Phenotype measure:   HMDPpheno8   nonadecenoate

ID, description, units MPD:50366   nonadecenoate   liver 10-nonadecenoate (19:1n9) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver 10-nonadecenoate (19:1n9) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means648434   None
Median of the strain means639716   None
SD of the strain means± 221067
Coefficient of variation (CV)0.341
Min–max range of strain means167381   –   1278097   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2478913390149.01 118043494769.001 1.0098 0.4778
Residuals 34 3974595133390.2 116899856864.418


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 534629.0 0.0   1   0.0 0.0 534629.0, 534629.0 -0.51
A/J m 574758.0 169.0   2   119.0 0.000294 574639.0, 574878.0 -0.33
AKR/J m 341227.0 0.0   1   0.0 0.0 341227.0, 341227.0 -1.39
AXB10/PgnJ m 446989.0 0.0   1   0.0 0.0 446989.0, 446989.0 -0.91
AXB12/PgnJ m 818481.0 0.0   1   0.0 0.0 818481.0, 818481.0 0.77
AXB13/PgnJ m 546406.0 0.0   1   0.0 0.0 546406.0, 546406.0 -0.46
AXB15/PgnJ m 670578.0 0.0   1   0.0 0.0 670578.0, 670578.0 0.1
AXB19a/PgnJ m 648147.0 0.0   1   0.0 0.0 648147.0, 648147.0 0.0
AXB19b/PgnJ m 528331.0 47365.0   2   33492.0 0.0896 494839.0, 561823.0 -0.54
AXB19/PgnJ m 793472.0 0.0   1   0.0 0.0 793472.0, 793472.0 0.66
AXB1/PgnJ m 445614.0 0.0   1   0.0 0.0 445614.0, 445614.0 -0.92
AXB23/PgnJ m 730434.0 0.0   1   0.0 0.0 730434.0, 730434.0 0.37
AXB24/PgnJ m 767521.0 351506.0   2   248552.0 0.458 518970.0, 1016073.0 0.54
AXB2/PgnJ m 1278097.0 0.0   1   0.0 0.0 1278097.0, 1278097.0 2.85
AXB4/PgnJ m 729375.0 0.0   1   0.0 0.0 729375.0, 729375.0 0.37
AXB5/PgnJ m 805997.0 0.0   1   0.0 0.0 805997.0, 805997.0 0.71
AXB6/PgnJ m 845793.0 0.0   1   0.0 0.0 845793.0, 845793.0 0.89
AXB8/PgnJ m 570781.0 0.0   1   0.0 0.0 570781.0, 570781.0 -0.35
BALB/cJ m 632168.0 70229.0   3 40547.0 0.111 551159.0, 675872.0 -0.07
BTBR T+ Itpr3tf/J m 356658.0 0.0   1   0.0 0.0 356658.0, 356658.0 -1.32
BUB/BnJ m 713577.0 0.0   1   0.0 0.0 713577.0, 713577.0 0.29
BXA11/PgnJ m 656324.0 0.0   1   0.0 0.0 656324.0, 656324.0 0.04
BXA12/PgnJ m 814098.0 0.0   1   0.0 0.0 814098.0, 814098.0 0.75
BXA13/PgnJ m 539598.0 0.0   1   0.0 0.0 539598.0, 539598.0 -0.49
BXA14/PgnJ m 167381.0 0.0   1   0.0 0.0 167381.0, 167381.0 -2.18
BXA16/PgnJ m 590351.0 77257.0   2   54629.0 0.131 535722.0, 644980.0 -0.26
BXA1/PgnJ m 847833.0 0.0   1   0.0 0.0 847833.0, 847833.0 0.9
BXA24/PgnJ m 470592.0 0.0   1   0.0 0.0 470592.0, 470592.0 -0.8
BXA25/PgnJ m 828430.0 0.0   1   0.0 0.0 828430.0, 828430.0 0.81
BXA26/PgnJ m 1218500.0 0.0   1   0.0 0.0 1218500.0, 1218500.0 2.58
BXA2/PgnJ m 613561.0 0.0   1   0.0 0.0 613561.0, 613561.0 -0.16
BXA4/PgnJ m 793573.0 0.0   1   0.0 0.0 793573.0, 793573.0 0.66
BXA7/PgnJ m 633065.0 0.0   1   0.0 0.0 633065.0, 633065.0 -0.07
BXA8/PgnJ m 789967.0 0.0   1   0.0 0.0 789967.0, 789967.0 0.64
BXD11/TyJ m 460334.0 0.0   1   0.0 0.0 460334.0, 460334.0 -0.85
BXD12/TyJ m 789057.0 0.0   1   0.0 0.0 789057.0, 789057.0 0.64
BXD13/TyJ m 503942.0 0.0   1   0.0 0.0 503942.0, 503942.0 -0.65
