Project measure / variable:   HMDPpheno8   PO_sphingomyelin

ID, description, units MPD:50382   PO_sphingomyelin   liver palmitoyl sphingomyelin (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver palmitoyl sphingomyelin (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1874015   None
Median of the strain means1834857   None
SD of the strain means± 383129
Coefficient of variation (CV)0.204
Min–max range of strain means1119724   –   3286346   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3997155575735.73 190340741701.701 1.9802 0.037
Residuals 34 3268213946513.99 96123939603.3527


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1732785.0 0.0   1   0.0 0.0 1732785.0, 1732785.0 -0.37
A/J m 2431909.0 311865.0   2   220522.0 0.128 2211388.0, 2652431.0 1.46
AKR/J m 1835994.0 0.0   1   0.0 0.0 1835994.0, 1835994.0 -0.1
AXB10/PgnJ m 1839804.0 0.0   1   0.0 0.0 1839804.0, 1839804.0 -0.09
AXB12/PgnJ m 1453988.0 0.0   1   0.0 0.0 1453988.0, 1453988.0 -1.1
AXB13/PgnJ m 1870850.0 0.0   1   0.0 0.0 1870850.0, 1870850.0 -0.01
AXB15/PgnJ m 1731866.0 0.0   1   0.0 0.0 1731866.0, 1731866.0 -0.37
AXB19a/PgnJ m 2636864.0 0.0   1   0.0 0.0 2636864.0, 2636864.0 1.99
AXB19b/PgnJ m 2180336.0 414904.0   2   293381.0 0.19 1886954.0, 2473717.0 0.8
AXB19/PgnJ m 1940098.0 0.0   1   0.0 0.0 1940098.0, 1940098.0 0.17
AXB1/PgnJ m 2918878.0 0.0   1   0.0 0.0 2918878.0, 2918878.0 2.73
AXB23/PgnJ m 1811140.0 0.0   1   0.0 0.0 1811140.0, 1811140.0 -0.16
AXB24/PgnJ m 1913904.0 776719.0   2   549223.0 0.406 1364681.0, 2463127.0 0.1
AXB2/PgnJ m 1848319.0 0.0   1   0.0 0.0 1848319.0, 1848319.0 -0.07
AXB4/PgnJ m 2139701.0 0.0   1   0.0 0.0 2139701.0, 2139701.0 0.69
AXB5/PgnJ m 2109766.0 0.0   1   0.0 0.0 2109766.0, 2109766.0 0.62
AXB6/PgnJ m 1680682.0 0.0   1   0.0 0.0 1680682.0, 1680682.0 -0.5
AXB8/PgnJ m 1463508.0 0.0   1   0.0 0.0 1463508.0, 1463508.0 -1.07
BALB/cJ m 2051565.0 184692.0   3 106632.0 0.09 1932552.0, 2264330.0 0.46
BTBR T+ Itpr3tf/J m 2107996.0 0.0   1   0.0 0.0 2107996.0, 2107996.0 0.61
BUB/BnJ m 1997944.0 0.0   1   0.0 0.0 1997944.0, 1997944.0 0.32
BXA11/PgnJ m 2096287.0 0.0   1   0.0 0.0 2096287.0, 2096287.0 0.58
BXA12/PgnJ m 1522951.0 0.0   1   0.0 0.0 1522951.0, 1522951.0 -0.92
BXA13/PgnJ m 1891888.0 0.0   1   0.0 0.0 1891888.0, 1891888.0 0.05
BXA14/PgnJ m 1821622.0 0.0   1   0.0 0.0 1821622.0, 1821622.0 -0.14
