Phenotype measure:   HMDPpheno8   palmitate

ID, description, units MPD:50368   palmitate   liver palmitate (16:0) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver palmitate (16:0) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means46046965   None
Median of the strain means47070650   None
SD of the strain means± 8389446
Coefficient of variation (CV)0.182
Min–max range of strain means26198636   –   68659712   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 3854980023847140.0 183570477326054.0 2.306 0.0146
Residuals 34 2706592758673690.0 79605669372755.7


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 48440048.0 0.0   1   0.0 0.0 48440048.0, 48440048.0 0.29
A/J m 43560446.0 1423635.0   2   1006662.0 0.0327 42553784.0, 44567108.0 -0.3
AKR/J m 42805948.0 0.0   1   0.0 0.0 42805948.0, 42805948.0 -0.39
AXB10/PgnJ m 43859452.0 0.0   1   0.0 0.0 43859452.0, 43859452.0 -0.26
AXB12/PgnJ m 51659964.0 0.0   1   0.0 0.0 51659964.0, 51659964.0 0.67
AXB13/PgnJ m 37290296.0 0.0   1   0.0 0.0 37290296.0, 37290296.0 -1.04
AXB15/PgnJ m 46291704.0 0.0   1   0.0 0.0 46291704.0, 46291704.0 0.03
AXB19a/PgnJ m 43052528.0 0.0   1   0.0 0.0 43052528.0, 43052528.0 -0.36
AXB19b/PgnJ m 31348969.0 6927558.0   2   4898523.0 0.221 26450446.0, 36247492.0 -1.75
AXB19/PgnJ m 44789812.0 0.0   1   0.0 0.0 44789812.0, 44789812.0 -0.15
AXB1/PgnJ m 29059624.0 0.0   1   0.0 0.0 29059624.0, 29059624.0 -2.02
AXB23/PgnJ m 55675504.0 0.0   1   0.0 0.0 55675504.0, 55675504.0 1.15
AXB24/PgnJ m 42709170.0 1360663.0   2   962134.0 0.0319 41747036.0, 43671304.0 -0.4
AXB2/PgnJ m 47083052.0 0.0   1   0.0 0.0 47083052.0, 47083052.0 0.12
AXB4/PgnJ m 40611044.0 0.0   1   0.0 0.0 40611044.0, 40611044.0 -0.65
AXB5/PgnJ m 50160636.0 0.0   1   0.0 0.0 50160636.0, 50160636.0 0.49
AXB6/PgnJ m 41372160.0 0.0   1   0.0 0.0 41372160.0, 41372160.0 -0.56
AXB8/PgnJ m 52323676.0 0.0   1   0.0 0.0 52323676.0, 52323676.0 0.75
BALB/cJ m 47107003.0 767785.0   3 443281.0 0.0163 46313064.0, 47845644.0 0.13
BTBR T+ Itpr3tf/J m 32850340.0 0.0   1   0.0 0.0 32850340.0, 32850340.0 -1.57
BUB/BnJ m 52179584.0 0.0   1   0.0 0.0 52179584.0, 52179584.0 0.73
BXA11/PgnJ m 61478100.0 0.0   1   0.0 0.0 61478100.0, 61478100.0 1.84
BXA12/PgnJ m 52832460.0 0.0   1   0.0 0.0 52832460.0, 52832460.0 0.81
BXA13/PgnJ m 38529320.0 0.0   1   0.0 0.0 38529320.0, 38529320.0 -0.9
BXA14/PgnJ m 26198636.0 0.0   1   0.0 0.0 26198636.0, 26198636.0 -2.37
