Phenotype measure:   HMDPpheno8   stearidonate

ID, description, units MPD:50371   stearidonate   liver stearidonate (18:4n3) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver stearidonate (18:4n3) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means2142625   None
Median of the strain means2168899   None
SD of the strain means± 991359
Coefficient of variation (CV)0.463
Min–max range of strain means170915   –   5003240   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 18610727277376.9 886225108446.521 0.8615 0.6341
Residuals 34 34974399214569.8 1028658800428.52


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2742584.0 0.0   1   0.0 0.0 2742584.0, 2742584.0 0.61
A/J m 2583820.0 421816.0   2   298269.0 0.163 2285551.0, 2882090.0 0.45
AKR/J m 2802695.0 0.0   1   0.0 0.0 2802695.0, 2802695.0 0.67
AXB10/PgnJ m 2531091.0 0.0   1   0.0 0.0 2531091.0, 2531091.0 0.39
AXB12/PgnJ m 3184272.0 0.0   1   0.0 0.0 3184272.0, 3184272.0 1.05
AXB13/PgnJ m 3197441.0 0.0   1   0.0 0.0 3197441.0, 3197441.0 1.06
AXB15/PgnJ m 4385140.0 0.0   1   0.0 0.0 4385140.0, 4385140.0 2.26
AXB19a/PgnJ m 1587232.0 0.0   1   0.0 0.0 1587232.0, 1587232.0 -0.56
AXB19b/PgnJ m 772199.0 168791.0   2   119353.0 0.219 652846.0, 891552.0 -1.38
AXB19/PgnJ m 1403663.0 0.0   1   0.0 0.0 1403663.0, 1403663.0 -0.75
AXB1/PgnJ m 522893.0 0.0   1   0.0 0.0 522893.0, 522893.0 -1.63
AXB23/PgnJ m 3444034.0 0.0   1   0.0 0.0 3444034.0, 3444034.0 1.31
AXB24/PgnJ m 2603865.0 42104.0   2   29772.0 0.0162 2574093.0, 2633637.0 0.47
AXB2/PgnJ m 2201586.0 0.0   1   0.0 0.0 2201586.0, 2201586.0 0.06
AXB4/PgnJ m 1091410.0 0.0   1   0.0 0.0 1091410.0, 1091410.0 -1.06
AXB5/PgnJ m 2901578.0 0.0   1   0.0 0.0 2901578.0, 2901578.0 0.77
AXB6/PgnJ m 1455440.0 0.0   1   0.0 0.0 1455440.0, 1455440.0 -0.69
AXB8/PgnJ m 2719815.0 0.0   1   0.0 0.0 2719815.0, 2719815.0 0.58
BALB/cJ m 1898269.0 164107.0   3 94747.0 0.0865 1717598.0, 2038099.0 -0.25
BTBR T+ Itpr3tf/J m 1185646.0 0.0   1   0.0 0.0 1185646.0, 1185646.0 -0.97
BUB/BnJ m 1888686.0 0.0   1   0.0 0.0 1888686.0, 1888686.0 -0.26
BXA11/PgnJ m 3260625.0 0.0   1   0.0 0.0 3260625.0, 3260625.0 1.13
BXA12/PgnJ m 2410420.0 0.0   1   0.0 0.0 2410420.0, 2410420.0 0.27
BXA13/PgnJ m 937794.0 0.0   1   0.0 0.0 937794.0, 937794.0 -1.22
BXA14/PgnJ m 274021.0 0.0   1   0.0 0.0 274021.0, 274021.0 -1.88
BXA16/PgnJ m 2424900.0 105389.0   2   74521.0 0.0435 2350379.0, 2499421.0 0.28
BXA1/PgnJ m 3345434.0 0.0   1   0.0 0.0 3345434.0, 3345434.0 1.21
BXA24/PgnJ m 1491489.0 0.0   1   0.0 0.0 1491489.0, 1491489.0 -0.66
BXA25/PgnJ m 2174732.0 0.0   1   0.0 0.0 2174732.0, 2174732.0 0.03
BXA26/PgnJ m 5003240.0 0.0   1   0.0 0.0 5003240.0, 5003240.0 2.89
BXA2/PgnJ m 2264341.0 0.0   1   0.0 0.0 2264341.0, 2264341.0 0.12
BXA4/PgnJ m 1203832.0 0.0   1   0.0 0.0 1203832.0, 1203832.0 -0.95
BXA7/PgnJ m 1779659.0 0.0   1   0.0 0.0 1779659.0, 1779659.0 -0.37
BXA8/PgnJ m 2838428.0 0.0   1   0.0 0.0 2838428.0, 2838428.0 0.7
BXD11/TyJ m 4071778.0 0.0   1   0.0 0.0 4071778.0, 4071778.0 1.95
BXD12/TyJ m 1781569.0 0.0   1   0.0 0.0 1781569.0, 1781569.0 -0.36
