Phenotype measure:   HMDPpheno8   POG

ID, description, units MPD:50379   POG   liver 1-palmitoylglycerol (1-monopalmitin) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver 1-palmitoylglycerol (1-monopalmitin) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means599544   None
Median of the strain means562550   None
SD of the strain means± 279285
Coefficient of variation (CV)0.466
Min–max range of strain means340016   –   3061544   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 17370827589665.5 827182266174.547 1.0152 0.4724
Residuals 34 27702319180403.1 814774093541.269


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 521388.0 0.0   1   0.0 0.0 521388.0, 521388.0 -0.28
A/J m 580164.0 68190.0   2   48218.0 0.118 531946.0, 628382.0 -0.07
AKR/J m 500692.0 0.0   1   0.0 0.0 500692.0, 500692.0 -0.35
AXB10/PgnJ m 567734.0 0.0   1   0.0 0.0 567734.0, 567734.0 -0.11
AXB12/PgnJ m 417913.0 0.0   1   0.0 0.0 417913.0, 417913.0 -0.65
AXB13/PgnJ m 737587.0 0.0   1   0.0 0.0 737587.0, 737587.0 0.49
AXB15/PgnJ m 631887.0 0.0   1   0.0 0.0 631887.0, 631887.0 0.12
AXB19a/PgnJ m 343107.0 0.0   1   0.0 0.0 343107.0, 343107.0 -0.92
AXB19b/PgnJ m 547707.0 41732.0   2   29509.0 0.0762 518198.0, 577216.0 -0.19
AXB19/PgnJ m 421675.0 0.0   1   0.0 0.0 421675.0, 421675.0 -0.64
AXB1/PgnJ m 398530.0 0.0   1   0.0 0.0 398530.0, 398530.0 -0.72
AXB23/PgnJ m 677148.0 0.0   1   0.0 0.0 677148.0, 677148.0 0.28
AXB24/PgnJ m 408598.0 9584.0   2   6777.0 0.0235 401821.0, 415374.0 -0.68
AXB2/PgnJ m 570749.0 0.0   1   0.0 0.0 570749.0, 570749.0 -0.1
AXB4/PgnJ m 530405.0 0.0   1   0.0 0.0 530405.0, 530405.0 -0.25
AXB5/PgnJ m 518426.0 0.0   1   0.0 0.0 518426.0, 518426.0 -0.29
AXB6/PgnJ m 563959.0 0.0   1   0.0 0.0 563959.0, 563959.0 -0.13
AXB8/PgnJ m 552257.0 0.0   1   0.0 0.0 552257.0, 552257.0 -0.17
BALB/cJ m 621232.0 24592.0   3 14198.0 0.0396 593106.0, 638678.0 0.08
BTBR T+ Itpr3tf/J m 524669.0 0.0   1   0.0 0.0 524669.0, 524669.0 -0.27
BUB/BnJ m 534209.0 0.0   1   0.0 0.0 534209.0, 534209.0 -0.23
BXA11/PgnJ m 653961.0 0.0   1   0.0 0.0 653961.0, 653961.0 0.19
BXA12/PgnJ m 351653.0 0.0   1   0.0 0.0 351653.0, 351653.0 -0.89
BXA13/PgnJ m 536117.0 0.0   1   0.0 0.0 536117.0, 536117.0 -0.23
BXA14/PgnJ m 465385.0 0.0   1   0.0 0.0 465385.0, 465385.0 -0.48
BXA16/PgnJ m 509203.0 36886.0   2   26083.0 0.0724 483120.0, 535285.0 -0.32
BXA1/PgnJ m 586112.0 0.0   1   0.0 0.0 586112.0, 586112.0 -0.05
BXA24/PgnJ m 464761.0 0.0   1   0.0 0.0 464761.0, 464761.0 -0.48
BXA25/PgnJ m 601768.0 0.0   1   0.0 0.0 601768.0, 601768.0 0.01
BXA26/PgnJ m 950596.0 0.0   1   0.0 0.0 950596.0, 950596.0 1.26
BXA2/PgnJ m 670095.0 0.0   1   0.0 0.0 670095.0, 670095.0 0.25
BXA4/PgnJ m 362743.0 0.0   1   0.0 0.0 362743.0, 362743.0 -0.85
BXA7/PgnJ m 698384.0 0.0   1   0.0 0.0 698384.0, 698384.0 0.35
BXA8/PgnJ m 614534.0 0.0   1   0.0 0.0 614534.0, 614534.0 0.05
BXD11/TyJ m 574119.0 0.0   1   0.0 0.0 574119.0, 574119.0 -0.09
