Project measure / variable:   HMDPpheno9   AGPC

ID, description, units MPD:50401   AGPC   liver 2-arachidonoylglycerophosphocholine (16h fast), relative abundance    
Data set, strains HMDPpheno9   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno9 - liver 2-arachidonoylglycerophosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1408515   None
Median of the strain means1090320   None
SD of the strain means± 1115992
Coefficient of variation (CV)0.792
Min–max range of strain means240102   –   7852814   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 23797613270033.9 1133219679525.43 1.9579 0.0451
Residuals 30 17363864689919.7 578795489663.991


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2572248.0 0.0   1   0.0 0.0 2572248.0, 2572248.0 1.04
A/J m 761522.0 723087.0   2   511299.0 0.95 250222.0, 1272821.0 -0.58
AKR/J m 695289.0 0.0   1   0.0 0.0 695289.0, 695289.0 -0.64
AXB10/PgnJ m 996069.0 0.0   1   0.0 0.0 996069.0, 996069.0 -0.37
AXB12/PgnJ m 517178.0 0.0   1   0.0 0.0 517178.0, 517178.0 -0.8
AXB13/PgnJ m 407866.0 0.0   1   0.0 0.0 407866.0, 407866.0 -0.9
AXB15/PgnJ m 240102.0 0.0   1   0.0 0.0 240102.0, 240102.0 -1.05
AXB19a/PgnJ m 1413184.0 0.0   1   0.0 0.0 1413184.0, 1413184.0 0.0
AXB19b/PgnJ m 3515922.0 1976938.0   2   1397906.0 0.562 2118015.0, 4913828.0 1.89
AXB19/PgnJ m 2332688.0 0.0   1   0.0 0.0 2332688.0, 2332688.0 0.83
AXB1/PgnJ m 5264340.0 0.0   1   0.0 0.0 5264340.0, 5264340.0 3.46
AXB23/PgnJ m 2194945.0 0.0   1   0.0 0.0 2194945.0, 2194945.0 0.7
AXB24/PgnJ m 900376.0 741537.0   2   524346.0 0.824 376031.0, 1424722.0 -0.46
AXB2/PgnJ m 956815.0 0.0   1   0.0 0.0 956815.0, 956815.0 -0.4
AXB4/PgnJ m 1706648.0 0.0   1   0.0 0.0 1706648.0, 1706648.0 0.27
AXB5/PgnJ m 604216.0 0.0   1   0.0 0.0 604216.0, 604216.0 -0.72
AXB6/PgnJ m 1136254.0 0.0   1   0.0 0.0 1136254.0, 1136254.0 -0.24
AXB8/PgnJ m 575646.0 0.0   1   0.0 0.0 575646.0, 575646.0 -0.75
BALB/cJ m 1129418.0 642654.0   3 371036.0 0.569 731726.0, 1870836.0 -0.25
BTBR T+ Itpr3tf/J m 1563448.0 0.0   1   0.0 0.0 1563448.0, 1563448.0 0.14
BUB/BnJ m 1323810.0 0.0   1   0.0 0.0 1323810.0, 1323810.0 -0.08
BXA11/PgnJ m 688819.0 0.0   1   0.0 0.0 688819.0, 688819.0 -0.64
BXA12/PgnJ m 560081.0 0.0   1   0.0 0.0 560081.0, 560081.0 -0.76
BXA13/PgnJ m 1502385.0 0.0   1   0.0 0.0 1502385.0, 1502385.0 0.08
BXA14/PgnJ m 2646879.0 0.0   1   0.0 0.0 2646879.0, 2646879.0 1.11
BXA16/PgnJ m 1001293.0 20663.0   2   14611.0 0.0206 986682.0, 1015903.0 -0.36
BXA1/PgnJ m 873426.0 0.0   1   0.0 0.0 873426.0, 873426.0 -0.48
BXA24/PgnJ m 1833234.0 0.0   1   0.0 0.0 1833234.0, 1833234.0 0.38
BXA25/PgnJ m 630648.0 0.0   1   0.0 0.0 630648.0, 630648.0 -0.7
BXA26/PgnJ m 2289429.0 0.0   1   0.0 0.0 2289429.0, 2289429.0 0.79
BXA2/PgnJ m 1092827.0 0.0   1   0.0 0.0 1092827.0, 1092827.0 -0.28
BXA4/PgnJ m 1123962.0 0.0   1   0.0 0.0 1123962.0, 1123962.0 -0.25
BXA7/PgnJ m 475856.0 0.0   1   0.0 0.0 475856.0, 475856.0 -0.84
BXA8/PgnJ m 947212.0 0.0   1   0.0 0.0 947212.0, 947212.0 -0.41
BXD11/TyJ m 529056.0 0.0   1   0.0 0.0 529056.0, 529056.0 -0.79
