Phenotype measure:   HMDPpheno8   corticosterone

ID, description, units MPD:50389   corticosterone   liver corticosterone (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   92 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver corticosterone (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested92 strains
Mean of the strain means81211   None
Median of the strain means64858   None
SD of the strain means± 59975
Coefficient of variation (CV)0.738
Min–max range of strain means10493   –   376736   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 14 147688182632.767 10549155902.3405 1.4263 0.2153
Residuals 24 177512534309.176 7396355596.2157


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 50951.0 0.0   1   0.0 0.0 50951.0, 50951.0 -0.5
A/J m 55624.0 24878.0   2   17592.0 0.447 38032.0, 73216.0 -0.43
AKR/J m 55139.0 0.0   1   0.0 0.0 55139.0, 55139.0 -0.43
AXB10/PgnJ m 63956.0 0.0   1   0.0 0.0 63956.0, 63956.0 -0.29
AXB12/PgnJ m 79722.0 0.0   1   0.0 0.0 79722.0, 79722.0 -0.02
AXB13/PgnJ m 36227.0 0.0   1   0.0 0.0 36227.0, 36227.0 -0.75
AXB15/PgnJ m 113083.0 0.0   1   0.0 0.0 113083.0, 113083.0 0.53
AXB19a/PgnJ m 177662.0 0.0   1   0.0 0.0 177662.0, 177662.0 1.61
AXB19b/PgnJ m 235702.0 158032.0   2   111746.0 0.67 123956.0, 347448.0 2.58
AXB19/PgnJ m 113002.0 0.0   1   0.0 0.0 113002.0, 113002.0 0.53
AXB1/PgnJ m 224505.0 0.0   1   0.0 0.0 224505.0, 224505.0 2.39
AXB24/PgnJ m 35325.0 2304.0   2   1629.0 0.0652 33696.0, 36955.0 -0.77
AXB2/PgnJ m 179599.0 0.0   1   0.0 0.0 179599.0, 179599.0 1.64
AXB4/PgnJ m 69735.0 0.0   1   0.0 0.0 69735.0, 69735.0 -0.19
AXB5/PgnJ m 35082.0 0.0   1   0.0 0.0 35082.0, 35082.0 -0.77
AXB6/PgnJ m 72414.0 0.0   1   0.0 0.0 72414.0, 72414.0 -0.15
AXB8/PgnJ m 67056.0 0.0   1   0.0 0.0 67056.0, 67056.0 -0.24
BALB/cJ m 98652.0 56162.0   3 32425.0 0.569 53589.0, 161570.0 0.29
BTBR T+ Itpr3tf/J m 69405.0 0.0   1   0.0 0.0 69405.0, 69405.0 -0.2
BUB/BnJ m 74033.0 0.0   1   0.0 0.0 74033.0, 74033.0 -0.12
BXA11/PgnJ m 56962.0 0.0   1   0.0 0.0 56962.0, 56962.0 -0.4
BXA13/PgnJ m 31402.0 0.0   1   0.0 0.0 31402.0, 31402.0 -0.83
BXA16/PgnJ m 60854.0 15157.0   2   10718.0 0.249 50137.0, 71572.0 -0.34
BXA1/PgnJ m 43988.0 0.0   1   0.0 0.0 43988.0, 43988.0 -0.62
BXA25/PgnJ m 32075.0 0.0   1   0.0 0.0 32075.0, 32075.0 -0.82
BXA26/PgnJ m 126458.0 0.0   1   0.0 0.0 126458.0, 126458.0 0.75
BXA2/PgnJ m 69735.0 0.0   1   0.0 0.0 69735.0, 69735.0 -0.19