BXA16/PgnJ m 1662310.0 295252.0   2   208774.0 0.178 1453536.0, 1871085.0 -0.55
BXA1/PgnJ m 2101477.0 0.0   1   0.0 0.0 2101477.0, 2101477.0 0.59
BXA24/PgnJ m 1902904.0 0.0   1   0.0 0.0 1902904.0, 1902904.0 0.08
BXA25/PgnJ m 1640529.0 0.0   1   0.0 0.0 1640529.0, 1640529.0 -0.61
BXA26/PgnJ m 1913406.0 0.0   1   0.0 0.0 1913406.0, 1913406.0 0.1
BXA2/PgnJ m 2382518.0 0.0   1   0.0 0.0 2382518.0, 2382518.0 1.33
BXA4/PgnJ m 1808930.0 0.0   1   0.0 0.0 1808930.0, 1808930.0 -0.17
BXA7/PgnJ m 1930729.0 0.0   1   0.0 0.0 1930729.0, 1930729.0 0.15
BXA8/PgnJ m 2160851.0 0.0   1   0.0 0.0 2160851.0, 2160851.0 0.75
BXD11/TyJ m 1388630.0 0.0   1   0.0 0.0 1388630.0, 1388630.0 -1.27
BXD12/TyJ m 1450699.0 0.0   1   0.0 0.0 1450699.0, 1450699.0 -1.1
BXD13/TyJ m 1567732.0 0.0   1   0.0 0.0 1567732.0, 1567732.0 -0.8
BXD14/TyJ m 1234302.0 0.0   1   0.0 0.0 1234302.0, 1234302.0 -1.67
BXD15/TyJ m 1587703.0 0.0   1   0.0 0.0 1587703.0, 1587703.0 -0.75
BXD18/TyJ m 1611038.0 0.0   1   0.0 0.0 1611038.0, 1611038.0 -0.69
BXD19/TyJ m 1431953.0 302356.0   2   213798.0 0.211 1218156.0, 1645751.0 -1.15
BXD1/TyJ m 1694310.0 0.0   1   0.0 0.0 1694310.0, 1694310.0 -0.47
BXD20/TyJ m 2084268.0 0.0   1   0.0 0.0 2084268.0, 2084268.0 0.55
BXD21/TyJ m 1369840.0 0.0   1   0.0 0.0 1369840.0, 1369840.0 -1.32
BXD22/TyJ m 2434327.0 0.0   1   0.0 0.0 2434327.0, 2434327.0 1.46
BXD24/TyJ m 1833720.0 0.0   1   0.0 0.0 1833720.0, 1833720.0 -0.11
BXD24/TyJ-Cep290rd16/J m 1767770.0 0.0   1   0.0 0.0 1767770.0, 1767770.0 -0.28
BXD28/TyJ m 1963897.0 278341.0   2   196817.0 0.142 1767080.0, 2160713.0 0.23
BXD29-Tlr4lps-2J/J m 1624436.0 0.0   1   0.0 0.0 1624436.0, 1624436.0 -0.65
BXD2/TyJ m 1833281.0 0.0   1   0.0 0.0 1833281.0, 1833281.0 -0.11
BXD32/TyJ m 1850658.0 0.0   1   0.0 0.0 1850658.0, 1850658.0 -0.06
BXD33/TyJ m 2053624.0 0.0   1   0.0 0.0 2053624.0, 2053624.0 0.47
BXD34/TyJ m 1975609.0 0.0   1   0.0 0.0 1975609.0, 1975609.0 0.27
BXD36/TyJ m 1517897.0 0.0   1   0.0 0.0 1517897.0, 1517897.0 -0.93
BXD38/TyJ m 1523280.0 0.0   1   0.0 0.0 1523280.0, 1523280.0 -0.92
BXD39/TyJ m 2309270.0 0.0   1   0.0 0.0 2309270.0, 2309270.0 1.14
BXD40/TyJ m 1806104.0 0.0   1   0.0 0.0 1806104.0, 1806104.0 -0.18
BXD42/TyJ m 1229796.0 0.0   1   0.0 0.0 1229796.0, 1229796.0 -1.68
BXD5/TyJ m 1826363.0 0.0   1   0.0 0.0 1826363.0, 1826363.0 -0.12
