Phenotype measure:   HMDPpheno9   DHGPC

ID, description, units MPD:50402   DHGPC   liver 2-docosahexaenoylglycerophosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno9   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-docosahexaenoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means1614744   None
Median of the strain means1180356   None
SD of the strain means± 1246109
Coefficient of variation (CV)0.772
Min–max range of strain means265230   –   6983572   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 18 34052349901919.2 1891797216773.29 2.2524 0.0288
Residuals 26 21837398464996.0 839899940961.385


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 3038028.0 0.0   1   0.0 0.0 3038028.0, 3038028.0 1.14
A/J m 979379.0 1130091.0   2   799095.0 1.15 180284.0, 1778474.0 -0.51
AKR/J m 460445.0 0.0   1   0.0 0.0 460445.0, 460445.0 -0.93
AXB10/PgnJ m 980498.0 0.0   1   0.0 0.0 980498.0, 980498.0 -0.51
AXB12/PgnJ m 506224.0 0.0   1   0.0 0.0 506224.0, 506224.0 -0.89
AXB13/PgnJ m 544622.0 0.0   1   0.0 0.0 544622.0, 544622.0 -0.86
AXB19a/PgnJ m 2092125.0 0.0   1   0.0 0.0 2092125.0, 2092125.0 0.38
AXB19b/PgnJ m 4528588.0 2018194.0   2   1427079.0 0.446 3101510.0, 5955667.0 2.34
AXB19/PgnJ m 3160613.0 0.0   1   0.0 0.0 3160613.0, 3160613.0 1.24
AXB1/PgnJ m 4757276.0 0.0   1   0.0 0.0 4757276.0, 4757276.0 2.52
AXB23/PgnJ m 538481.0 0.0   1   0.0 0.0 538481.0, 538481.0 -0.86
AXB24/PgnJ m 1075568.0 1129710.0   2   798826.0 1.05 276742.0, 1874394.0 -0.43
AXB2/PgnJ m 985604.0 0.0   1   0.0 0.0 985604.0, 985604.0 -0.5
AXB4/PgnJ m 1743022.0 0.0   1   0.0 0.0 1743022.0, 1743022.0 0.1
AXB5/PgnJ m 637510.0 0.0   1   0.0 0.0 637510.0, 637510.0 -0.78
AXB6/PgnJ m 1291429.0 0.0   1   0.0 0.0 1291429.0, 1291429.0 -0.26
AXB8/PgnJ m 557924.0 0.0   1   0.0 0.0 557924.0, 557924.0 -0.85
BALB/cJ m 951996.0 414521.0   3 239324.0 0.435 581085.0, 1399457.0 -0.53
BTBR T+ Itpr3tf/J m 1314503.0 0.0   1   0.0 0.0 1314503.0, 1314503.0 -0.24
BUB/BnJ m 1530036.0 0.0   1   0.0 0.0 1530036.0, 1530036.0 -0.07
BXA11/PgnJ m 534626.0 0.0   1   0.0 0.0 534626.0, 534626.0 -0.87
BXA12/PgnJ m 864249.0 0.0   1   0.0 0.0 864249.0, 864249.0 -0.6
BXA13/PgnJ m 2454429.0 0.0   1   0.0 0.0 2454429.0, 2454429.0 0.67
BXA14/PgnJ m 5276936.0 0.0   1   0.0 0.0 5276936.0, 5276936.0 2.94
BXA16/PgnJ m 876838.0 284095.0   2   200886.0 0.324 675952.0, 1077724.0 -0.59
BXA1/PgnJ m 881277.0 0.0   1   0.0 0.0 881277.0, 881277.0 -0.59
BXA24/PgnJ m 1834243.0 0.0   1   0.0 0.0 1834243.0, 1834243.0 0.18
BXA25/PgnJ m 580196.0 0.0   1   0.0 0.0 580196.0, 580196.0 -0.83
BXA26/PgnJ m 1803126.0 0.0   1   0.0 0.0 1803126.0, 1803126.0 0.15
BXA2/PgnJ m 1441418.0 0.0   1   0.0 0.0 1441418.0, 1441418.0 -0.14
BXA4/PgnJ m 876786.0 0.0   1   0.0 0.0 876786.0, 876786.0 -0.59
BXA7/PgnJ m 1215028.0 0.0   1   0.0 0.0 1215028.0, 1215028.0 -0.32
BXA8/PgnJ m 1111417.0 0.0   1   0.0 0.0 1111417.0, 1111417.0 -0.4
BXD11/TyJ m 605026.0 0.0   1   0.0 0.0 605026.0, 605026.0 -0.81
