Phenotype measure:   HMDPpheno8   palmitoleate

ID, description, units MPD:50369   palmitoleate   liver palmitoleate (16:1n7) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver palmitoleate (16:1n7) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means15163156   None
Median of the strain means15372964   None
SD of the strain means± 4564246
Coefficient of variation (CV)0.301
Min–max range of strain means5371546   –   31773662   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 508622705452203.0 24220128831057.3 1.6243 0.1015
Residuals 34 506988865312727.0 14911437215080.2


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 18874218.0 0.0   1   0.0 0.0 18874218.0, 18874218.0 0.81
A/J m 15643238.0 330301.0   2   233558.0 0.0211 15409680.0, 15876796.0 0.11
AKR/J m 16412103.0 0.0   1   0.0 0.0 16412103.0, 16412103.0 0.27
AXB10/PgnJ m 17358220.0 0.0   1   0.0 0.0 17358220.0, 17358220.0 0.48
AXB12/PgnJ m 23564418.0 0.0   1   0.0 0.0 23564418.0, 23564418.0 1.84
AXB13/PgnJ m 14945015.0 0.0   1   0.0 0.0 14945015.0, 14945015.0 -0.05
AXB15/PgnJ m 20647834.0 0.0   1   0.0 0.0 20647834.0, 20647834.0 1.2
AXB19a/PgnJ m 12201185.0 0.0   1   0.0 0.0 12201185.0, 12201185.0 -0.65
AXB19b/PgnJ m 7960919.0 1340012.0   2   947531.0 0.168 7013388.0, 8908450.0 -1.58
AXB19/PgnJ m 10276920.0 0.0   1   0.0 0.0 10276920.0, 10276920.0 -1.07
AXB1/PgnJ m 8339067.0 0.0   1   0.0 0.0 8339067.0, 8339067.0 -1.5
AXB23/PgnJ m 18037442.0 0.0   1   0.0 0.0 18037442.0, 18037442.0 0.63
AXB24/PgnJ m 17095356.0 37443.0   2   26476.0 0.00219 17068880.0, 17121832.0 0.42
AXB2/PgnJ m 19785722.0 0.0   1   0.0 0.0 19785722.0, 19785722.0 1.01
AXB4/PgnJ m 11375771.0 0.0   1   0.0 0.0 11375771.0, 11375771.0 -0.83
AXB5/PgnJ m 21369116.0 0.0   1   0.0 0.0 21369116.0, 21369116.0 1.36
AXB6/PgnJ m 13140354.0 0.0   1   0.0 0.0 13140354.0, 13140354.0 -0.44
AXB8/PgnJ m 21277462.0 0.0   1   0.0 0.0 21277462.0, 21277462.0 1.34
BALB/cJ m 11263179.0 899812.0   3 519506.0 0.0799 10464722.0, 12238177.0 -0.85
BTBR T+ Itpr3tf/J m 8324829.0 0.0   1   0.0 0.0 8324829.0, 8324829.0 -1.5
BUB/BnJ m 14934857.0 0.0   1   0.0 0.0 14934857.0, 14934857.0 -0.05
BXA11/PgnJ m 26058502.0 0.0   1   0.0 0.0 26058502.0, 26058502.0 2.39
BXA12/PgnJ m 21227546.0 0.0   1   0.0 0.0 21227546.0, 21227546.0 1.33
BXA13/PgnJ m 9637674.0 0.0   1   0.0 0.0 9637674.0, 9637674.0 -1.21
BXA14/PgnJ m 5371546.0 0.0   1   0.0 0.0 5371546.0, 5371546.0 -2.15