BXA4/PgnJ m 64897.0 0.0   1   0.0 0.0 64897.0, 64897.0 -0.27
BXA7/PgnJ m 64819.0 0.0   1   0.0 0.0 64819.0, 64819.0 -0.27
BXA8/PgnJ m 87863.0 0.0   1   0.0 0.0 87863.0, 87863.0 0.11
BXD11/TyJ m 77409.0 0.0   1   0.0 0.0 77409.0, 77409.0 -0.06
BXD12/TyJ m 41062.0 0.0   1   0.0 0.0 41062.0, 41062.0 -0.67
BXD13/TyJ m 28656.0 0.0   1   0.0 0.0 28656.0, 28656.0 -0.88
BXD14/TyJ m 51294.0 0.0   1   0.0 0.0 51294.0, 51294.0 -0.5
BXD18/TyJ m 10493.0 0.0   1   0.0 0.0 10493.0, 10493.0 -1.18
BXD19/TyJ m 47305.0 0.0   1   0.0 0.0 47305.0, 47305.0 -0.57
BXD1/TyJ m 18444.0 0.0   1   0.0 0.0 18444.0, 18444.0 -1.05
BXD20/TyJ m 108729.0 0.0   1   0.0 0.0 108729.0, 108729.0 0.46
BXD22/TyJ m 52442.0 0.0   1   0.0 0.0 52442.0, 52442.0 -0.48
BXD24/TyJ m 42386.0 0.0   1   0.0 0.0 42386.0, 42386.0 -0.65
BXD24/TyJ-Cep290rd16/J m 54614.0 0.0   1   0.0 0.0 54614.0, 54614.0 -0.44
BXD28/TyJ m 52332.0 40891.0   2   28914.0 0.781 23418.0, 81247.0 -0.48
BXD29-Tlr4lps-2J/J m 55371.0 0.0   1   0.0 0.0 55371.0, 55371.0 -0.43
BXD32/TyJ m 45856.0 0.0   1   0.0 0.0 45856.0, 45856.0 -0.59
BXD33/TyJ m 65369.0 0.0   1   0.0 0.0 65369.0, 65369.0 -0.26
BXD34/TyJ m 17829.0 0.0   1   0.0 0.0 17829.0, 17829.0 -1.06
BXD36/TyJ m 48929.0 0.0   1   0.0 0.0 48929.0, 48929.0 -0.54
BXD38/TyJ m 28098.0 0.0   1   0.0 0.0 28098.0, 28098.0 -0.89
BXD40/TyJ m 25060.0 0.0   1   0.0 0.0 25060.0, 25060.0 -0.94
BXD42/TyJ m 22645.0 0.0   1   0.0 0.0 22645.0, 22645.0 -0.98
BXD5/TyJ m 88486.0 0.0   1   0.0 0.0 88486.0, 88486.0 0.12
BXD6/TyJ m 100825.0 0.0   1   0.0 0.0 100825.0, 100825.0 0.33
BXD8/TyJ m 45288.0 0.0   1   0.0 0.0 45288.0, 45288.0 -0.6
BXD9/TyJ m 33239.0 0.0   1   0.0 0.0 33239.0, 33239.0 -0.8
BXH10/TyJ m 86303.0 0.0   1   0.0 0.0 86303.0, 86303.0 0.08
BXH19/TyJ m 57928.0 0.0   1   0.0 0.0 57928.0, 57928.0 -0.39
BXH20/KccJ m 16383.0 0.0   1   0.0 0.0 16383.0, 16383.0 -1.08
BXH4/TyJ m 58472.0 0.0   1   0.0 0.0 58472.0, 58472.0 -0.38
BXH6/TyJ m 106173.0 0.0   1   0.0 0.0 106173.0, 106173.0 0.42
BXH7/TyJ m 28911.0 0.0   1   0.0 0.0 28911.0, 28911.0 -0.87
BXH8/TyJ m 165935.0 0.0   1   0.0 0.0 165935.0, 165935.0 1.41
C3H/HeJ m 81211.0 0.0   1   0.0 0.0 81211.0, 81211.0 0.0
C57BL/6J m 141542.0 55644.0   5 24885.0 0.393 73738.0, 197423.0 1.01
C57L/J m 54793.0 0.0   1   0.0 0.0 54793.0, 54793.0 -0.44
C58/J m 181536.0 0.0   1   0.0 0.0 181536.0, 181536.0 1.67
CAST/EiJ m 22872.0 0.0   1   0.0 0.0 22872.0, 22872.0 -0.97
CBA/J m 45273.0 0.0   1   0.0 0.0 45273.0, 45273.0 -0.6
