Phenotype measure:   HMDPpheno8   squalene

ID, description, units MPD:50388   squalene   liver vsqualene (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver vsqualene (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means121695   None
Median of the strain means114826   None
SD of the strain means± 50463
Coefficient of variation (CV)0.415
Min–max range of strain means38193   –   276850   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 17 131142023544.572 7714236679.0924 2.9005 0.0071
Residuals 26 69150137858.74 2659620686.8746


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 87813.0 0.0   1   0.0 0.0 87813.0, 87813.0 -0.67
A/J m 141046.0 7245.0   2   5123.0 0.0514 135924.0, 146169.0 0.38
AKR/J m 82387.0 0.0   1   0.0 0.0 82387.0, 82387.0 -0.78
AXB13/PgnJ m 114826.0 0.0   1   0.0 0.0 114826.0, 114826.0 -0.14
AXB15/PgnJ m 97937.0 0.0   1   0.0 0.0 97937.0, 97937.0 -0.47
AXB19a/PgnJ m 179008.0 0.0   1   0.0 0.0 179008.0, 179008.0 1.14
AXB19b/PgnJ m 143276.0 53219.0   2   37632.0 0.371 105644.0, 180908.0 0.43
AXB19/PgnJ m 162306.0 0.0   1   0.0 0.0 162306.0, 162306.0 0.8
AXB1/PgnJ m 111623.0 0.0   1   0.0 0.0 111623.0, 111623.0 -0.2
AXB23/PgnJ m 96727.0 0.0   1   0.0 0.0 96727.0, 96727.0 -0.49
AXB24/PgnJ m 55498.0 0.0   1   0.0 0.0 55498.0, 55498.0 -1.31
AXB2/PgnJ m 61575.0 0.0   1   0.0 0.0 61575.0, 61575.0 -1.19
AXB4/PgnJ m 201641.0 0.0   1   0.0 0.0 201641.0, 201641.0 1.58
AXB5/PgnJ m 58565.0 0.0   1   0.0 0.0 58565.0, 58565.0 -1.25
AXB6/PgnJ m 97126.0 0.0   1   0.0 0.0 97126.0, 97126.0 -0.49
AXB8/PgnJ m 65954.0 0.0   1   0.0 0.0 65954.0, 65954.0 -1.1
BALB/cJ m 242135.0 31235.0   3 18033.0 0.129 221935.0, 278111.0 2.39
BUB/BnJ m 68098.0 0.0   1   0.0 0.0 68098.0, 68098.0 -1.06
BXA11/PgnJ m 112484.0 0.0   1   0.0 0.0 112484.0, 112484.0 -0.18
BXA12/PgnJ m 50848.0 0.0   1   0.0 0.0 50848.0, 50848.0 -1.4
BXA13/PgnJ m 198894.0 0.0   1   0.0 0.0 198894.0, 198894.0 1.53
BXA14/PgnJ m 165964.0 0.0   1   0.0 0.0 165964.0, 165964.0 0.88
BXA16/PgnJ m 124344.0 16416.0   2   11608.0 0.132 112737.0, 135952.0 0.05
BXA1/PgnJ m 225327.0 0.0   1   0.0 0.0 225327.0, 225327.0 2.05
BXA24/PgnJ m 183662.0 0.0   1   0.0 0.0 183662.0, 183662.0 1.23
BXA2/PgnJ m 146897.0 0.0   1   0.0 0.0 146897.0, 146897.0 0.5
BXA7/PgnJ m 121012.0 0.0   1   0.0 0.0 121012.0, 121012.0 -0.01
BXA8/PgnJ m 115108.0 0.0   1   0.0 0.0 115108.0, 115108.0 -0.13
BXD11/TyJ m 108538.0 0.0   1   0.0 0.0 108538.0, 108538.0 -0.26
BXD12/TyJ m 123892.0 0.0   1   0.0 0.0 123892.0, 123892.0 0.04