BXA16/PgnJ m 17692908.0 4030011.0   2   2849648.0 0.228 14843260.0, 20542556.0 0.55
BXA1/PgnJ m 23151676.0 0.0   1   0.0 0.0 23151676.0, 23151676.0 1.75
BXA24/PgnJ m 11612526.0 0.0   1   0.0 0.0 11612526.0, 11612526.0 -0.78
BXA25/PgnJ m 20928444.0 0.0   1   0.0 0.0 20928444.0, 20928444.0 1.26
BXA26/PgnJ m 31773662.0 0.0   1   0.0 0.0 31773662.0, 31773662.0 3.64
BXA2/PgnJ m 17342776.0 0.0   1   0.0 0.0 17342776.0, 17342776.0 0.48
BXA4/PgnJ m 16298501.0 0.0   1   0.0 0.0 16298501.0, 16298501.0 0.25
BXA7/PgnJ m 14679293.0 0.0   1   0.0 0.0 14679293.0, 14679293.0 -0.11
BXA8/PgnJ m 21180728.0 0.0   1   0.0 0.0 21180728.0, 21180728.0 1.32
BXD11/TyJ m 20322398.0 0.0   1   0.0 0.0 20322398.0, 20322398.0 1.13
BXD12/TyJ m 15549892.0 0.0   1   0.0 0.0 15549892.0, 15549892.0 0.08
BXD13/TyJ m 14093632.0 0.0   1   0.0 0.0 14093632.0, 14093632.0 -0.23
BXD14/TyJ m 12547491.0 0.0   1   0.0 0.0 12547491.0, 12547491.0 -0.57
BXD15/TyJ m 13525987.0 0.0   1   0.0 0.0 13525987.0, 13525987.0 -0.36
BXD18/TyJ m 17500242.0 0.0   1   0.0 0.0 17500242.0, 17500242.0 0.51
BXD19/TyJ m 16146591.0 1729361.0   2   1222843.0 0.107 14923748.0, 17369434.0 0.22
BXD1/TyJ m 15182389.0 0.0   1   0.0 0.0 15182389.0, 15182389.0 0.0
BXD20/TyJ m 9604977.0 0.0   1   0.0 0.0 9604977.0, 9604977.0 -1.22
BXD21/TyJ m 22979276.0 0.0   1   0.0 0.0 22979276.0, 22979276.0 1.71
BXD22/TyJ m 11695124.0 0.0   1   0.0 0.0 11695124.0, 11695124.0 -0.76
BXD24/TyJ m 18304930.0 0.0   1   0.0 0.0 18304930.0, 18304930.0 0.69
BXD24/TyJ-Cep290rd16/J m 13884105.0 0.0   1   0.0 0.0 13884105.0, 13884105.0 -0.28
BXD28/TyJ m 18805776.0 3367935.0   2   2381490.0 0.179 16424287.0, 21187266.0 0.8
BXD29-Tlr4lps-2J/J m 15307410.0 0.0   1   0.0 0.0 15307410.0, 15307410.0 0.03
BXD2/TyJ m 11106455.0 0.0   1   0.0 0.0 11106455.0, 11106455.0 -0.89
BXD32/TyJ m 19666966.0 0.0   1   0.0 0.0 19666966.0, 19666966.0 0.99
BXD33/TyJ m 8636547.0 0.0   1   0.0 0.0 8636547.0, 8636547.0 -1.43
BXD34/TyJ m 16215130.0 0.0   1   0.0 0.0 16215130.0, 16215130.0 0.23
BXD36/TyJ m 15631860.0 0.0   1   0.0 0.0 15631860.0, 15631860.0 0.1
BXD38/TyJ m 20306378.0 0.0   1   0.0 0.0 20306378.0, 20306378.0 1.13
BXD39/TyJ m 19734128.0 0.0   1   0.0 0.0 19734128.0, 19734128.0 1.0
BXD40/TyJ m 15438519.0 0.0   1   0.0 0.0 15438519.0, 15438519.0 0.06
BXD42/TyJ m 12067081.0 0.0   1   0.0 0.0 12067081.0, 12067081.0 -0.68
BXD5/TyJ m 15210420.0 0.0   1   0.0 0.0 15210420.0, 15210420.0 0.01