BXA16/PgnJ m 48442382.0 3848864.0   2   2721558.0 0.0795 45720824.0, 51163940.0 0.29
BXA1/PgnJ m 58131248.0 0.0   1   0.0 0.0 58131248.0, 58131248.0 1.44
BXA24/PgnJ m 40814628.0 0.0   1   0.0 0.0 40814628.0, 40814628.0 -0.62
BXA25/PgnJ m 46992116.0 0.0   1   0.0 0.0 46992116.0, 46992116.0 0.11
BXA26/PgnJ m 68659712.0 0.0   1   0.0 0.0 68659712.0, 68659712.0 2.7
BXA2/PgnJ m 47779184.0 0.0   1   0.0 0.0 47779184.0, 47779184.0 0.21
BXA4/PgnJ m 41179184.0 0.0   1   0.0 0.0 41179184.0, 41179184.0 -0.58
BXA7/PgnJ m 38705000.0 0.0   1   0.0 0.0 38705000.0, 38705000.0 -0.88
BXA8/PgnJ m 54362324.0 0.0   1   0.0 0.0 54362324.0, 54362324.0 0.99
BXD11/TyJ m 39016076.0 0.0   1   0.0 0.0 39016076.0, 39016076.0 -0.84
BXD12/TyJ m 45121596.0 0.0   1   0.0 0.0 45121596.0, 45121596.0 -0.11
BXD13/TyJ m 51546160.0 0.0   1   0.0 0.0 51546160.0, 51546160.0 0.66
BXD14/TyJ m 40545176.0 0.0   1   0.0 0.0 40545176.0, 40545176.0 -0.66
BXD15/TyJ m 46996396.0 0.0   1   0.0 0.0 46996396.0, 46996396.0 0.11
BXD18/TyJ m 52011460.0 0.0   1   0.0 0.0 52011460.0, 52011460.0 0.71
BXD19/TyJ m 47298998.0 6136966.0   2   4339490.0 0.13 42959508.0, 51638488.0 0.15
BXD1/TyJ m 46186336.0 0.0   1   0.0 0.0 46186336.0, 46186336.0 0.02
BXD20/TyJ m 35283136.0 0.0   1   0.0 0.0 35283136.0, 35283136.0 -1.28
BXD21/TyJ m 49539520.0 0.0   1   0.0 0.0 49539520.0, 49539520.0 0.42
BXD22/TyJ m 47058248.0 0.0   1   0.0 0.0 47058248.0, 47058248.0 0.12
BXD24/TyJ m 50052116.0 0.0   1   0.0 0.0 50052116.0, 50052116.0 0.48
BXD24/TyJ-Cep290rd16/J m 41441056.0 0.0   1   0.0 0.0 41441056.0, 41441056.0 -0.55
BXD28/TyJ m 55726206.0 755419.0   2   534162.0 0.0136 55192044.0, 56260368.0 1.15
BXD29-Tlr4lps-2J/J m 45006632.0 0.0   1   0.0 0.0 45006632.0, 45006632.0 -0.12
BXD2/TyJ m 43496896.0 0.0   1   0.0 0.0 43496896.0, 43496896.0 -0.3
BXD32/TyJ m 56696744.0 0.0   1   0.0 0.0 56696744.0, 56696744.0 1.27
BXD33/TyJ m 30453730.0 0.0   1   0.0 0.0 30453730.0, 30453730.0 -1.86
BXD34/TyJ m 54008984.0 0.0   1   0.0 0.0 54008984.0, 54008984.0 0.95
BXD36/TyJ m 46949056.0 0.0   1   0.0 0.0 46949056.0, 46949056.0 0.11
BXD38/TyJ m 48969168.0 0.0   1   0.0 0.0 48969168.0, 48969168.0 0.35
BXD39/TyJ m 53874972.0 0.0   1   0.0 0.0 53874972.0, 53874972.0 0.93
BXD40/TyJ m 49121724.0 0.0   1   0.0 0.0 49121724.0, 49121724.0 0.37
BXD42/TyJ m 38400472.0 0.0   1   0.0 0.0 38400472.0, 38400472.0 -0.91
BXD5/TyJ m 48543428.0 0.0   1   0.0 0.0 48543428.0, 48543428.0 0.3