BXD14/TyJ m 188394.0 0.0   1   0.0 0.0 188394.0, 188394.0 1.32
BXD15/TyJ m 150318.0 0.0   1   0.0 0.0 150318.0, 150318.0 0.57
BXD18/TyJ m 73156.0 0.0   1   0.0 0.0 73156.0, 73156.0 -0.96
BXD19/TyJ m 104806.0 9444.0   2   6678.0 0.0901 98128.0, 111484.0 -0.33
BXD1/TyJ m 108553.0 0.0   1   0.0 0.0 108553.0, 108553.0 -0.26
BXD20/TyJ m 50725.0 0.0   1   0.0 0.0 50725.0, 50725.0 -1.41
BXD21/TyJ m 56251.0 0.0   1   0.0 0.0 56251.0, 56251.0 -1.3
BXD22/TyJ m 112484.0 0.0   1   0.0 0.0 112484.0, 112484.0 -0.18
BXD24/TyJ m 65280.0 0.0   1   0.0 0.0 65280.0, 65280.0 -1.12
BXD24/TyJ-Cep290rd16/J m 81761.0 0.0   1   0.0 0.0 81761.0, 81761.0 -0.79
BXD28/TyJ m 60988.0 31083.0   2   21979.0 0.51 39008.0, 82967.0 -1.2
BXD29-Tlr4lps-2J/J m 118187.0 0.0   1   0.0 0.0 118187.0, 118187.0 -0.07
BXD2/TyJ m 125477.0 0.0   1   0.0 0.0 125477.0, 125477.0 0.07
BXD32/TyJ m 57292.0 0.0   1   0.0 0.0 57292.0, 57292.0 -1.28
BXD33/TyJ m 130404.0 0.0   1   0.0 0.0 130404.0, 130404.0 0.17
BXD34/TyJ m 99117.0 0.0   1   0.0 0.0 99117.0, 99117.0 -0.45
BXD36/TyJ m 98375.0 0.0   1   0.0 0.0 98375.0, 98375.0 -0.46
BXD38/TyJ m 38193.0 0.0   1   0.0 0.0 38193.0, 38193.0 -1.65
BXD39/TyJ m 107424.0 0.0   1   0.0 0.0 107424.0, 107424.0 -0.28
BXD40/TyJ m 128401.0 0.0   1   0.0 0.0 128401.0, 128401.0 0.13
BXD5/TyJ m 81852.0 0.0   1   0.0 0.0 81852.0, 81852.0 -0.79
BXD6/TyJ m 109860.0 0.0   1   0.0 0.0 109860.0, 109860.0 -0.23
BXD8/TyJ m 49832.0 0.0   1   0.0 0.0 49832.0, 49832.0 -1.42
BXH20/KccJ m 112484.0 0.0   1   0.0 0.0 112484.0, 112484.0 -0.18
BXH22/KccJ m 138121.0 0.0   1   0.0 0.0 138121.0, 138121.0 0.33
BXH2/TyJ m 116259.0 0.0   1   0.0 0.0 116259.0, 116259.0 -0.11
BXH4/TyJ m 134651.0 49004.0   2   34651.0 0.364 100000.0, 169302.0 0.26
BXH6/TyJ m 166125.0 0.0   1   0.0 0.0 166125.0, 166125.0 0.88
BXH7/TyJ m 90474.0 0.0   1   0.0 0.0 90474.0, 90474.0 -0.62
BXH8/TyJ m 124354.0 0.0   1   0.0 0.0 124354.0, 124354.0 0.05
BXH9/TyJ m 86199.0 0.0   1   0.0 0.0 86199.0, 86199.0 -0.7
C3H/HeJ m 259712.0 22424.0   2   15856.0 0.0863 243856.0, 275568.0 2.74
C57BL/6J m 123548.0 30377.0   3 17538.0 0.246 88604.0, 143659.0 0.04
C57L/J m 62343.0 0.0   1   0.0 0.0 62343.0, 62343.0 -1.18
C58/J m 276850.0 0.0   1   0.0 0.0 276850.0, 276850.0 3.07
CAST/EiJ m 190226.0 0.0   1   0.0 0.0 190226.0, 190226.0 1.36
CBA/J m 150527.0 0.0   1   0.0 0.0 150527.0, 150527.0 0.57
CE/J m 59365.0 0.0   1   0.0 0.0 59365.0, 59365.0 -1.24
CXB12/HiAJ m 87041.0 22659.0   2   16022.0 0.26 71018.0, 103063.0 -0.69
CXB13/HiAJ m 144800.0 84890.0   3 49011.0 0.586 95367.0, 242821.0 0.46