BXD6/TyJ m 13538943.0 0.0   1   0.0 0.0 13538943.0, 13538943.0 -0.36
BXD8/TyJ m 15457191.0 0.0   1   0.0 0.0 15457191.0, 15457191.0 0.06
BXD9/TyJ m 12919370.0 0.0   1   0.0 0.0 12919370.0, 12919370.0 -0.49
BXH10/TyJ m 11780929.0 0.0   1   0.0 0.0 11780929.0, 11780929.0 -0.74
BXH19/TyJ m 8041492.0 0.0   1   0.0 0.0 8041492.0, 8041492.0 -1.56
BXH20/KccJ m 10502756.0 0.0   1   0.0 0.0 10502756.0, 10502756.0 -1.02
BXH22/KccJ m 11923527.0 0.0   1   0.0 0.0 11923527.0, 11923527.0 -0.71
BXH2/TyJ m 12193651.0 0.0   1   0.0 0.0 12193651.0, 12193651.0 -0.65
BXH4/TyJ m 7948064.0 974650.0   2   689182.0 0.123 7258883.0, 8637246.0 -1.58
BXH6/TyJ m 9330430.0 0.0   1   0.0 0.0 9330430.0, 9330430.0 -1.28
BXH7/TyJ m 12139272.0 0.0   1   0.0 0.0 12139272.0, 12139272.0 -0.66
BXH8/TyJ m 14231310.0 0.0   1   0.0 0.0 14231310.0, 14231310.0 -0.2
BXH9/TyJ m 17265518.0 0.0   1   0.0 0.0 17265518.0, 17265518.0 0.46
C3H/HeJ m 12371098.0 4122494.0   2   2915044.0 0.333 9456055.0, 15286142.0 -0.61
C57BL/6J m 15638532.0 2845676.0   5 1272625.0 0.182 11409842.0, 18873472.0 0.1
C57L/J m 21390834.0 0.0   1   0.0 0.0 21390834.0, 21390834.0 1.36
C58/J m 6667834.0 0.0   1   0.0 0.0 6667834.0, 6667834.0 -1.86
CAST/EiJ m 6100860.0 0.0   1   0.0 0.0 6100860.0, 6100860.0 -1.99
CBA/J m 15581318.0 0.0   1   0.0 0.0 15581318.0, 15581318.0 0.09
CE/J m 13078619.0 0.0   1   0.0 0.0 13078619.0, 13078619.0 -0.46
CXB11/HiAJ m 16593477.0 4454169.0   2   3149573.0 0.268 13443904.0, 19743050.0 0.31
CXB12/HiAJ m 13258771.0 1895789.0   2   1340525.0 0.143 11918246.0, 14599296.0 -0.42
CXB13/HiAJ m 14167598.0 4172498.0   3 2408993.0 0.295 10278798.0, 18575262.0 -0.22
CXB1/ByJ m 14792804.0 2407589.0   3 1390022.0 0.163 13059836.0, 17541866.0 -0.08
CXB2/ByJ m 18757245.0 1564256.0   3 903123.0 0.0834 17109438.0, 20221808.0 0.79
CXB3/ByJ m 13751951.0 589579.0   2   416895.0 0.0429 13335056.0, 14168846.0 -0.31
CXB4/ByJ m 15502083.0 1031411.0   2   729318.0 0.0665 14772765.0, 16231401.0 0.07
CXB6/ByJ m 11716343.0 3666445.0   3 2116823.0 0.313 9518629.0, 15948945.0 -0.76
CXB7/ByJ m 12477322.0 2821699.0   2   1995242.0 0.226 10482079.0, 14472564.0 -0.59
CXB8/HiAJ m 15731124.0 9448846.0   3 5455294.0 0.601 10220574.0, 26641524.0 0.12
CXB9/HiAJ m 19365919.0 5715138.0   3 3299636.0 0.295 14125868.0, 25460020.0 0.92
DBA/2J m 17894854.0 4749262.0   4 2374631.0 0.265 12247158.0, 22823620.0 0.6
FVB/NJ m 9087978.0 0.0   1   0.0 0.0 9087978.0, 9087978.0 -1.33
