Phenotype measure:   HMDPpheno8   pelargonate

ID, description, units MPD:50375   pelargonate   liver pelargonate (9:0) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver pelargonate (9:0) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means86509   None
Median of the strain means84362   None
SD of the strain means± 18134
Coefficient of variation (CV)0.210
Min–max range of strain means49250   –   137574   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 7142249628.8725 340107125.1844 1.7443 0.0725
Residuals 34 6629346680.0247 194980784.7066


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 115834.0 0.0   1   0.0 0.0 115834.0, 115834.0 1.62
A/J m 92265.0 15092.0   2   10671.0 0.164 81594.0, 102937.0 0.32
AKR/J m 91510.0 0.0   1   0.0 0.0 91510.0, 91510.0 0.28
AXB10/PgnJ m 75236.0 0.0   1   0.0 0.0 75236.0, 75236.0 -0.62
AXB12/PgnJ m 69619.0 0.0   1   0.0 0.0 69619.0, 69619.0 -0.93
AXB13/PgnJ m 98523.0 0.0   1   0.0 0.0 98523.0, 98523.0 0.66
AXB15/PgnJ m 105966.0 0.0   1   0.0 0.0 105966.0, 105966.0 1.07
AXB19a/PgnJ m 83821.0 0.0   1   0.0 0.0 83821.0, 83821.0 -0.15
AXB19b/PgnJ m 97064.0 19043.0   2   13465.0 0.196 83599.0, 110530.0 0.58
AXB19/PgnJ m 93402.0 0.0   1   0.0 0.0 93402.0, 93402.0 0.38
AXB1/PgnJ m 103754.0 0.0   1   0.0 0.0 103754.0, 103754.0 0.95
AXB23/PgnJ m 96816.0 0.0   1   0.0 0.0 96816.0, 96816.0 0.57
AXB24/PgnJ m 58480.0 12898.0   2   9120.0 0.221 49360.0, 67600.0 -1.55
AXB2/PgnJ m 116189.0 0.0   1   0.0 0.0 116189.0, 116189.0 1.64
AXB4/PgnJ m 89385.0 0.0   1   0.0 0.0 89385.0, 89385.0 0.16
AXB5/PgnJ m 68685.0 0.0   1   0.0 0.0 68685.0, 68685.0 -0.98
AXB6/PgnJ m 87964.0 0.0   1   0.0 0.0 87964.0, 87964.0 0.08
AXB8/PgnJ m 66624.0 0.0   1   0.0 0.0 66624.0, 66624.0 -1.1
BALB/cJ m 90369.0 20551.0   3 11865.0 0.227 77805.0, 114085.0 0.21
BTBR T+ Itpr3tf/J m 63464.0 0.0   1   0.0 0.0 63464.0, 63464.0 -1.27
BUB/BnJ m 137574.0 0.0   1   0.0 0.0 137574.0, 137574.0 2.82
BXA11/PgnJ m 86084.0 0.0   1   0.0 0.0 86084.0, 86084.0 -0.02
BXA12/PgnJ m 90087.0 0.0   1   0.0 0.0 90087.0, 90087.0 0.2
BXA13/PgnJ m 84576.0 0.0   1   0.0 0.0 84576.0, 84576.0 -0.11
BXA14/PgnJ m 49250.0 0.0   1   0.0 0.0 49250.0, 49250.0 -2.05
BXA16/PgnJ m 75908.0 2197.0   2   1554.0 0.0289 74354.0, 77462.0 -0.58
BXA1/PgnJ m 68932.0 0.0   1   0.0 0.0 68932.0, 68932.0 -0.97
BXA24/PgnJ m 87402.0 0.0   1   0.0 0.0 87402.0, 87402.0 0.05
BXA25/PgnJ m 67490.0 0.0   1   0.0 0.0 67490.0, 67490.0 -1.05
BXA26/PgnJ m 100031.0 0.0   1   0.0 0.0 100031.0, 100031.0 0.75
BXA2/PgnJ m 64043.0 0.0   1   0.0 0.0 64043.0, 64043.0 -1.24
BXA4/PgnJ m 69760.0 0.0   1   0.0 0.0 69760.0, 69760.0 -0.92
BXA7/PgnJ m 84148.0 0.0   1   0.0 0.0 84148.0, 84148.0 -0.13
BXA8/PgnJ m 78158.0 0.0   1   0.0 0.0 78158.0, 78158.0 -0.46
BXD11/TyJ m 108224.0 0.0   1   0.0 0.0 108224.0, 108224.0 1.2
