Phenotype measure:   HMDPpheno8   caprate

ID, description, units MPD:50372   caprate   liver caprate (10:0) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver caprate (10:0) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means42201   None
Median of the strain means41888   None
SD of the strain means± 8893
Coefficient of variation (CV)0.211
Min–max range of strain means24149   –   79054   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1504746847.8339 71654611.8016 1.0195 0.4682
Residuals 34 2389749368.9397 70286746.1453


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 49241.0 0.0   1   0.0 0.0 49241.0, 49241.0 0.79
A/J m 41962.0 2200.0   2   1556.0 0.0524 40406.0, 43518.0 -0.03
AKR/J m 45969.0 0.0   1   0.0 0.0 45969.0, 45969.0 0.42
AXB10/PgnJ m 36387.0 0.0   1   0.0 0.0 36387.0, 36387.0 -0.65
AXB12/PgnJ m 44012.0 0.0   1   0.0 0.0 44012.0, 44012.0 0.2
AXB13/PgnJ m 46669.0 0.0   1   0.0 0.0 46669.0, 46669.0 0.5
AXB15/PgnJ m 53157.0 0.0   1   0.0 0.0 53157.0, 53157.0 1.23
AXB19a/PgnJ m 33603.0 0.0   1   0.0 0.0 33603.0, 33603.0 -0.97
AXB19b/PgnJ m 46249.0 1375.0   2   972.0 0.0297 45277.0, 47222.0 0.46
AXB19/PgnJ m 40764.0 0.0   1   0.0 0.0 40764.0, 40764.0 -0.16
AXB1/PgnJ m 47680.0 0.0   1   0.0 0.0 47680.0, 47680.0 0.62
AXB23/PgnJ m 36384.0 0.0   1   0.0 0.0 36384.0, 36384.0 -0.65
AXB24/PgnJ m 34091.0 14110.0   2   9977.0 0.414 24113.0, 44068.0 -0.91
AXB2/PgnJ m 51509.0 0.0   1   0.0 0.0 51509.0, 51509.0 1.05
AXB4/PgnJ m 28061.0 0.0   1   0.0 0.0 28061.0, 28061.0 -1.59
AXB5/PgnJ m 33382.0 0.0   1   0.0 0.0 33382.0, 33382.0 -0.99
AXB6/PgnJ m 47006.0 0.0   1   0.0 0.0 47006.0, 47006.0 0.54
AXB8/PgnJ m 45260.0 0.0   1   0.0 0.0 45260.0, 45260.0 0.34
BALB/cJ m 46235.0 12394.0   3 7155.0 0.268 38957.0, 60545.0 0.45
BTBR T+ Itpr3tf/J m 29727.0 0.0   1   0.0 0.0 29727.0, 29727.0 -1.4
BUB/BnJ m 55098.0 0.0   1   0.0 0.0 55098.0, 55098.0 1.45
BXA11/PgnJ m 41774.0 0.0   1   0.0 0.0 41774.0, 41774.0 -0.05
BXA12/PgnJ m 46899.0 0.0   1   0.0 0.0 46899.0, 46899.0 0.53
BXA13/PgnJ m 44620.0 0.0   1   0.0 0.0 44620.0, 44620.0 0.27
BXA14/PgnJ m 24149.0 0.0   1   0.0 0.0 24149.0, 24149.0 -2.03
BXA16/PgnJ m 36169.0 6474.0   2   4578.0 0.179 31591.0, 40746.0 -0.68
BXA1/PgnJ m 30088.0 0.0   1   0.0 0.0 30088.0, 30088.0 -1.36
BXA24/PgnJ m 43736.0 0.0   1   0.0 0.0 43736.0, 43736.0 0.17
BXA25/PgnJ m 37028.0 0.0   1   0.0 0.0 37028.0, 37028.0 -0.58
BXA26/PgnJ m 47860.0 0.0   1   0.0 0.0 47860.0, 47860.0 0.64
BXA2/PgnJ m 35010.0 0.0   1   0.0 0.0 35010.0, 35010.0 -0.81
BXA4/PgnJ m 29420.0 0.0   1   0.0 0.0 29420.0, 29420.0 -1.44
BXA7/PgnJ m 36558.0 0.0   1   0.0 0.0 36558.0, 36558.0 -0.63
BXA8/PgnJ m 39863.0 0.0   1   0.0 0.0 39863.0, 39863.0 -0.26
BXD11/TyJ m 58641.0 0.0   1   0.0 0.0 58641.0, 58641.0 1.85