BXD13/TyJ m 3502358.0 0.0   1   0.0 0.0 3502358.0, 3502358.0 1.37
BXD14/TyJ m 1569416.0 0.0   1   0.0 0.0 1569416.0, 1569416.0 -0.58
BXD15/TyJ m 2063578.0 0.0   1   0.0 0.0 2063578.0, 2063578.0 -0.08
BXD18/TyJ m 2931918.0 0.0   1   0.0 0.0 2931918.0, 2931918.0 0.8
BXD19/TyJ m 2897728.0 1178386.0   2   833245.0 0.407 2064482.0, 3730972.0 0.76
BXD1/TyJ m 2532184.0 0.0   1   0.0 0.0 2532184.0, 2532184.0 0.39
BXD20/TyJ m 856921.0 0.0   1   0.0 0.0 856921.0, 856921.0 -1.3
BXD21/TyJ m 4412539.0 0.0   1   0.0 0.0 4412539.0, 4412539.0 2.29
BXD22/TyJ m 2162852.0 0.0   1   0.0 0.0 2162852.0, 2162852.0 0.02
BXD24/TyJ m 4129774.0 0.0   1   0.0 0.0 4129774.0, 4129774.0 2.0
BXD24/TyJ-Cep290rd16/J m 3073214.0 0.0   1   0.0 0.0 3073214.0, 3073214.0 0.94
BXD28/TyJ m 3098168.0 221470.0   2   156603.0 0.0715 2941564.0, 3254770.0 0.96
BXD29-Tlr4lps-2J/J m 1591572.0 0.0   1   0.0 0.0 1591572.0, 1591572.0 -0.56
BXD2/TyJ m 1102104.0 0.0   1   0.0 0.0 1102104.0, 1102104.0 -1.05
BXD32/TyJ m 2374952.0 0.0   1   0.0 0.0 2374952.0, 2374952.0 0.23
BXD33/TyJ m 960598.0 0.0   1   0.0 0.0 960598.0, 960598.0 -1.19
BXD34/TyJ m 3354968.0 0.0   1   0.0 0.0 3354968.0, 3354968.0 1.22
BXD36/TyJ m 3881187.0 0.0   1   0.0 0.0 3881187.0, 3881187.0 1.75
BXD38/TyJ m 3363410.0 0.0   1   0.0 0.0 3363410.0, 3363410.0 1.23
BXD39/TyJ m 1962435.0 0.0   1   0.0 0.0 1962435.0, 1962435.0 -0.18
BXD40/TyJ m 2363982.0 0.0   1   0.0 0.0 2363982.0, 2363982.0 0.22
BXD42/TyJ m 1542154.0 0.0   1   0.0 0.0 1542154.0, 1542154.0 -0.61
BXD5/TyJ m 2244215.0 0.0   1   0.0 0.0 2244215.0, 2244215.0 0.1
BXD6/TyJ m 1197561.0 0.0   1   0.0 0.0 1197561.0, 1197561.0 -0.95
BXD8/TyJ m 2784948.0 0.0   1   0.0 0.0 2784948.0, 2784948.0 0.65
BXD9/TyJ m 2163066.0 0.0   1   0.0 0.0 2163066.0, 2163066.0 0.02
BXH10/TyJ m 1467935.0 0.0   1   0.0 0.0 1467935.0, 1467935.0 -0.68
BXH19/TyJ m 407449.0 0.0   1   0.0 0.0 407449.0, 407449.0 -1.75
BXH20/KccJ m 1277585.0 0.0   1   0.0 0.0 1277585.0, 1277585.0 -0.87
BXH22/KccJ m 1707737.0 0.0   1   0.0 0.0 1707737.0, 1707737.0 -0.44
BXH2/TyJ m 1231087.0 0.0   1   0.0 0.0 1231087.0, 1231087.0 -0.92
BXH4/TyJ m 1508746.0 99156.0   2   70114.0 0.0657 1438632.0, 1578860.0 -0.64
BXH6/TyJ m 760710.0 0.0   1   0.0 0.0 760710.0, 760710.0 -1.39
BXH7/TyJ m 1689795.0 0.0   1   0.0 0.0 1689795.0, 1689795.0 -0.46
BXH8/TyJ m 1110824.0 0.0   1   0.0 0.0 1110824.0, 1110824.0 -1.04
BXH9/TyJ m 2103527.0 0.0   1   0.0 0.0 2103527.0, 2103527.0 -0.04
C3H/HeJ m 1737601.0 897949.0   2   634946.0 0.517 1102655.0, 2372547.0 -0.41
C57BL/6J m 2479752.0 491247.0   5 219692.0 0.198 1815153.0, 3067194.0 0.34
C57L/J m 2142561.0 0.0   1   0.0 0.0 2142561.0, 2142561.0 0.0
C58/J m 170915.0 0.0   1   0.0 0.0 170915.0, 170915.0 -1.99
CAST/EiJ m 393793.0 0.0   1   0.0 0.0 393793.0, 393793.0 -1.76
CBA/J m 2696724.0 0.0   1   0.0 0.0 2696724.0, 2696724.0 0.56
CE/J m 1951142.0 0.0   1   0.0 0.0 1951142.0, 1951142.0 -0.19
CXB11/HiAJ m 2919240.0 2770386.0   2   1958959.0 0.949 960282.0, 4878199.0 0.78
CXB12/HiAJ m 2699665.0 599553.0   2   423948.0 0.222 2275717.0, 3123613.0 0.56