BXD12/TyJ m 122442.0 0.0   1   0.0 0.0 122442.0, 122442.0 1.98
BXD13/TyJ m 64124.0 0.0   1   0.0 0.0 64124.0, 64124.0 -1.23
BXD14/TyJ m 65635.0 0.0   1   0.0 0.0 65635.0, 65635.0 -1.15
BXD15/TyJ m 68294.0 0.0   1   0.0 0.0 68294.0, 68294.0 -1.0
BXD18/TyJ m 78878.0 0.0   1   0.0 0.0 78878.0, 78878.0 -0.42
BXD19/TyJ m 74420.0 5060.0   2   3578.0 0.068 70842.0, 77998.0 -0.67
BXD1/TyJ m 72700.0 0.0   1   0.0 0.0 72700.0, 72700.0 -0.76
BXD20/TyJ m 69069.0 0.0   1   0.0 0.0 69069.0, 69069.0 -0.96
BXD21/TyJ m 64476.0 0.0   1   0.0 0.0 64476.0, 64476.0 -1.21
BXD22/TyJ m 70895.0 0.0   1   0.0 0.0 70895.0, 70895.0 -0.86
BXD24/TyJ m 86042.0 0.0   1   0.0 0.0 86042.0, 86042.0 -0.03
BXD24/TyJ-Cep290rd16/J m 80328.0 0.0   1   0.0 0.0 80328.0, 80328.0 -0.34
BXD28/TyJ m 72048.0 1987.0   2   1405.0 0.0276 70643.0, 73453.0 -0.8
BXD29-Tlr4lps-2J/J m 113796.0 0.0   1   0.0 0.0 113796.0, 113796.0 1.5
BXD2/TyJ m 68403.0 0.0   1   0.0 0.0 68403.0, 68403.0 -1.0
BXD32/TyJ m 82172.0 0.0   1   0.0 0.0 82172.0, 82172.0 -0.24
BXD33/TyJ m 74194.0 0.0   1   0.0 0.0 74194.0, 74194.0 -0.68
BXD34/TyJ m 124175.0 0.0   1   0.0 0.0 124175.0, 124175.0 2.08
BXD36/TyJ m 75442.0 0.0   1   0.0 0.0 75442.0, 75442.0 -0.61
BXD38/TyJ m 85328.0 0.0   1   0.0 0.0 85328.0, 85328.0 -0.07
BXD39/TyJ m 70476.0 0.0   1   0.0 0.0 70476.0, 70476.0 -0.88
BXD40/TyJ m 106757.0 0.0   1   0.0 0.0 106757.0, 106757.0 1.12
BXD42/TyJ m 73138.0 0.0   1   0.0 0.0 73138.0, 73138.0 -0.74
BXD5/TyJ m 73651.0 0.0   1   0.0 0.0 73651.0, 73651.0 -0.71
BXD6/TyJ m 67196.0 0.0   1   0.0 0.0 67196.0, 67196.0 -1.06
BXD8/TyJ m 81845.0 0.0   1   0.0 0.0 81845.0, 81845.0 -0.26
BXD9/TyJ m 73638.0 0.0   1   0.0 0.0 73638.0, 73638.0 -0.71
BXH10/TyJ m 104193.0 0.0   1   0.0 0.0 104193.0, 104193.0 0.98
BXH19/TyJ m 74497.0 0.0   1   0.0 0.0 74497.0, 74497.0 -0.66
BXH20/KccJ m 76970.0 0.0   1   0.0 0.0 76970.0, 76970.0 -0.53
BXH22/KccJ m 104551.0 0.0   1   0.0 0.0 104551.0, 104551.0 0.99
BXH2/TyJ m 77606.0 0.0   1   0.0 0.0 77606.0, 77606.0 -0.49
BXH4/TyJ m 77059.0 7545.0   2   5335.0 0.0979 71725.0, 82394.0 -0.52
BXH6/TyJ m 57956.0 0.0   1   0.0 0.0 57956.0, 57956.0 -1.57
BXH7/TyJ m 77216.0 0.0   1   0.0 0.0 77216.0, 77216.0 -0.51
BXH8/TyJ m 77722.0 0.0   1   0.0 0.0 77722.0, 77722.0 -0.48
BXH9/TyJ m 73301.0 0.0   1   0.0 0.0 73301.0, 73301.0 -0.73
C3H/HeJ m 83495.0 18350.0   2   12975.0 0.22 70519.0, 96470.0 -0.17
C57BL/6J m 100477.0 5288.0   5 2365.0 0.0526 92898.0, 107602.0 0.77
C57L/J m 97599.0 0.0   1   0.0 0.0 97599.0, 97599.0 0.61
C58/J m 63689.0 0.0   1   0.0 0.0 63689.0, 63689.0 -1.26
CAST/EiJ m 82810.0 0.0   1   0.0 0.0 82810.0, 82810.0 -0.2
CBA/J m 102297.0 0.0   1   0.0 0.0 102297.0, 102297.0 0.87
CE/J m 119167.0 0.0   1   0.0 0.0 119167.0, 119167.0 1.8
CXB11/HiAJ m 91131.0 9519.0   2   6731.0 0.104 84399.0, 97862.0 0.25