BXD12/TyJ m 2278823.0 0.0   1   0.0 0.0 2278823.0, 2278823.0 0.78
BXD13/TyJ m 775573.0 0.0   1   0.0 0.0 775573.0, 775573.0 -0.57
BXD14/TyJ m 2349224.0 0.0   1   0.0 0.0 2349224.0, 2349224.0 0.84
BXD15/TyJ m 1242644.0 0.0   1   0.0 0.0 1242644.0, 1242644.0 -0.15
BXD18/TyJ m 432797.0 0.0   1   0.0 0.0 432797.0, 432797.0 -0.87
BXD19/TyJ m 949893.0 89043.0   2   62963.0 0.0937 886930.0, 1012856.0 -0.41
BXD1/TyJ m 1074314.0 0.0   1   0.0 0.0 1074314.0, 1074314.0 -0.3
BXD20/TyJ m 1276515.0 0.0   1   0.0 0.0 1276515.0, 1276515.0 -0.12
BXD21/TyJ m 298138.0 0.0   1   0.0 0.0 298138.0, 298138.0 -0.99
BXD22/TyJ m 1594487.0 0.0   1   0.0 0.0 1594487.0, 1594487.0 0.17
BXD24/TyJ m 802233.0 0.0   1   0.0 0.0 802233.0, 802233.0 -0.54
BXD24/TyJ-Cep290rd16/J m 879950.0 0.0   1   0.0 0.0 879950.0, 879950.0 -0.47
BXD28/TyJ m 593226.0 95041.0   2   67204.0 0.16 526022.0, 660430.0 -0.73
BXD29-Tlr4lps-2J/J m 797333.0 0.0   1   0.0 0.0 797333.0, 797333.0 -0.55
BXD2/TyJ m 1151041.0 0.0   1   0.0 0.0 1151041.0, 1151041.0 -0.23
BXD32/TyJ m 453807.0 0.0   1   0.0 0.0 453807.0, 453807.0 -0.86
BXD33/TyJ m 2388927.0 0.0   1   0.0 0.0 2388927.0, 2388927.0 0.88
BXD34/TyJ m 790727.0 0.0   1   0.0 0.0 790727.0, 790727.0 -0.55
BXD36/TyJ m 574898.0 0.0   1   0.0 0.0 574898.0, 574898.0 -0.75
BXD38/TyJ m 1043687.0 0.0   1   0.0 0.0 1043687.0, 1043687.0 -0.33
BXD39/TyJ m 1076085.0 0.0   1   0.0 0.0 1076085.0, 1076085.0 -0.3
BXD40/TyJ m 729736.0 0.0   1   0.0 0.0 729736.0, 729736.0 -0.61
BXD42/TyJ m 1320276.0 0.0   1   0.0 0.0 1320276.0, 1320276.0 -0.08
BXD5/TyJ m 1367381.0 0.0   1   0.0 0.0 1367381.0, 1367381.0 -0.04
BXD6/TyJ m 1580893.0 0.0   1   0.0 0.0 1580893.0, 1580893.0 0.15
BXD8/TyJ m 328493.0 0.0   1   0.0 0.0 328493.0, 328493.0 -0.97
BXD9/TyJ m 1507527.0 0.0   1   0.0 0.0 1507527.0, 1507527.0 0.09
BXH10/TyJ m 1380399.0 0.0   1   0.0 0.0 1380399.0, 1380399.0 -0.03
BXH19/TyJ m 7852814.0 0.0   1   0.0 0.0 7852814.0, 7852814.0 5.77
BXH20/KccJ m 1550947.0 0.0   1   0.0 0.0 1550947.0, 1550947.0 0.13
BXH22/KccJ m 1205213.0 0.0   1   0.0 0.0 1205213.0, 1205213.0 -0.18
BXH2/TyJ m 2058618.0 0.0   1   0.0 0.0 2058618.0, 2058618.0 0.58
BXH4/TyJ m 1876731.0 11647.0   2   8236.0 0.00621 1868496.0, 1884967.0 0.42
BXH6/TyJ m 1624358.0 0.0   1   0.0 0.0 1624358.0, 1624358.0 0.19
BXH7/TyJ m 4241946.0 0.0   1   0.0 0.0 4241946.0, 4241946.0 2.54
BXH8/TyJ m 1549572.0 0.0   1   0.0 0.0 1549572.0, 1549572.0 0.13
BXH9/TyJ m 921950.0 0.0   1   0.0 0.0 921950.0, 921950.0 -0.44
C3H/HeJ m 2162920.0 271405.0   2   191912.0 0.125 1971008.0, 2354832.0 0.68
C57BL/6J m 512621.0 457073.0   4 228537.0 0.892 75588.0, 991760.0 -0.8
C57L/J m 325297.0 0.0   1   0.0 0.0 325297.0, 325297.0 -0.97
C58/J m 2206420.0 0.0   1   0.0 0.0 2206420.0, 2206420.0 0.71
CAST/EiJ m 1976374.0 0.0   1   0.0 0.0 1976374.0, 1976374.0 0.51
CBA/J m 1007451.0 0.0   1   0.0 0.0 1007451.0, 1007451.0 -0.36
CE/J m 1519116.0 0.0   1   0.0 0.0 1519116.0, 1519116.0 0.1
CXB11/HiAJ m 682199.0 840725.0   2   594482.0 1.23 87716.0, 1276681.0 -0.65