BXD12/TyJ m 4076258.0 0.0   1   0.0 0.0 4076258.0, 4076258.0 1.98
BXD13/TyJ m 802673.0 0.0   1   0.0 0.0 802673.0, 802673.0 -0.65
BXD14/TyJ m 3115960.0 0.0   1   0.0 0.0 3115960.0, 3115960.0 1.2
BXD15/TyJ m 1715864.0 0.0   1   0.0 0.0 1715864.0, 1715864.0 0.08
BXD18/TyJ m 420685.0 0.0   1   0.0 0.0 420685.0, 420685.0 -0.96
BXD19/TyJ m 1170653.0 124037.0   2   87707.0 0.106 1082946.0, 1258360.0 -0.36
BXD1/TyJ m 1098838.0 0.0   1   0.0 0.0 1098838.0, 1098838.0 -0.41
BXD20/TyJ m 1653549.0 0.0   1   0.0 0.0 1653549.0, 1653549.0 0.03
BXD21/TyJ m 301413.0 0.0   1   0.0 0.0 301413.0, 301413.0 -1.05
BXD22/TyJ m 1721055.0 0.0   1   0.0 0.0 1721055.0, 1721055.0 0.09
BXD24/TyJ m 853577.0 0.0   1   0.0 0.0 853577.0, 853577.0 -0.61
BXD24/TyJ-Cep290rd16/J m 1266943.0 0.0   1   0.0 0.0 1266943.0, 1266943.0 -0.28
BXD28/TyJ m 784727.0 184630.0   2   130553.0 0.235 654173.0, 915280.0 -0.67
BXD29-Tlr4lps-2J/J m 1006102.0 0.0   1   0.0 0.0 1006102.0, 1006102.0 -0.49
BXD2/TyJ m 1171696.0 0.0   1   0.0 0.0 1171696.0, 1171696.0 -0.36
BXD32/TyJ m 448917.0 0.0   1   0.0 0.0 448917.0, 448917.0 -0.94
BXD33/TyJ m 3004140.0 0.0   1   0.0 0.0 3004140.0, 3004140.0 1.11
BXD34/TyJ m 781156.0 0.0   1   0.0 0.0 781156.0, 781156.0 -0.67
BXD36/TyJ m 553668.0 0.0   1   0.0 0.0 553668.0, 553668.0 -0.85
BXD38/TyJ m 814883.0 0.0   1   0.0 0.0 814883.0, 814883.0 -0.64
BXD39/TyJ m 1436515.0 0.0   1   0.0 0.0 1436515.0, 1436515.0 -0.14
BXD40/TyJ m 882572.0 0.0   1   0.0 0.0 882572.0, 882572.0 -0.59
BXD42/TyJ m 1880513.0 0.0   1   0.0 0.0 1880513.0, 1880513.0 0.21
BXD5/TyJ m 1558727.0 0.0   1   0.0 0.0 1558727.0, 1558727.0 -0.04
BXD6/TyJ m 2338177.0 0.0   1   0.0 0.0 2338177.0, 2338177.0 0.58
BXD8/TyJ m 338028.0 0.0   1   0.0 0.0 338028.0, 338028.0 -1.02
BXD9/TyJ m 1780446.0 0.0   1   0.0 0.0 1780446.0, 1780446.0 0.13
BXH10/TyJ m 1473067.0 0.0   1   0.0 0.0 1473067.0, 1473067.0 -0.11
BXH19/TyJ m 6983572.0 0.0   1   0.0 0.0 6983572.0, 6983572.0 4.31
BXH20/KccJ m 2006355.0 0.0   1   0.0 0.0 2006355.0, 2006355.0 0.31
BXH22/KccJ m 1187582.0 0.0   1   0.0 0.0 1187582.0, 1187582.0 -0.34
BXH2/TyJ m 2167482.0 0.0   1   0.0 0.0 2167482.0, 2167482.0 0.44
BXH4/TyJ m 1926678.0 305670.0   2   216141.0 0.159 1710537.0, 2142820.0 0.25
BXH6/TyJ m 2138912.0 0.0   1   0.0 0.0 2138912.0, 2138912.0 0.42
BXH7/TyJ m 5462506.0 0.0   1   0.0 0.0 5462506.0, 5462506.0 3.09
BXH8/TyJ m 1647056.0 0.0   1   0.0 0.0 1647056.0, 1647056.0 0.03
BXH9/TyJ m 1075437.0 0.0   1   0.0 0.0 1075437.0, 1075437.0 -0.43
C3H/HeJ m 1509757.0 391634.0   2   276927.0 0.259 1232830.0, 1786684.0 -0.08
C57BL/6J m 776384.0 332415.0   3 191920.0 0.428 434939.0, 1098966.0 -0.67
C57L/J m 265230.0 0.0   1   0.0 0.0 265230.0, 265230.0 -1.08
C58/J m 3852142.0 0.0   1   0.0 0.0 3852142.0, 3852142.0 1.8
CAST/EiJ m 3169386.0 0.0   1   0.0 0.0 3169386.0, 3169386.0 1.25
CBA/J m 999565.0 0.0   1   0.0 0.0 999565.0, 999565.0 -0.49
CE/J m 1235142.0 0.0   1   0.0 0.0 1235142.0, 1235142.0 -0.3