BXD6/TyJ m 47169540.0 0.0   1   0.0 0.0 47169540.0, 47169540.0 0.13
BXD8/TyJ m 46874684.0 0.0   1   0.0 0.0 46874684.0, 46874684.0 0.1
BXD9/TyJ m 51880100.0 0.0   1   0.0 0.0 51880100.0, 51880100.0 0.7
BXH10/TyJ m 39088960.0 0.0   1   0.0 0.0 39088960.0, 39088960.0 -0.83
BXH19/TyJ m 29356576.0 0.0   1   0.0 0.0 29356576.0, 29356576.0 -1.99
BXH20/KccJ m 43545836.0 0.0   1   0.0 0.0 43545836.0, 43545836.0 -0.3
BXH22/KccJ m 48681768.0 0.0   1   0.0 0.0 48681768.0, 48681768.0 0.31
BXH2/TyJ m 39863648.0 0.0   1   0.0 0.0 39863648.0, 39863648.0 -0.74
BXH4/TyJ m 41128824.0 3028465.0   2   2141448.0 0.0736 38987376.0, 43270272.0 -0.59
BXH6/TyJ m 30603062.0 0.0   1   0.0 0.0 30603062.0, 30603062.0 -1.84
BXH7/TyJ m 38298944.0 0.0   1   0.0 0.0 38298944.0, 38298944.0 -0.92
BXH8/TyJ m 45812896.0 0.0   1   0.0 0.0 45812896.0, 45812896.0 -0.03
BXH9/TyJ m 54161228.0 0.0   1   0.0 0.0 54161228.0, 54161228.0 0.97
C3H/HeJ m 42848886.0 16158038.0   2   11425458.0 0.377 31423428.0, 54274344.0 -0.38
C57BL/6J m 49144945.0 9273604.0   5 4147282.0 0.189 33658728.0, 57264688.0 0.37
C57L/J m 55927636.0 0.0   1   0.0 0.0 55927636.0, 55927636.0 1.18
C58/J m 28154656.0 0.0   1   0.0 0.0 28154656.0, 28154656.0 -2.13
CAST/EiJ m 29918430.0 0.0   1   0.0 0.0 29918430.0, 29918430.0 -1.92
CBA/J m 50688928.0 0.0   1   0.0 0.0 50688928.0, 50688928.0 0.55
CE/J m 48344812.0 0.0   1   0.0 0.0 48344812.0, 48344812.0 0.27
CXB11/HiAJ m 48806478.0 5999911.0   2   4242578.0 0.123 44563900.0, 53049056.0 0.33
CXB12/HiAJ m 62469388.0 4412720.0   2   3120264.0 0.0706 59349124.0, 65589652.0 1.96
CXB13/HiAJ m 51547915.0 6489428.0   3 3746673.0 0.126 44201880.0, 56501364.0 0.66
CXB1/ByJ m 48697477.0 6523644.0   3 3766428.0 0.134 41526240.0, 54280080.0 0.32
CXB2/ByJ m 62177743.0 8938270.0   3 5160513.0 0.144 52958744.0, 70805976.0 1.92
CXB3/ByJ m 55140062.0 1856729.0   2   1312906.0 0.0337 53827156.0, 56452968.0 1.08
CXB4/ByJ m 53720092.0 2327247.0   2   1645612.0 0.0433 52074480.0, 55365704.0 0.91
CXB6/ByJ m 38223017.0 4937007.0   3 2850382.0 0.129 33356238.0, 43227376.0 -0.93
CXB7/ByJ m 48739736.0 4498449.0   2   3180884.0 0.0923 45558852.0, 51920620.0 0.32
CXB8/HiAJ m 61287003.0 23755519.0   3 13715255.0 0.388 46989164.0, 88709144.0 1.82
CXB9/HiAJ m 67608007.0 12519458.0   3 7228113.0 0.185 54998180.0, 80035096.0 2.57
DBA/2J m 48009041.0 5217817.0   4 2608909.0 0.109 41442664.0, 53945828.0 0.23
FVB/NJ m 33119686.0 0.0   1   0.0 0.0 33119686.0, 33119686.0 -1.54