BXD12/TyJ m 626247.0 0.0   1   0.0 0.0 626247.0, 626247.0 0.1
BXD13/TyJ m 658930.0 0.0   1   0.0 0.0 658930.0, 658930.0 0.21
BXD14/TyJ m 380170.0 0.0   1   0.0 0.0 380170.0, 380170.0 -0.79
BXD15/TyJ m 479664.0 0.0   1   0.0 0.0 479664.0, 479664.0 -0.43
BXD18/TyJ m 606444.0 0.0   1   0.0 0.0 606444.0, 606444.0 0.02
BXD19/TyJ m 600384.0 243966.0   2   172510.0 0.406 427874.0, 772895.0 0.0
BXD1/TyJ m 615191.0 0.0   1   0.0 0.0 615191.0, 615191.0 0.06
BXD20/TyJ m 553214.0 0.0   1   0.0 0.0 553214.0, 553214.0 -0.17
BXD21/TyJ m 475498.0 0.0   1   0.0 0.0 475498.0, 475498.0 -0.44
BXD22/TyJ m 340016.0 0.0   1   0.0 0.0 340016.0, 340016.0 -0.93
BXD24/TyJ m 613116.0 0.0   1   0.0 0.0 613116.0, 613116.0 0.05
BXD24/TyJ-Cep290rd16/J m 460637.0 0.0   1   0.0 0.0 460637.0, 460637.0 -0.5
BXD28/TyJ m 775597.0 292582.0   2   206887.0 0.377 568710.0, 982484.0 0.63
BXD29-Tlr4lps-2J/J m 781212.0 0.0   1   0.0 0.0 781212.0, 781212.0 0.65
BXD2/TyJ m 530069.0 0.0   1   0.0 0.0 530069.0, 530069.0 -0.25
BXD32/TyJ m 480394.0 0.0   1   0.0 0.0 480394.0, 480394.0 -0.43
BXD33/TyJ m 396670.0 0.0   1   0.0 0.0 396670.0, 396670.0 -0.73
BXD34/TyJ m 614272.0 0.0   1   0.0 0.0 614272.0, 614272.0 0.05
BXD36/TyJ m 480360.0 0.0   1   0.0 0.0 480360.0, 480360.0 -0.43
BXD38/TyJ m 611229.0 0.0   1   0.0 0.0 611229.0, 611229.0 0.04
BXD39/TyJ m 728609.0 0.0   1   0.0 0.0 728609.0, 728609.0 0.46
BXD40/TyJ m 591487.0 0.0   1   0.0 0.0 591487.0, 591487.0 -0.03
BXD42/TyJ m 507023.0 0.0   1   0.0 0.0 507023.0, 507023.0 -0.33
BXD5/TyJ m 651046.0 0.0   1   0.0 0.0 651046.0, 651046.0 0.18
BXD6/TyJ m 376122.0 0.0   1   0.0 0.0 376122.0, 376122.0 -0.8
BXD8/TyJ m 416398.0 0.0   1   0.0 0.0 416398.0, 416398.0 -0.66
BXD9/TyJ m 561574.0 0.0   1   0.0 0.0 561574.0, 561574.0 -0.14
BXH10/TyJ m 357598.0 0.0   1   0.0 0.0 357598.0, 357598.0 -0.87
BXH19/TyJ m 435256.0 0.0   1   0.0 0.0 435256.0, 435256.0 -0.59
BXH20/KccJ m 921161.0 0.0   1   0.0 0.0 921161.0, 921161.0 1.15
BXH22/KccJ m 781788.0 0.0   1   0.0 0.0 781788.0, 781788.0 0.65
BXH2/TyJ m 521835.0 0.0   1   0.0 0.0 521835.0, 521835.0 -0.28
BXH4/TyJ m 560055.0 107745.0   2   76187.0 0.192 483868.0, 636242.0 -0.14
BXH6/TyJ m 607188.0 0.0   1   0.0 0.0 607188.0, 607188.0 0.03
BXH7/TyJ m 537988.0 0.0   1   0.0 0.0 537988.0, 537988.0 -0.22
BXH8/TyJ m 694744.0 0.0   1   0.0 0.0 694744.0, 694744.0 0.34
BXH9/TyJ m 535412.0 0.0   1   0.0 0.0 535412.0, 535412.0 -0.23
C3H/HeJ m 612371.0 196688.0   2   139080.0 0.321 473292.0, 751451.0 0.05
C57BL/6J m 718176.0 194182.0   5 86841.0 0.27 534116.0, 956494.0 0.42
C57L/J m 475983.0 0.0   1   0.0 0.0 475983.0, 475983.0 -0.44
C58/J m 467856.0 0.0   1   0.0 0.0 467856.0, 467856.0 -0.47
CAST/EiJ m 502562.0 0.0   1   0.0 0.0 502562.0, 502562.0 -0.35
CBA/J m 625528.0 0.0   1   0.0 0.0 625528.0, 625528.0 0.09
CE/J m 420081.0 0.0   1   0.0 0.0 420081.0, 420081.0 -0.64
CXB11/HiAJ m 578392.0 95640.0   2   67628.0 0.165 510764.0, 646020.0 -0.08