CXB11/HiAJ m 650302.0 792328.0   2   560260.0 1.22 90042.0, 1210563.0 -0.77
CXB12/HiAJ m 1169742.0 0.0   1   0.0 0.0 1169742.0, 1169742.0 -0.36
CXB13/HiAJ m 1070421.0 658490.0   3 380179.0 0.615 579302.0, 1818684.0 -0.44
CXB1/ByJ m 2657580.0 1613979.0   3 931831.0 0.607 1219493.0, 4403200.0 0.84
CXB2/ByJ m 716409.0 965045.0   2   682390.0 1.35 34019.0, 1398799.0 -0.72
CXB3/ByJ m 1477931.0 371801.0   2   262903.0 0.252 1215028.0, 1740834.0 -0.11
CXB4/ByJ m 955039.0 497918.0   2   352081.0 0.521 602958.0, 1307121.0 -0.53
CXB6/ByJ m 1159155.0 0.0   1   0.0 0.0 1159155.0, 1159155.0 -0.37
CXB7/ByJ m 997554.0 270521.0   2   191287.0 0.271 806267.0, 1188841.0 -0.5
CXB8/HiAJ m 2271804.0 1318451.0   3 761208.0 0.58 793826.0, 3327016.0 0.53
CXB9/HiAJ m 606003.0 0.0   1   0.0 0.0 606003.0, 606003.0 -0.81
DBA/2J m 1319289.0 948183.0   4 474091.0 0.719 238688.0, 2551146.0 -0.24
FVB/NJ m 1215028.0 0.0   1   0.0 0.0 1215028.0, 1215028.0 -0.32
I/LnJ m 1944360.0 0.0   1   0.0 0.0 1944360.0, 1944360.0 0.26
KK/HlJ m 1180356.0 0.0   1   0.0 0.0 1180356.0, 1180356.0 -0.35
LG/J m 3949314.0 0.0   1   0.0 0.0 3949314.0, 3949314.0 1.87
LP/J m 2178340.0 0.0   1   0.0 0.0 2178340.0, 2178340.0 0.45
MA/MyJ m 760080.0 0.0   1   0.0 0.0 760080.0, 760080.0 -0.69
NOD/ShiLtJ m 1076129.0 0.0   1   0.0 0.0 1076129.0, 1076129.0 -0.43
NON/ShiLtJ m 4935092.0 0.0   1   0.0 0.0 4935092.0, 4935092.0 2.66
NZW/LacJ m 755073.0 0.0   1   0.0 0.0 755073.0, 755073.0 -0.69
PL/J m 1759479.0 0.0   1   0.0 0.0 1759479.0, 1759479.0 0.12
RIIIS/J m 414133.0 0.0   1   0.0 0.0 414133.0, 414133.0 -0.96
SEA/GnJ m 1150878.0 0.0   1   0.0 0.0 1150878.0, 1150878.0 -0.37
SJL/J m 3588381.0 0.0   1   0.0 0.0 3588381.0, 3588381.0 1.58
SM/J m 1591868.0 0.0   1   0.0 0.0 1591868.0, 1591868.0 -0.02
SWR/J m 1114912.0 0.0   1   0.0 0.0 1114912.0, 1114912.0 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 979379.15 648035.4701 2311435.136 0.0
AXB19b/PgnJ m 4528588.25 648035.4701 5860644.236 3196532.264
AXB24/PgnJ m 1075568.0 648035.4701 2407623.986 0.0
BALB/cJ m 951996.3667 529118.7456 2039615.5249 0.0
BXA16/PgnJ m 876838.1 648035.4701 2208894.086 0.0
BXD19/TyJ m 1170653.0 648035.4701 2502708.986 0.0
BXD28/TyJ m 784726.65 648035.4701 2116782.636 0.0
BXH4/TyJ m 1926678.3 648035.4701 3258734.286 594622.314
C3H/HeJ m 1509756.65 648035.4701 2841812.636 177700.664
C57BL/6J m 776383.5333 529118.7456 1864002.6915 0.0
CXB11/HiAJ m 650302.5 648035.4701 1982358.486 0.0
CXB13/HiAJ m 1070421.4667 529118.7456 2158040.6249 0.0
CXB1/ByJ m 2657580.0333 529118.7456 3745199.1915 1569960.8751
CXB2/ByJ m 716409.05 648035.4701 2048465.036 0.0
CXB3/ByJ m 1477931.05 648035.4701 2809987.036 145875.064
CXB4/ByJ m 955039.45 648035.4701 2287095.436 0.0
CXB7/ByJ m 997553.75 648035.4701 2329609.736 0.0
CXB8/HiAJ m 2271804.4333 529118.7456 3359423.5915 1184185.2751
DBA/2J m 1319289.025 458230.2753 2261194.8456 377383.2044




  GWAS USING LINEAR MIXED MODELS