CXB12/HiAJ m 76826.0 6406.0   2   4530.0 0.0834 72297.0, 81356.0 -0.53
CXB13/HiAJ m 86200.0 21636.0   3 12491.0 0.251 66232.0, 109186.0 -0.02
CXB1/ByJ m 88456.0 23499.0   3 13567.0 0.266 74161.0, 115577.0 0.11
CXB2/ByJ m 99411.0 21970.0   3 12685.0 0.221 77666.0, 121600.0 0.71
CXB3/ByJ m 76409.0 3032.0   2   2144.0 0.0397 74265.0, 78553.0 -0.56
CXB4/ByJ m 63661.0 7350.0   2   5197.0 0.115 58464.0, 68858.0 -1.26
CXB6/ByJ m 99316.0 10970.0   3 6334.0 0.11 87973.0, 109871.0 0.71
CXB7/ByJ m 85204.0 12889.0   2   9114.0 0.151 76090.0, 94318.0 -0.07
CXB8/HiAJ m 74725.0 8091.0   3 4672.0 0.108 65626.0, 81114.0 -0.65
CXB9/HiAJ m 94791.0 3873.0   3 2236.0 0.0409 90697.0, 98398.0 0.46
DBA/2J m 89836.0 15485.0   4 7743.0 0.172 69193.0, 104546.0 0.18
FVB/NJ m 93672.0 0.0   1   0.0 0.0 93672.0, 93672.0 0.39
I/LnJ m 109514.0 0.0   1   0.0 0.0 109514.0, 109514.0 1.27
KK/HlJ m 96313.0 0.0   1   0.0 0.0 96313.0, 96313.0 0.54
LG/J m 89725.0 0.0   1   0.0 0.0 89725.0, 89725.0 0.18
LP/J m 70670.0 0.0   1   0.0 0.0 70670.0, 70670.0 -0.87
MA/MyJ m 113210.0 0.0   1   0.0 0.0 113210.0, 113210.0 1.47
NOD/ShiLtJ m 130492.0 0.0   1   0.0 0.0 130492.0, 130492.0 2.43
NON/ShiLtJ m 92564.0 0.0   1   0.0 0.0 92564.0, 92564.0 0.33
NZW/LacJ m 99342.0 0.0   1   0.0 0.0 99342.0, 99342.0 0.71
PL/J m 129267.0 0.0   1   0.0 0.0 129267.0, 129267.0 2.36
RIIIS/J m 93528.0 0.0   1   0.0 0.0 93528.0, 93528.0 0.39
SEA/GnJ m 104020.0 0.0   1   0.0 0.0 104020.0, 104020.0 0.97
SJL/J m 65760.0 0.0   1   0.0 0.0 65760.0, 65760.0 -1.14
SM/J m 132242.0 0.0   1   0.0 0.0 132242.0, 132242.0 2.52
SWR/J m 96876.0 0.0   1   0.0 0.0 96876.0, 96876.0 0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 92265.35 9873.7223 112331.168 72199.532
AXB19b/PgnJ m 97064.25 9873.7223 117130.068 76998.432
AXB24/PgnJ m 58479.8 9873.7223 78545.618 38413.982
BALB/cJ m 90368.6 8061.8605 106752.2718 73984.9282
BXA16/PgnJ m 75908.0 9873.7223 95973.818 55842.182
BXD19/TyJ m 74420.1 9873.7223 94485.918 54354.282
BXD28/TyJ m 72048.2 9873.7223 92114.018 51982.382
BXH4/TyJ m 77059.45 9873.7223 97125.268 56993.632
C3H/HeJ m 83494.65 9873.7223 103560.468 63428.832
C57BL/6J m 100477.48 6244.6903 113168.2176 87786.7424
CXB11/HiAJ m 91130.6 9873.7223 111196.418 71064.782
CXB12/HiAJ m 76826.5 9873.7223 96892.318 56760.682
CXB13/HiAJ m 86200.3333 8061.8605 102584.0051 69816.6616
CXB1/ByJ m 88455.6667 8061.8605 104839.3384 72071.9949
CXB2/ByJ m 99411.1 8061.8605 115794.7718 83027.4282
CXB3/ByJ m 76408.9 9873.7223 96474.718 56343.082
CXB4/ByJ m 63660.65 9873.7223 83726.468 43594.832
CXB6/ByJ m 99315.5667 8061.8605 115699.2384 82931.8949
CXB7/ByJ m 85203.95 9873.7223 105269.768 65138.132
CXB8/HiAJ m 74724.7667 8061.8605 91108.4384 58341.0949
CXB9/HiAJ m 94791.1 8061.8605 111174.7718 78407.4282
DBA/2J m 89836.0 6981.776 104024.676 75647.324




  GWAS USING LINEAR MIXED MODELS