CXB12/HiAJ m 1020258.0 721973.0   2   510512.0 0.708 509746.0, 1530770.0 1.51
CXB13/HiAJ m 704827.0 182674.0   3 105467.0 0.259 561940.0, 910648.0 0.38
CXB1/ByJ m 742185.0 207546.0   3 119827.0 0.28 609661.0, 981373.0 0.51
CXB2/ByJ m 1000965.0 738708.0   3 426493.0 0.738 435380.0, 1836727.0 1.44
CXB3/ByJ m 634055.0 127573.0   2   90207.0 0.201 543848.0, 724263.0 0.12
CXB4/ByJ m 595104.0 224000.0   2   158392.0 0.376 436712.0, 753496.0 -0.02
CXB6/ByJ m 815410.0 361913.0   3 208951.0 0.444 569165.0, 1230943.0 0.77
CXB7/ByJ m 706662.0 108554.0   2   76759.0 0.154 629903.0, 783421.0 0.38
CXB8/HiAJ m 752470.0 246863.0   3 142526.0 0.328 564955.0, 1032157.0 0.55
CXB9/HiAJ m 3061544.0 3540072.0   3 2043861.0 1.16 849998.0, 7144548.0 8.82
DBA/2J m 478167.0 123917.0   4 61959.0 0.259 352516.0, 603256.0 -0.43
FVB/NJ m 352706.0 0.0   1   0.0 0.0 352706.0, 352706.0 -0.88
I/LnJ m 504529.0 0.0   1   0.0 0.0 504529.0, 504529.0 -0.34
KK/HlJ m 999848.0 0.0   1   0.0 0.0 999848.0, 999848.0 1.43
LG/J m 527610.0 0.0   1   0.0 0.0 527610.0, 527610.0 -0.26
LP/J m 382458.0 0.0   1   0.0 0.0 382458.0, 382458.0 -0.78
MA/MyJ m 537296.0 0.0   1   0.0 0.0 537296.0, 537296.0 -0.22
NOD/ShiLtJ m 601977.0 0.0   1   0.0 0.0 601977.0, 601977.0 0.01
NON/ShiLtJ m 672735.0 0.0   1   0.0 0.0 672735.0, 672735.0 0.26
NZW/LacJ m 563525.0 0.0   1   0.0 0.0 563525.0, 563525.0 -0.13
PL/J m 555269.0 0.0   1   0.0 0.0 555269.0, 555269.0 -0.16
RIIIS/J m 571272.0 0.0   1   0.0 0.0 571272.0, 571272.0 -0.1
SEA/GnJ m 544124.0 0.0   1   0.0 0.0 544124.0, 544124.0 -0.2
SJL/J m 516657.0 0.0   1   0.0 0.0 516657.0, 516657.0 -0.3
SM/J m 683166.0 0.0   1   0.0 0.0 683166.0, 683166.0 0.3
SWR/J m 551850.0 0.0   1   0.0 0.0 551850.0, 551850.0 -0.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 580163.9 638268.7888 1877282.1415 0.0
AXB19b/PgnJ m 547707.25 638268.7888 1844825.4915 0.0
AXB24/PgnJ m 408597.75 638268.7888 1705715.9915 0.0
BALB/cJ m 621232.3333 521144.2838 1680324.9426 0.0
BXA16/PgnJ m 509202.75 638268.7888 1806320.9915 0.0
BXD19/TyJ m 600384.25 638268.7888 1897502.4915 0.0
BXD28/TyJ m 775596.85 638268.7888 2072715.0915 0.0
BXH4/TyJ m 560054.75 638268.7888 1857172.9915 0.0
C3H/HeJ m 612371.05 638268.7888 1909489.2915 0.0
C57BL/6J m 718175.94 403676.6264 1538545.5476 0.0
CXB11/HiAJ m 578392.0 638268.7888 1875510.2415 0.0
CXB12/HiAJ m 1020257.8 638268.7888 2317376.0415 0.0
CXB13/HiAJ m 704826.6 521144.2838 1763919.2093 0.0
CXB1/ByJ m 742185.4333 521144.2838 1801278.0426 0.0
CXB2/ByJ m 1000965.2333 521144.2838 2060057.8426 0.0
CXB3/ByJ m 634055.45 638268.7888 1931173.6915 0.0
CXB4/ByJ m 595104.1 638268.7888 1892222.3415 0.0
CXB6/ByJ m 815409.8 521144.2838 1874502.4093 0.0
CXB7/ByJ m 706661.8 638268.7888 2003780.0415 0.0
CXB8/HiAJ m 752470.3333 521144.2838 1811562.9426 0.0
CXB9/HiAJ m 3061544.4333 521144.2838 4120637.0426 2002451.8241
DBA/2J m 478167.35 451324.1888 1395368.4546 0.0




  GWAS USING LINEAR MIXED MODELS