BXD12/TyJ m 45640.0 0.0   1   0.0 0.0 45640.0, 45640.0 0.39
BXD13/TyJ m 35080.0 0.0   1   0.0 0.0 35080.0, 35080.0 -0.8
BXD14/TyJ m 34950.0 0.0   1   0.0 0.0 34950.0, 34950.0 -0.82
BXD15/TyJ m 37052.0 0.0   1   0.0 0.0 37052.0, 37052.0 -0.58
BXD18/TyJ m 41954.0 0.0   1   0.0 0.0 41954.0, 41954.0 -0.03
BXD19/TyJ m 41729.0 3.89   2   2.75 9.31995e-05 41726.0, 41731.0 -0.05
BXD1/TyJ m 37597.0 0.0   1   0.0 0.0 37597.0, 37597.0 -0.52
BXD20/TyJ m 29413.0 0.0   1   0.0 0.0 29413.0, 29413.0 -1.44
BXD21/TyJ m 35943.0 0.0   1   0.0 0.0 35943.0, 35943.0 -0.7
BXD22/TyJ m 35460.0 0.0   1   0.0 0.0 35460.0, 35460.0 -0.76
BXD24/TyJ m 41447.0 0.0   1   0.0 0.0 41447.0, 41447.0 -0.08
BXD24/TyJ-Cep290rd16/J m 37284.0 0.0   1   0.0 0.0 37284.0, 37284.0 -0.55
BXD28/TyJ m 40613.0 8969.0   2   6342.0 0.221 34271.0, 46955.0 -0.18
BXD29-Tlr4lps-2J/J m 49535.0 0.0   1   0.0 0.0 49535.0, 49535.0 0.82
BXD2/TyJ m 33013.0 0.0   1   0.0 0.0 33013.0, 33013.0 -1.03
BXD32/TyJ m 36535.0 0.0   1   0.0 0.0 36535.0, 36535.0 -0.64
BXD33/TyJ m 39959.0 0.0   1   0.0 0.0 39959.0, 39959.0 -0.25
BXD34/TyJ m 54728.0 0.0   1   0.0 0.0 54728.0, 54728.0 1.41
BXD36/TyJ m 39394.0 0.0   1   0.0 0.0 39394.0, 39394.0 -0.32
BXD38/TyJ m 46873.0 0.0   1   0.0 0.0 46873.0, 46873.0 0.53
BXD39/TyJ m 32373.0 0.0   1   0.0 0.0 32373.0, 32373.0 -1.11
BXD40/TyJ m 50690.0 0.0   1   0.0 0.0 50690.0, 50690.0 0.95
BXD42/TyJ m 35112.0 0.0   1   0.0 0.0 35112.0, 35112.0 -0.8
BXD5/TyJ m 41734.0 0.0   1   0.0 0.0 41734.0, 41734.0 -0.05
BXD6/TyJ m 40096.0 0.0   1   0.0 0.0 40096.0, 40096.0 -0.24
BXD8/TyJ m 28352.0 0.0   1   0.0 0.0 28352.0, 28352.0 -1.56
BXD9/TyJ m 40457.0 0.0   1   0.0 0.0 40457.0, 40457.0 -0.2
BXH10/TyJ m 41912.0 0.0   1   0.0 0.0 41912.0, 41912.0 -0.03
BXH19/TyJ m 31628.0 0.0   1   0.0 0.0 31628.0, 31628.0 -1.19
BXH20/KccJ m 36262.0 0.0   1   0.0 0.0 36262.0, 36262.0 -0.67
BXH22/KccJ m 46532.0 0.0   1   0.0 0.0 46532.0, 46532.0 0.49
BXH2/TyJ m 31845.0 0.0   1   0.0 0.0 31845.0, 31845.0 -1.16
BXH4/TyJ m 42874.0 11700.0   2   8273.0 0.273 34601.0, 51147.0 0.08
BXH6/TyJ m 26003.0 0.0   1   0.0 0.0 26003.0, 26003.0 -1.82
BXH7/TyJ m 48928.0 0.0   1   0.0 0.0 48928.0, 48928.0 0.76
BXH8/TyJ m 41934.0 0.0   1   0.0 0.0 41934.0, 41934.0 -0.03
BXH9/TyJ m 52528.0 0.0   1   0.0 0.0 52528.0, 52528.0 1.16
C3H/HeJ m 42624.0 8045.0   2   5689.0 0.189 36936.0, 48313.0 0.05
C57BL/6J m 48488.0 8000.0   5 3578.0 0.165 39331.0, 59101.0 0.71
C57L/J m 51221.0 0.0   1   0.0 0.0 51221.0, 51221.0 1.01
C58/J m 31384.0 0.0   1   0.0 0.0 31384.0, 31384.0 -1.22
CAST/EiJ m 34295.0 0.0   1   0.0 0.0 34295.0, 34295.0 -0.89
CBA/J m 49706.0 0.0   1   0.0 0.0 49706.0, 49706.0 0.84
CE/J m 56694.0 0.0   1   0.0 0.0 56694.0, 56694.0 1.63
CXB11/HiAJ m 43630.0 1148.0   2   812.0 0.0263 42819.0, 44442.0 0.16
CXB12/HiAJ m 40988.0 5551.0   2   3925.0 0.135 37064.0, 44913.0 -0.14