BXD6/TyJ m 1812888.0 0.0   1   0.0 0.0 1812888.0, 1812888.0 -0.16
BXD8/TyJ m 1393958.0 0.0   1   0.0 0.0 1393958.0, 1393958.0 -1.25
BXD9/TyJ m 1618054.0 0.0   1   0.0 0.0 1618054.0, 1618054.0 -0.67
BXH10/TyJ m 1119724.0 0.0   1   0.0 0.0 1119724.0, 1119724.0 -1.97
BXH19/TyJ m 2383543.0 0.0   1   0.0 0.0 2383543.0, 2383543.0 1.33
BXH20/KccJ m 2280844.0 0.0   1   0.0 0.0 2280844.0, 2280844.0 1.06
BXH22/KccJ m 1792744.0 0.0   1   0.0 0.0 1792744.0, 1792744.0 -0.21
BXH2/TyJ m 1610038.0 0.0   1   0.0 0.0 1610038.0, 1610038.0 -0.69
BXH4/TyJ m 1351718.0 77741.0   2   54971.0 0.0575 1296746.0, 1406689.0 -1.36
BXH6/TyJ m 1548207.0 0.0   1   0.0 0.0 1548207.0, 1548207.0 -0.85
BXH7/TyJ m 1886084.0 0.0   1   0.0 0.0 1886084.0, 1886084.0 0.03
BXH8/TyJ m 2249898.0 0.0   1   0.0 0.0 2249898.0, 2249898.0 0.98
BXH9/TyJ m 2085979.0 0.0   1   0.0 0.0 2085979.0, 2085979.0 0.55
C3H/HeJ m 1538708.0 144926.0   2   102478.0 0.0942 1436230.0, 1641186.0 -0.88
C57BL/6J m 1817763.0 113477.0   5 50748.0 0.0624 1658000.0, 1943337.0 -0.15
C57L/J m 1377081.0 0.0   1   0.0 0.0 1377081.0, 1377081.0 -1.3
C58/J m 2824708.0 0.0   1   0.0 0.0 2824708.0, 2824708.0 2.48
CAST/EiJ m 1676830.0 0.0   1   0.0 0.0 1676830.0, 1676830.0 -0.51
CBA/J m 1313973.0 0.0   1   0.0 0.0 1313973.0, 1313973.0 -1.46
CE/J m 1526875.0 0.0   1   0.0 0.0 1526875.0, 1526875.0 -0.91
CXB11/HiAJ m 1678727.0 428616.0   2   303077.0 0.255 1375650.0, 1981804.0 -0.51
CXB12/HiAJ m 1836565.0 213312.0   2   150834.0 0.116 1685731.0, 1987400.0 -0.1
CXB13/HiAJ m 2288931.0 227110.0   3 131122.0 0.0992 2029994.0, 2454354.0 1.08
CXB1/ByJ m 1991455.0 316687.0   3 182839.0 0.159 1683228.0, 2315974.0 0.31
CXB2/ByJ m 2340830.0 627267.0   3 362152.0 0.268 1713350.0, 2967882.0 1.22
CXB3/ByJ m 2136218.0 84812.0   2   59971.0 0.0397 2076247.0, 2196188.0 0.68
CXB4/ByJ m 1992836.0 83191.0   2   58825.0 0.0417 1934012.0, 2051661.0 0.31
CXB6/ByJ m 1676858.0 165254.0   3 95410.0 0.0985 1515681.0, 1845908.0 -0.51
CXB7/ByJ m 2186962.0 54939.0   2   38847.0 0.0251 2148115.0, 2225810.0 0.82
CXB8/HiAJ m 1854018.0 166127.0   3 95913.0 0.0896 1689259.0, 2021480.0 -0.05
CXB9/HiAJ m 1699282.0 513999.0   3 296758.0 0.302 1352361.0, 2289791.0 -0.46
DBA/2J m 1840959.0 76282.0   4 38141.0 0.0414 1732131.0, 1910342.0 -0.09
FVB/NJ m 3286346.0 0.0   1   0.0 0.0 3286346.0, 3286346.0 3.69