I/LnJ m 33078662.0 0.0   1   0.0 0.0 33078662.0, 33078662.0 -1.55
KK/HlJ m 51826080.0 0.0   1   0.0 0.0 51826080.0, 51826080.0 0.69
LG/J m 37142848.0 0.0   1   0.0 0.0 37142848.0, 37142848.0 -1.06
LP/J m 37544268.0 0.0   1   0.0 0.0 37544268.0, 37544268.0 -1.01
MA/MyJ m 47209648.0 0.0   1   0.0 0.0 47209648.0, 47209648.0 0.14
NOD/ShiLtJ m 51964996.0 0.0   1   0.0 0.0 51964996.0, 51964996.0 0.71
NON/ShiLtJ m 45253932.0 0.0   1   0.0 0.0 45253932.0, 45253932.0 -0.09
NZW/LacJ m 49702504.0 0.0   1   0.0 0.0 49702504.0, 49702504.0 0.44
PL/J m 46807112.0 0.0   1   0.0 0.0 46807112.0, 46807112.0 0.09
RIIIS/J m 51795740.0 0.0   1   0.0 0.0 51795740.0, 51795740.0 0.69
SEA/GnJ m 49078160.0 0.0   1   0.0 0.0 49078160.0, 49078160.0 0.36
SJL/J m 35216772.0 0.0   1   0.0 0.0 35216772.0, 35216772.0 -1.29
SM/J m 43281292.0 0.0   1   0.0 0.0 43281292.0, 43281292.0 -0.33
SWR/J m 48356784.0 0.0   1   0.0 0.0 48356784.0, 48356784.0 0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 43560446.0 6308948.7782 56381772.5141 30739119.4859
AXB19b/PgnJ m 31348969.0 6308948.7782 44170295.5141 18527642.4859
AXB24/PgnJ m 42709170.0 6308948.7782 55530496.5141 29887843.4859
BALB/cJ m 47107002.6667 5151235.1067 57575571.9284 36638433.4049
BXA16/PgnJ m 48442382.0 6308948.7782 61263708.5141 35621055.4859
BXD19/TyJ m 47298998.0 6308948.7782 60120324.5141 34477671.4859
BXD28/TyJ m 55726206.0 6308948.7782 68547532.5141 42904879.4859
BXH4/TyJ m 41128824.0 6308948.7782 53950150.5141 28307497.4859
C3H/HeJ m 42848886.0 6308948.7782 55670212.5141 30027559.4859
C57BL/6J m 49144944.8 3990129.5561 57253863.6819 41036025.9181
CXB11/HiAJ m 48806478.0 6308948.7782 61627804.5141 35985151.4859
CXB12/HiAJ m 62469388.0 6308948.7782 75290714.5141 49648061.4859
CXB13/HiAJ m 51547914.6667 5151235.1067 62016483.9284 41079345.4049
CXB1/ByJ m 48697477.3333 5151235.1067 59166046.5951 38228908.0716
CXB2/ByJ m 62177742.6667 5151235.1067 72646311.9284 51709173.4049
CXB3/ByJ m 55140062.0 6308948.7782 67961388.5141 42318735.4859
CXB4/ByJ m 53720092.0 6308948.7782 66541418.5141 40898765.4859
CXB6/ByJ m 38223016.6667 5151235.1067 48691585.9284 27754447.4049
CXB7/ByJ m 48739736.0 6308948.7782 61561062.5141 35918409.4859
CXB8/HiAJ m 61287002.6667 5151235.1067 71755571.9284 50818433.4049
CXB9/HiAJ m 67608006.6667 5151235.1067 78076575.9284 57139437.4049
DBA/2J m 48009041.0 4461100.4632 57075087.9219 38942994.0781




  GWAS USING LINEAR MIXED MODELS