0   1   0.0 0.0 269429.0, 269429.0 2.07
AXB1/PgnJ m 287690.0 0.0   1   0.0 0.0 287690.0, 287690.0 2.33
AXB23/PgnJ m 129226.0 0.0   1   0.0 0.0 129226.0, 129226.0 0.04
AXB24/PgnJ m 141468.0 0.0   1   0.0 0.0 141468.0, 141468.0 0.22
AXB2/PgnJ m 126658.0 0.0   1   0.0 0.0 126658.0, 126658.0 0.0
AXB4/PgnJ m 204036.0 0.0   1   0.0 0.0 204036.0, 204036.0 1.12
AXB5/PgnJ m 67422.0 0.0   1   0.0 0.0 67422.0, 67422.0 -0.85
AXB6/PgnJ m 124773.0 0.0   1   0.0 0.0 124773.0, 124773.0 -0.03
BALB/cJ m 57673.0 29955.0   3 17294.0 0.519 36148.0, 91883.0 -1.0
BUB/BnJ m 110766.0 0.0   1   0.0 0.0 110766.0, 110766.0 -0.23
BXA11/PgnJ m 74293.0 0.0   1   0.0 0.0 74293.0, 74293.0 -0.76
BXA12/PgnJ m 50682.0 0.0   1   0.0 0.0 50682.0, 50682.0 -1.1
BXA13/PgnJ m 128300.0 0.0   1   0.0 0.0 128300.0, 128300.0 0.03
BXA14/PgnJ m 422163.0 0.0   1   0.0 0.0 422163.0, 422163.0 4.28
BXA16/PgnJ m 63175.0 19395.0   2   13715.0 0.307 49461.0, 76890.0 -0.92
BXA1/PgnJ m 72945.0 0.0   1   0.0 0.0 72945.0, 72945.0 -0.77
BXA24/PgnJ m 105213.0 0.0   1   0.0 0.0 105213.0, 105213.0 -0.31
BXA25/PgnJ m 67205.0 0.0   1   0.0 0.0 67205.0, 67205.0 -0.86
BXA26/PgnJ m 190308.0 0.0   1   0.0 0.0 190308.0, 190308.0 0.92
BXA2/PgnJ m 114092.0 0.0   1   0.0 0.0 114092.0, 114092.0 -0.18
BXA4/PgnJ m 32422.0 0.0   1   0.0 0.0 32422.0, 32422.0 -1.36
BXA7/PgnJ m 168485.0 0.0   1   0.0 0.0 168485.0, 168485.0 0.61
BXA8/PgnJ m 120426.0 0.0   1   0.0 0.0 120426.0, 120426.0 -0.09
BXD12/TyJ m 156294.0 0.0   1   0.0 0.0 156294.0, 156294.0 0.43
BXD13/TyJ m 55295.0 0.0   1   0.0 0.0 55295.0, 55295.0 -1.03
BXD14/TyJ m 169819.0 0.0   1   0.0 0.0 169819.0, 169819.0 0.63
BXD15/TyJ m 56600.0 0.0   1   0.0 0.0 56600.0, 56600.0 -1.01
BXD18/TyJ m 64408.0 0.0   1   0.0 0.0 64408.0, 64408.0 -0.9
BXD19/TyJ m 121843.0 17062.0   2   12065.0 0.14 109778.0, 133908.0 -0.07
BXD1/TyJ m 109778.0 0.0   1   0.0 0.0 109778.0, 109778.0 -0.24
BXD20/TyJ m 103188.0 0.0   1   0.0 0.0 103188.0, 103188.0 -0.34
BXD22/TyJ m 106544.0 0.0   1   0.0 0.0 106544.0, 106544.0 -0.29
BXD24/TyJ m 38998.0 0.0   1   0.0 0.0 38998.0, 38998.0 -1.27
BXD28/TyJ m 73076.0 17470.0   2   12353.0 0.239 60723.0, 85429.0 -0.77
BXD29-Tlr4lps-2J/J m 101643.0 0.0   1   0.0 0.0 101643.0, 101643.0 -0.36
BXD2/TyJ m 72939.0 0.0   1   0.0 0.0 72939.0, 72939.0 -0.77
BXD32/TyJ m 64667.0 0.0   1   0.0 0.0 64667.0, 64667.0 -0.89
BXD33/TyJ m 140886.0 0.0   1   0.0 0.0 140886.0, 140886.0 0.21
BXD34/TyJ m 84128.0 0.0   1   0.0 0.0 84128.0, 84128.0 -0.61
BXD38/TyJ m 71946.0 0.0   1   0.0 0.0 71946.0, 71946.0 -0.79
BXD39/TyJ m 112501.0 0.0   1   0.0 0.0 112501.0, 112501.0 -0.2
BXD40/TyJ m 119821.0 0.0   1   0.0 0.0 119821.0, 119821.0 -0.1
BXD42/TyJ m 79028.0 0.0   1   0.0 0.0 79028.0, 79028.0 -0.69
BXD5/TyJ m 129614.0 0.0   1   0.0 0.0 129614.0, 129614.0 0.04
BXD6/TyJ m 126888.0 0.0   1   0.0 0.0 126888.0, 126888.0 0.01
BXD9/TyJ m 134065.0 0.0   1   0.0 0.0 134065.0, 134065.0 0.11
BXH10/TyJ m 151045.0 0.0   1   0.0 0.0 151045.0, 151045.0 0.35
BXH19/TyJ m 314767.0 0.0   1   0.0 0.0 314767.0, 314767.0 2.72
BXH20/KccJ m 147041.0 0.0   1   0.0 0.0 147041.0, 147041.0 0.3
BXH22/KccJ m 109778.0 0.0   1   0.0 0.0 109778.0, 109778.0 -0.24
BXH2/TyJ m 154640.0 0.0   1   0.0 0.0 154640.0, 154640.0 0.41
BXH4/TyJ m 116582.0 43530.0   2   30781.0 0.373 85802.0, 147363.0 -0.14