CXB13/HiAJ m 41355.0 8956.0   3 5171.0 0.217 34813.0, 51562.0 -0.1
CXB1/ByJ m 46637.0 13258.0   3 7654.0 0.284 34236.0, 60611.0 0.5
CXB2/ByJ m 50369.0 7812.0   3 4510.0 0.155 41960.0, 57401.0 0.92
CXB3/ByJ m 34968.0 7437.0   2   5259.0 0.213 29709.0, 40226.0 -0.81
CXB4/ByJ m 29649.0 875.0   2   619.0 0.0295 29030.0, 30268.0 -1.41
CXB6/ByJ m 45998.0 12647.0   3 7302.0 0.275 31655.0, 55546.0 0.43
CXB7/ByJ m 44301.0 4529.0   2   3203.0 0.102 41098.0, 47504.0 0.24
CXB8/HiAJ m 34031.0 6888.0   3 3977.0 0.202 28300.0, 41672.0 -0.92
CXB9/HiAJ m 38573.0 5170.0   3 2985.0 0.134 34538.0, 44401.0 -0.41
DBA/2J m 45196.0 5346.0   4 2673.0 0.118 42168.0, 53188.0 0.34
FVB/NJ m 45510.0 0.0   1   0.0 0.0 45510.0, 45510.0 0.37
I/LnJ m 58226.0 0.0   1   0.0 0.0 58226.0, 58226.0 1.8
KK/HlJ m 57519.0 0.0   1   0.0 0.0 57519.0, 57519.0 1.72
LG/J m 44634.0 0.0   1   0.0 0.0 44634.0, 44634.0 0.27
LP/J m 46301.0 0.0   1   0.0 0.0 46301.0, 46301.0 0.46
MA/MyJ m 69303.0 0.0   1   0.0 0.0 69303.0, 69303.0 3.05
NOD/ShiLtJ m 52269.0 0.0   1   0.0 0.0 52269.0, 52269.0 1.13
NON/ShiLtJ m 41863.0 0.0   1   0.0 0.0 41863.0, 41863.0 -0.04
NZW/LacJ m 41822.0 0.0   1   0.0 0.0 41822.0, 41822.0 -0.04
PL/J m 54901.0 0.0   1   0.0 0.0 54901.0, 54901.0 1.43
RIIIS/J m 43299.0 0.0   1   0.0 0.0 43299.0, 43299.0 0.12
SEA/GnJ m 43912.0 0.0   1   0.0 0.0 43912.0, 43912.0 0.19
SJL/J m 28666.0 0.0   1   0.0 0.0 28666.0, 28666.0 -1.52
SM/J m 79054.0 0.0   1   0.0 0.0 79054.0, 79054.0 4.14
SWR/J m 48155.0 0.0   1   0.0 0.0 48155.0, 48155.0 0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 41962.45 5928.1846 54009.9707 29914.9293
AXB19b/PgnJ m 46249.4 5928.1846 58296.9207 34201.8793
AXB24/PgnJ m 34090.7 5928.1846 46138.2207 22043.1793
BALB/cJ m 46235.2333 4840.3425 56071.9928 36398.4739
BXA16/PgnJ m 36168.6 5928.1846 48216.1207 24121.0793
BXD19/TyJ m 41728.65 5928.1846 53776.1707 29681.1293
BXD28/TyJ m 40613.15 5928.1846 52660.6707 28565.6293
BXH4/TyJ m 42873.95 5928.1846 54921.4707 30826.4293
C3H/HeJ m 42624.4 5928.1846 54671.9207 30576.8793
C57BL/6J m 48488.42 3749.3132 56107.9411 40868.8989
CXB11/HiAJ m 43630.3 5928.1846 55677.8207 31582.7793
CXB12/HiAJ m 40988.35 5928.1846 53035.8707 28940.8293
CXB13/HiAJ m 41355.1 4840.3425 51191.8594 31518.3406
CXB1/ByJ m 46637.1333 4840.3425 56473.8928 36800.3739
CXB2/ByJ m 50369.1 4840.3425 60205.8594 40532.3406
CXB3/ByJ m 34967.6 5928.1846 47015.1207 22920.0793
CXB4/ByJ m 29648.85 5928.1846 41696.3707 17601.3293
CXB6/ByJ m 45998.2333 4840.3425 55834.9928 36161.4739
CXB7/ByJ m 44300.75 5928.1846 56348.2707 32253.2293
CXB8/HiAJ m 34030.9 4840.3425 43867.6594 24194.1406
CXB9/HiAJ m 38572.9667 4840.3425 48409.7261 28736.2072
DBA/2J m 45195.95 4191.8596 53714.8336 36677.0664




  GWAS USING LINEAR MIXED MODELS