CE/J m 81494.0 0.0   1   0.0 0.0 81494.0, 81494.0 0.0
CXB11/HiAJ m 69735.0 0.0   1   0.0 0.0 69735.0, 69735.0 -0.19
CXB12/HiAJ m 91763.0 47878.0   2   33855.0 0.522 57908.0, 125618.0 0.18
CXB13/HiAJ m 210093.0 145031.0   3 83734.0 0.69 70163.0, 359737.0 2.15
CXB1/ByJ m 208751.0 167654.0   3 96795.0 0.803 45562.0, 380538.0 2.13
CXB2/ByJ m 196195.0 84154.0   3 48586.0 0.429 137210.0, 292564.0 1.92
CXB3/ByJ m 115865.0 75817.0   2   53611.0 0.654 62254.0, 169476.0 0.58
CXB4/ByJ m 74961.0 7390.0   2   5225.0 0.0986 69735.0, 80186.0 -0.1
CXB6/ByJ m 192110.0 47627.0   3 27498.0 0.248 142922.0, 238005.0 1.85
CXB7/ByJ m 49584.0 0.0   1   0.0 0.0 49584.0, 49584.0 -0.53
CXB8/HiAJ m 142949.0 55858.0   3 32249.0 0.391 83668.0, 194598.0 1.03
CXB9/HiAJ m 107567.0 0.0   1   0.0 0.0 107567.0, 107567.0 0.44
DBA/2J m 22441.0 0.0   1   0.0 0.0 22441.0, 22441.0 -0.98
FVB/NJ m 376736.0 0.0   1   0.0 0.0 376736.0, 376736.0 4.93
KK/HlJ m 60163.0 0.0   1   0.0 0.0 60163.0, 60163.0 -0.35
LP/J m 116376.0 0.0   1   0.0 0.0 116376.0, 116376.0 0.59
MA/MyJ m 81582.0 0.0   1   0.0 0.0 81582.0, 81582.0 0.01
NOD/ShiLtJ m 94568.0 0.0   1   0.0 0.0 94568.0, 94568.0 0.22
NON/ShiLtJ m 65320.0 0.0   1   0.0 0.0 65320.0, 65320.0 -0.26
NZW/LacJ m 42420.0 0.0   1   0.0 0.0 42420.0, 42420.0 -0.65
PL/J m 44536.0 0.0   1   0.0 0.0 44536.0, 44536.0 -0.61
SEA/GnJ m 36186.0 0.0   1   0.0 0.0 36186.0, 36186.0 -0.75
SJL/J m 36359.0 0.0   1   0.0 0.0 36359.0, 36359.0 -0.75
SM/J m 118509.0 0.0   1   0.0 0.0 118509.0, 118509.0 0.62
SWR/J m 79767.0 0.0   1   0.0 0.0 79767.0, 79767.0 -0.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 55624.05 60812.6451 181135.1806 0.0
AXB19b/PgnJ m 235702.1 60812.6451 361213.2306 110190.9694
AXB24/PgnJ m 35325.35 60812.6451 160836.4806 0.0
BALB/cJ m 98651.7333 49653.3168 201131.1424 0.0
BXA16/PgnJ m 60854.3 60812.6451 186365.4306 0.0
BXD28/TyJ m 52332.4 60812.6451 177843.5306 0.0
C57BL/6J m 141541.8 38461.2938 220922.0089 62161.5911
CXB12/HiAJ m 91763.1 60812.6451 217274.2306 0.0
CXB13/HiAJ m 210092.7 49653.3168 312572.109 107613.291
CXB1/ByJ m 208751.2333 49653.3168 311230.6424 106271.8243
CXB2/ByJ m 196195.1 49653.3168 298674.509 93715.691
CXB3/ByJ m 115865.1 60812.6451 241376.2306 0.0
CXB4/ByJ m 74960.6 60812.6451 200471.7306 0.0
CXB6/ByJ m 192110.2667 49653.3168 294589.6757 89630.8576
CXB8/HiAJ m 142949.2333 49653.3168 245428.6424 40469.8243




  GWAS USING LINEAR MIXED MODELS