BXH6/TyJ m 156727.0 0.0   1   0.0 0.0 156727.0, 156727.0 0.44
BXH7/TyJ m 126573.0 0.0   1   0.0 0.0 126573.0, 126573.0 0.0
BXH8/TyJ m 109778.0 0.0   1   0.0 0.0 109778.0, 109778.0 -0.24
BXH9/TyJ m 68156.0 0.0   1   0.0 0.0 68156.0, 68156.0 -0.84
C3H/HeJ m 103202.0 63310.0   2   44767.0 0.613 58435.0, 147968.0 -0.34
C57BL/6J m 69956.0 4359.0   2   3082.0 0.0623 66874.0, 73039.0 -0.82
C58/J m 258323.0 0.0   1   0.0 0.0 258323.0, 258323.0 1.91
CAST/EiJ m 240593.0 0.0   1   0.0 0.0 240593.0, 240593.0 1.65
CBA/J m 98601.0 0.0   1   0.0 0.0 98601.0, 98601.0 -0.4
CE/J m 98342.0 0.0   1   0.0 0.0 98342.0, 98342.0 -0.41
CXB12/HiAJ m 105921.0 43546.0   2   30792.0 0.411 75130.0, 136713.0 -0.3
CXB13/HiAJ m 135457.0 72298.0   2   51122.0 0.534 84335.0, 186580.0 0.13
CXB1/ByJ m 249813.0 164116.0   3 94752.0 0.657 126739.0, 436144.0 1.78
CXB2/ByJ m 152672.0 0.0   1   0.0 0.0 152672.0, 152672.0 0.38
CXB3/ByJ m 137192.0 78429.0   2   55458.0 0.572 81734.0, 192650.0 0.15
CXB4/ByJ m 70672.0 0.0   1   0.0 0.0 70672.0, 70672.0 -0.81
CXB6/ByJ m 58710.0 30647.0   2   21671.0 0.522 37040.0, 80381.0 -0.98
CXB7/ByJ m 92433.0 20679.0   2   14622.0 0.224 77811.0, 107055.0 -0.49
CXB8/HiAJ m 159829.0 76855.0   3 44372.0 0.481 111434.0, 248448.0 0.48
CXB9/HiAJ m 95373.0 57232.0   2   40469.0 0.6 54904.0, 135842.0 -0.45
DBA/2J m 123792.0 64030.0   3 36968.0 0.517 70740.0, 194916.0 -0.04
FVB/NJ m 63031.0 0.0   1   0.0 0.0 63031.0, 63031.0 -0.92
I/LnJ m 148433.0 0.0   1   0.0 0.0 148433.0, 148433.0 0.32
KK/HlJ m 148537.0 0.0   1   0.0 0.0 148537.0, 148537.0 0.32
LG/J m 223879.0 0.0   1   0.0 0.0 223879.0, 223879.0 1.41
LP/J m 66154.0 0.0   1   0.0 0.0 66154.0, 66154.0 -0.87
MA/MyJ m 56585.0 0.0   1   0.0 0.0 56585.0, 56585.0 -1.01
NOD/ShiLtJ m 121873.0 0.0   1   0.0 0.0 121873.0, 121873.0 -0.07
NON/ShiLtJ m 310747.0 0.0   1   0.0 0.0 310747.0, 310747.0 2.66
PL/J m 120576.0 0.0   1   0.0 0.0 120576.0, 120576.0 -0.09
RIIIS/J m 50880.0 0.0   1   0.0 0.0 50880.0, 50880.0 -1.09
SEA/GnJ m 94259.0 0.0   1   0.0 0.0 94259.0, 94259.0 -0.47
SJL/J m 238903.0 0.0   1   0.0 0.0 238903.0, 238903.0 1.63
SM/J m 104936.0 0.0   1   0.0 0.0 104936.0, 104936.0 -0.31
SWR/J m 83125.0 0.0   1   0.0 0.0 83125.0, 83125.0 -0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 60870.5 49059.5741 162613.8295 0.0
AXB19b/PgnJ m 251976.75 49059.5741 353720.0795 150233.4205
BALB/cJ m 57673.4333 40056.9746 140746.514 0.0
BXA16/PgnJ m 63175.45 49059.5741 164918.7795 0.0
BXD19/TyJ m 121842.95 49059.5741 223586.2795 20099.6205
BXD28/TyJ m 73076.1 49059.5741 174819.4295 0.0
BXH4/TyJ m 116582.3 49059.5741 218325.6295 14838.9705
C3H/HeJ m 103201.9 49059.5741 204945.2295 1458.5705
C57BL/6J m 69956.1 49059.5741 171699.4295 0.0
CXB12/HiAJ m 105921.4 49059.5741 207664.7295 4178.0705
CXB13/HiAJ m 135457.3 49059.5741 237200.6295 33713.9705
CXB1/ByJ m 249812.8 40056.9746 332885.8807 166739.7193
CXB3/ByJ m 137192.3 49059.5741 238935.6295 35448.9705
CXB6/ByJ m 58710.25 49059.5741 160453.5795 0.0
CXB7/ByJ m 92432.8 49059.5741 194176.1295 0.0
CXB8/HiAJ m 159829.4333 40056.9746 242902.514 76756.3526
CXB9/HiAJ m 95372.55 49059.5741 197115.8795 0.0
DBA/2J m 123792.1667 40056.9746 206865.2474 40719.086




  GWAS USING LINEAR MIXED MODELS