CXB1/ByJ m 110549.0 37879.0   3 21870.0 0.343 85260.0, 154100.0 -0.22
CXB2/ByJ m 223803.0 133172.0   3 76887.0 0.595 121618.0, 374412.0 2.02
CXB3/ByJ m 85349.0 0.0   1   0.0 0.0 85349.0, 85349.0 -0.72
CXB4/ByJ m 106474.0 0.0   1   0.0 0.0 106474.0, 106474.0 -0.3
CXB6/ByJ m 60933.0 11028.0   3 6367.0 0.181 49144.0, 70997.0 -1.2
CXB7/ByJ m 115116.0 10831.0   2   7659.0 0.0941 107457.0, 122775.0 -0.13
CXB8/HiAJ m 122316.0 6749.0   2   4772.0 0.0552 117544.0, 127088.0 0.01
CXB9/HiAJ m 123248.0 56061.0   2   39641.0 0.455 83607.0, 162888.0 0.03
DBA/2J m 104087.0 21797.0   4 10899.0 0.209 86972.0, 134122.0 -0.35
FVB/NJ m 83720.0 0.0   1   0.0 0.0 83720.0, 83720.0 -0.75
I/LnJ m 191941.0 0.0   1   0.0 0.0 191941.0, 191941.0 1.39
KK/HlJ m 86376.0 0.0   1   0.0 0.0 86376.0, 86376.0 -0.7
LG/J m 152592.0 0.0   1   0.0 0.0 152592.0, 152592.0 0.61
LP/J m 161175.0 0.0   1   0.0 0.0 161175.0, 161175.0 0.78
MA/MyJ m 217640.0 0.0   1   0.0 0.0 217640.0, 217640.0 1.9
NOD/ShiLtJ m 90735.0 0.0   1   0.0 0.0 90735.0, 90735.0 -0.61
NON/ShiLtJ m 149241.0 0.0   1   0.0 0.0 149241.0, 149241.0 0.55
NZW/LacJ m 144177.0 0.0   1   0.0 0.0 144177.0, 144177.0 0.45
PL/J m 145843.0 0.0   1   0.0 0.0 145843.0, 145843.0 0.48
RIIIS/J m 119142.0 0.0   1   0.0 0.0 119142.0, 119142.0 -0.05
SEA/GnJ m 82855.0 0.0   1   0.0 0.0 82855.0, 82855.0 -0.77
SJL/J m 193665.0 0.0   1   0.0 0.0 193665.0, 193665.0 1.43
SWR/J m 181900.0 0.0   1   0.0 0.0 181900.0, 181900.0 1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 141046.3 36466.5647 216004.3973 66088.2027
AXB19b/PgnJ m 143276.0 36466.5647 218234.0973 68317.9027
BALB/cJ m 242134.5333 29774.8254 303337.5635 180931.5031
BXA16/PgnJ m 124344.3 36466.5647 199302.3973 49386.2027
BXD19/TyJ m 104805.75 36466.5647 179763.8473 29847.6527
BXD28/TyJ m 60987.55 36466.5647 135945.6473 0.0
BXH4/TyJ m 134650.7 36466.5647 209608.7973 59692.6027
C3H/HeJ m 259712.05 36466.5647 334670.1473 184753.9527
C57BL/6J m 123547.6333 29774.8254 184750.6635 62344.6031
CXB12/HiAJ m 87040.6 36466.5647 161998.6973 12082.5027
CXB13/HiAJ m 144799.5667 29774.8254 206002.5969 83596.5365
CXB1/ByJ m 110549.4667 29774.8254 171752.4969 49346.4365
CXB2/ByJ m 223803.2333 29774.8254 285006.2635 162600.2031
CXB6/ByJ m 60933.4667 29774.8254 122136.4969 0.0
CXB7/ByJ m 115115.95 36466.5647 190074.0473 40157.8527
CXB8/HiAJ m 122315.7 36466.5647 197273.7973 47357.6027
CXB9/HiAJ m 123247.7 36466.5647 198205.7973 48289.6027
DBA/2J m 104086.7 25785.7552 157090.0789 51083.3211




  GWAS USING LINEAR MIXED MODELS