I/LnJ m 2229068.0 0.0   1   0.0 0.0 2229068.0, 2229068.0 0.93
KK/HlJ m 1463749.0 0.0   1   0.0 0.0 1463749.0, 1463749.0 -1.07
LG/J m 1755248.0 0.0   1   0.0 0.0 1755248.0, 1755248.0 -0.31
LP/J m 2134766.0 0.0   1   0.0 0.0 2134766.0, 2134766.0 0.68
MA/MyJ m 1892743.0 0.0   1   0.0 0.0 1892743.0, 1892743.0 0.05
NOD/ShiLtJ m 1659711.0 0.0   1   0.0 0.0 1659711.0, 1659711.0 -0.56
NON/ShiLtJ m 1681788.0 0.0   1   0.0 0.0 1681788.0, 1681788.0 -0.5
NZW/LacJ m 1264184.0 0.0   1   0.0 0.0 1264184.0, 1264184.0 -1.59
PL/J m 2240168.0 0.0   1   0.0 0.0 2240168.0, 2240168.0 0.96
RIIIS/J m 2454085.0 0.0   1   0.0 0.0 2454085.0, 2454085.0 1.51
SEA/GnJ m 1698146.0 0.0   1   0.0 0.0 1698146.0, 1698146.0 -0.46
SJL/J m 1620222.0 0.0   1   0.0 0.0 1620222.0, 1620222.0 -0.66
SM/J m 2006510.0 0.0   1   0.0 0.0 2006510.0, 2006510.0 0.35
SWR/J m 3020807.0 0.0   1   0.0 0.0 3020807.0, 3020807.0 2.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2431909.15 219230.4035 2877438.9337 1986379.3663
AXB19b/PgnJ m 2180335.65 219230.4035 2625865.4337 1734805.8663
AXB24/PgnJ m 1913904.15 219230.4035 2359433.9337 1468374.3663
BALB/cJ m 2051564.5667 179000.8749 2415338.1118 1687791.0216
BXA16/PgnJ m 1662310.5 219230.4035 2107840.2837 1216780.7163
BXD19/TyJ m 1431953.45 219230.4035 1877483.2337 986423.6663
BXD28/TyJ m 1963896.65 219230.4035 2409426.4337 1518366.8663
BXH4/TyJ m 1351717.65 219230.4035 1797247.4337 906187.8663
C3H/HeJ m 1538708.15 219230.4035 1984237.9337 1093178.3663
C57BL/6J m 1817763.42 138653.4815 2099541.1964 1535985.6436
CXB11/HiAJ m 1678726.9 219230.4035 2124256.6837 1233197.1163
CXB12/HiAJ m 1836565.45 219230.4035 2282095.2337 1391035.6663
CXB13/HiAJ m 2288931.2 179000.8749 2652704.7451 1925157.6549
CXB1/ByJ m 1991454.7667 179000.8749 2355228.3118 1627681.2216
CXB2/ByJ m 2340830.3667 179000.8749 2704603.9118 1977056.8216
CXB3/ByJ m 2136217.55 219230.4035 2581747.3337 1690687.7663
CXB4/ByJ m 1992836.45 219230.4035 2438366.2337 1547306.6663
CXB6/ByJ m 1676857.9 179000.8749 2040631.4451 1313084.3549
CXB7/ByJ m 2186962.4 219230.4035 2632492.1837 1741432.6163
CXB8/HiAJ m 1854018.1667 179000.8749 2217791.7118 1490244.6216
CXB9/HiAJ m 1699282.1 179000.8749 2063055.6451 1335508.5549
DBA/2J m 1840958.725 155019.3049 2155995.8563 1525921.5937




  GWAS USING LINEAR MIXED MODELS