CXB13/HiAJ m 2688390.0 2026183.0   3 1169817.0 0.754 1015261.0, 4941252.0 0.55
CXB1/ByJ m 1893407.0 1002611.0   3 578858.0 0.53 880356.0, 2885242.0 -0.25
CXB2/ByJ m 2469489.0 289955.0   3 167406.0 0.117 2164158.0, 2741124.0 0.33
CXB3/ByJ m 2274833.0 141867.0   2   100315.0 0.0624 2174518.0, 2375148.0 0.13
CXB4/ByJ m 2233789.0 260075.0   2   183901.0 0.116 2049888.0, 2417690.0 0.09
CXB6/ByJ m 1834626.0 404347.0   3 233450.0 0.22 1397363.0, 2195023.0 -0.31
CXB7/ByJ m 1174193.0 217988.0   2   154140.0 0.186 1020053.0, 1328334.0 -0.98
CXB8/HiAJ m 2558970.0 2131588.0   3 1230673.0 0.833 946996.0, 4975802.0 0.42
CXB9/HiAJ m 2932414.0 895223.0   3 516857.0 0.305 2225327.0, 3938986.0 0.8
DBA/2J m 3082873.0 797027.0   4 398514.0 0.259 2051750.0, 3855177.0 0.95
FVB/NJ m 469238.0 0.0   1   0.0 0.0 469238.0, 469238.0 -1.69
I/LnJ m 528060.0 0.0   1   0.0 0.0 528060.0, 528060.0 -1.63
KK/HlJ m 887888.0 0.0   1   0.0 0.0 887888.0, 887888.0 -1.27
LG/J m 1100382.0 0.0   1   0.0 0.0 1100382.0, 1100382.0 -1.05
LP/J m 1029931.0 0.0   1   0.0 0.0 1029931.0, 1029931.0 -1.12
MA/MyJ m 3363938.0 0.0   1   0.0 0.0 3363938.0, 3363938.0 1.23
NOD/ShiLtJ m 3293326.0 0.0   1   0.0 0.0 3293326.0, 3293326.0 1.16
NON/ShiLtJ m 1816096.0 0.0   1   0.0 0.0 1816096.0, 1816096.0 -0.33
NZW/LacJ m 1730582.0 0.0   1   0.0 0.0 1730582.0, 1730582.0 -0.42
PL/J m 2227986.0 0.0   1   0.0 0.0 2227986.0, 2227986.0 0.09
RIIIS/J m 2929071.0 0.0   1   0.0 0.0 2929071.0, 2929071.0 0.79
SEA/GnJ m 2577000.0 0.0   1   0.0 0.0 2577000.0, 2577000.0 0.44
SJL/J m 771116.0 0.0   1   0.0 0.0 771116.0, 771116.0 -1.38
SM/J m 2278205.0 0.0   1   0.0 0.0 2278205.0, 2278205.0 0.14
SWR/J m 2032190.0 0.0   1   0.0 0.0 2032190.0, 2032190.0 -0.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2583820.25 717167.6235 4041280.2151 1126360.2849
AXB19b/PgnJ m 772198.9 717167.6235 2229658.8651 0.0
AXB24/PgnJ m 2603865.0 717167.6235 4061324.9651 1146405.0349
BALB/cJ m 1898268.7333 585564.9125 3088279.8117 708257.655
BXA16/PgnJ m 2424899.8 717167.6235 3882359.7651 967439.8349
BXD19/TyJ m 2897727.5 717167.6235 4355187.4651 1440267.5349
BXD28/TyJ m 3098167.5 717167.6235 4555627.4651 1640707.5349
BXH4/TyJ m 1508745.95 717167.6235 2966205.9151 51285.9849
C3H/HeJ m 1737601.15 717167.6235 3195061.1151 280141.1849
C57BL/6J m 2479752.46 453576.6309 3401531.0777 1557973.8423
CXB11/HiAJ m 2919240.45 717167.6235 4376700.4151 1461780.4849
CXB12/HiAJ m 2699665.15 717167.6235 4157125.1151 1242205.1849
CXB13/HiAJ m 2688389.7 585564.9125 3878400.7784 1498378.6216
CXB1/ByJ m 1893407.3 585564.9125 3083418.3784 703396.2216
CXB2/ByJ m 2469488.6333 585564.9125 3659499.7117 1279477.555
CXB3/ByJ m 2274833.25 717167.6235 3732293.2151 817373.2849
CXB4/ByJ m 2233788.55 717167.6235 3691248.5151 776328.5849
CXB6/ByJ m 1834626.4 585564.9125 3024637.4784 644615.3216
CXB7/ByJ m 1174193.1 717167.6235 2631653.0651 0.0
CXB8/HiAJ m 2558969.9333 585564.9125 3748981.0117 1368958.855
CXB9/HiAJ m 2932414.2 585564.9125 4122425.2784 1742403.1216
DBA/2J m 3082873.2 507114.0898 4113453.0247 2052293.3753




  GWAS USING LINEAR MIXED MODELS