CXB12/HiAJ m 559855.0 629592.0   2   445188.0 1.12 114666.0, 1005043.0 -0.76
CXB13/HiAJ m 1047712.0 536395.0   3 309688.0 0.512 711453.0, 1666304.0 -0.32
CXB1/ByJ m 1900683.0 1318395.0   3 761176.0 0.694 1081948.0, 3421544.0 0.44
CXB2/ByJ m 799858.0 378654.0   2   267749.0 0.473 532109.0, 1067608.0 -0.55
CXB3/ByJ m 1312507.0 143372.0   2   101379.0 0.109 1211128.0, 1413886.0 -0.09
CXB4/ByJ m 934869.0 418169.0   2   295690.0 0.447 639179.0, 1230558.0 -0.42
CXB6/ByJ m 550056.0 571142.0   2   403858.0 1.04 146197.0, 953914.0 -0.77
CXB7/ByJ m 590943.0 184082.0   2   130165.0 0.312 460777.0, 721108.0 -0.73
CXB8/HiAJ m 1656420.0 875377.0   3 505399.0 0.528 647734.0, 2217313.0 0.22
CXB9/HiAJ m 444350.0 306502.0   2   216729.0 0.69 227620.0, 661079.0 -0.86
DBA/2J m 1443662.0 1058070.0   4 529035.0 0.733 546002.0, 2976724.0 0.03
FVB/NJ m 1081948.0 0.0   1   0.0 0.0 1081948.0, 1081948.0 -0.29
I/LnJ m 1580931.0 0.0   1   0.0 0.0 1580931.0, 1580931.0 0.15
KK/HlJ m 1009363.0 0.0   1   0.0 0.0 1009363.0, 1009363.0 -0.36
LG/J m 4516422.0 0.0   1   0.0 0.0 4516422.0, 4516422.0 2.78
LP/J m 2482247.0 0.0   1   0.0 0.0 2482247.0, 2482247.0 0.96
MA/MyJ m 861765.0 0.0   1   0.0 0.0 861765.0, 861765.0 -0.49
NOD/ShiLtJ m 1087812.0 0.0   1   0.0 0.0 1087812.0, 1087812.0 -0.29
NON/ShiLtJ m 4786950.0 0.0   1   0.0 0.0 4786950.0, 4786950.0 3.03
NZW/LacJ m 905130.0 0.0   1   0.0 0.0 905130.0, 905130.0 -0.45
PL/J m 1719175.0 0.0   1   0.0 0.0 1719175.0, 1719175.0 0.28
RIIIS/J m 551946.0 0.0   1   0.0 0.0 551946.0, 551946.0 -0.77
SEA/GnJ m 1039935.0 0.0   1   0.0 0.0 1039935.0, 1039935.0 -0.33
SJL/J m 2501776.0 0.0   1   0.0 0.0 2501776.0, 2501776.0 0.98
SM/J m 1295615.0 0.0   1   0.0 0.0 1295615.0, 1295615.0 -0.1
SWR/J m 1323980.0 0.0   1   0.0 0.0 1323980.0, 1323980.0 -0.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 761521.65 537957.0102 1860176.4346 0.0
AXB19b/PgnJ m 3515921.65 537957.0102 4614576.4346 2417266.8654
AXB24/PgnJ m 900376.1 537957.0102 1999030.8846 0.0
BALB/cJ m 1129417.6 439240.0595 2026465.4753 232369.7247
BXA16/PgnJ m 1001292.75 537957.0102 2099947.5346 0.0
BXD19/TyJ m 949893.2 537957.0102 2048547.9846 0.0
BXD28/TyJ m 593225.7 537957.0102 1691880.4846 0.0
BXH4/TyJ m 1876731.4 537957.0102 2975386.1846 778076.6154
C3H/HeJ m 2162919.5 537957.0102 3261574.2846 1064264.7154
C57BL/6J m 512620.625 380393.0499 1289486.8734 0.0
CXB11/HiAJ m 682198.65 537957.0102 1780853.4346 0.0
CXB12/HiAJ m 559854.95 537957.0102 1658509.7346 0.0
CXB13/HiAJ m 1047711.6333 439240.0595 1944759.5086 150663.7581
CXB1/ByJ m 1900682.5333 439240.0595 2797730.4086 1003634.6581
CXB2/ByJ m 799858.4 537957.0102 1898513.1846 0.0
CXB3/ByJ m 1312506.8 537957.0102 2411161.5846 213852.0154
CXB4/ByJ m 934868.55 537957.0102 2033523.3346 0.0
CXB6/ByJ m 550055.55 537957.0102 1648710.3346 0.0
CXB7/ByJ m 590942.7 537957.0102 1689597.4846 0.0
CXB8/HiAJ m 1656420.4 439240.0595 2553468.2753 759372.5247
CXB9/HiAJ m 444349.9 537957.0102 1543004.6846 0.0
DBA/2J m 1443662.125 380393.0499 2220528.3734 666795.8766




  GWAS USING LINEAR MIXED MODELS