I/LnJ m 7580082.0 0.0   1   0.0 0.0 7580082.0, 7580082.0 -1.66
KK/HlJ m 17008188.0 0.0   1   0.0 0.0 17008188.0, 17008188.0 0.4
LG/J m 11512959.0 0.0   1   0.0 0.0 11512959.0, 11512959.0 -0.8
LP/J m 12007319.0 0.0   1   0.0 0.0 12007319.0, 12007319.0 -0.69
MA/MyJ m 21185214.0 0.0   1   0.0 0.0 21185214.0, 21185214.0 1.32
NOD/ShiLtJ m 20879734.0 0.0   1   0.0 0.0 20879734.0, 20879734.0 1.25
NON/ShiLtJ m 16196204.0 0.0   1   0.0 0.0 16196204.0, 16196204.0 0.23
NZW/LacJ m 16434190.0 0.0   1   0.0 0.0 16434190.0, 16434190.0 0.28
PL/J m 16588941.0 0.0   1   0.0 0.0 16588941.0, 16588941.0 0.31
RIIIS/J m 18874162.0 0.0   1   0.0 0.0 18874162.0, 18874162.0 0.81
SEA/GnJ m 16808700.0 0.0   1   0.0 0.0 16808700.0, 16808700.0 0.36
SJL/J m 10400569.0 0.0   1   0.0 0.0 10400569.0, 10400569.0 -1.04
SM/J m 15020736.0 0.0   1   0.0 0.0 15020736.0, 15020736.0 -0.03
SWR/J m 16351776.0 0.0   1   0.0 0.0 16351776.0, 16351776.0 0.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 15643238.0 2730516.1797 21192314.5138 10094161.4862
AXB19b/PgnJ m 7960918.75 2730516.1797 13509995.2638 2411842.2362
AXB24/PgnJ m 17095356.0 2730516.1797 22644432.5138 11546279.4862
BALB/cJ m 11263178.6667 2229457.1249 15793980.6675 6732376.6659
BXA16/PgnJ m 17692908.0 2730516.1797 23241984.5138 12143831.4862
BXD19/TyJ m 16146591.0 2730516.1797 21695667.5138 10597514.4862
BXD28/TyJ m 18805776.5 2730516.1797 24354853.0138 13256699.9862
BXH4/TyJ m 7948064.5 2730516.1797 13497141.0138 2398987.9862
C3H/HeJ m 12371098.5 2730516.1797 17920175.0138 6822021.9862
C57BL/6J m 15638532.2 1726930.0632 19148076.3388 12128988.0612
CXB11/HiAJ m 16593477.0 2730516.1797 22142553.5138 11044400.4862
CXB12/HiAJ m 13258771.0 2730516.1797 18807847.5138 7709694.4862
CXB13/HiAJ m 14167598.0 2229457.1249 18698400.0008 9636795.9992
CXB1/ByJ m 14792804.0 2229457.1249 19323606.0008 10262001.9992
CXB2/ByJ m 18757245.3333 2229457.1249 23288047.3341 14226443.3325
CXB3/ByJ m 13751951.0 2730516.1797 19301027.5138 8202874.4862
CXB4/ByJ m 15502083.0 2730516.1797 21051159.5138 9953006.4862
CXB6/ByJ m 11716343.0 2229457.1249 16247145.0008 7185540.9992
CXB7/ByJ m 12477321.5 2730516.1797 18026398.0138 6928244.9862
CXB8/HiAJ m 15731123.6667 2229457.1249 20261925.6675 11200321.6659
CXB9/HiAJ m 19365919.3333 2229457.1249 23896721.3341 14835117.3325
DBA/2J m 17894854.0 1930766.5068 21818643.6322 13971064.3678




  GWAS USING LINEAR MIXED MODELS