BXD14/TyJ m 300015.0 0.0   1   0.0 0.0 300015.0, 300015.0 -1.58
BXD15/TyJ m 552286.0 0.0   1   0.0 0.0 552286.0, 552286.0 -0.43
BXD18/TyJ m 710768.0 0.0   1   0.0 0.0 710768.0, 710768.0 0.28
BXD19/TyJ m 519852.0 150472.0   2   106400.0 0.289 413452.0, 626252.0 -0.58
BXD1/TyJ m 709595.0 0.0   1   0.0 0.0 709595.0, 709595.0 0.28
BXD20/TyJ m 816540.0 0.0   1   0.0 0.0 816540.0, 816540.0 0.76
BXD21/TyJ m 660029.0 0.0   1   0.0 0.0 660029.0, 660029.0 0.05
BXD22/TyJ m 588016.0 0.0   1   0.0 0.0 588016.0, 588016.0 -0.27
BXD24/TyJ m 608185.0 0.0   1   0.0 0.0 608185.0, 608185.0 -0.18
BXD24/TyJ-Cep290rd16/J m 393431.0 0.0   1   0.0 0.0 393431.0, 393431.0 -1.15
BXD28/TyJ m 660493.0 155316.0   2   109825.0 0.235 550668.0, 770318.0 0.05
BXD29-Tlr4lps-2J/J m 638133.0 0.0   1   0.0 0.0 638133.0, 638133.0 -0.05
BXD2/TyJ m 590486.0 0.0   1   0.0 0.0 590486.0, 590486.0 -0.26
BXD32/TyJ m 989106.0 0.0   1   0.0 0.0 989106.0, 989106.0 1.54
BXD33/TyJ m 314464.0 0.0   1   0.0 0.0 314464.0, 314464.0 -1.51
BXD34/TyJ m 744051.0 0.0   1   0.0 0.0 744051.0, 744051.0 0.43
BXD36/TyJ m 582445.0 0.0   1   0.0 0.0 582445.0, 582445.0 -0.3
BXD38/TyJ m 926970.0 0.0   1   0.0 0.0 926970.0, 926970.0 1.26
BXD39/TyJ m 635159.0 0.0   1   0.0 0.0 635159.0, 635159.0 -0.06
BXD40/TyJ m 699383.0 0.0   1   0.0 0.0 699383.0, 699383.0 0.23
BXD42/TyJ m 552728.0 0.0   1   0.0 0.0 552728.0, 552728.0 -0.43
BXD5/TyJ m 741110.0 0.0   1   0.0 0.0 741110.0, 741110.0 0.42
BXD6/TyJ m 496657.0 0.0   1   0.0 0.0 496657.0, 496657.0 -0.69
BXD8/TyJ m 1029407.0 0.0   1   0.0 0.0 1029407.0, 1029407.0 1.72
BXD9/TyJ m 417042.0 0.0   1   0.0 0.0 417042.0, 417042.0 -1.05
BXH10/TyJ m 347496.0 0.0   1   0.0 0.0 347496.0, 347496.0 -1.36
BXH19/TyJ m 358678.0 0.0   1   0.0 0.0 358678.0, 358678.0 -1.31
BXH20/KccJ m 483367.0 0.0   1   0.0 0.0 483367.0, 483367.0 -0.75
BXH22/KccJ m 837635.0 0.0   1   0.0 0.0 837635.0, 837635.0 0.86
BXH2/TyJ m 528589.0 0.0   1   0.0 0.0 528589.0, 528589.0 -0.54
BXH4/TyJ m 395316.0 8084.0   2   5716.0 0.0204 389600.0, 401032.0 -1.14
BXH6/TyJ m 286796.0 0.0   1   0.0 0.0 286796.0, 286796.0 -1.64
BXH7/TyJ m 439808.0 0.0   1   0.0 0.0 439808.0, 439808.0 -0.94
BXH8/TyJ m 729011.0 0.0   1   0.0 0.0 729011.0, 729011.0 0.36
BXH9/TyJ m 635297.0 0.0   1   0.0 0.0 635297.0, 635297.0 -0.06
C3H/HeJ m 487003.0 281332.0   2   198932.0 0.578 288071.0, 685936.0 -0.73
C57BL/6J m 821871.0 148527.0   5 66423.0 0.181 629956.0, 1021478.0 0.78
C57L/J m 1145208.0 0.0   1   0.0 0.0 1145208.0, 1145208.0 2.25
C58/J m 320728.0 0.0   1   0.0 0.0 320728.0, 320728.0 -1.48
CAST/EiJ m 182019.0 0.0   1   0.0 0.0 182019.0, 182019.0 -2.11
CBA/J m 773523.0 0.0   1   0.0 0.0 773523.0, 773523.0 0.57
CE/J m 648290.0 0.0   1   0.0 0.0 648290.0, 648290.0 0.0
CXB11/HiAJ m 616973.0 195361.0   2   138141.0 0.317 478832.0, 755114.0 -0.14
CXB12/HiAJ m 1002838.0 250155.0   2   176887.0 0.249 825952.0, 1179725.0 1.6
CXB13/HiAJ m 720076.0 174359.0   3 100666.0 0.242 535709.0, 882314.0 0.32
CXB1/ByJ m 672166.0 272102.0   3 157098.0 0.405 359506.0, 855377.0 0.11
CXB2/ByJ m 1164458.0 535842.0   3 309368.0 0.46 833124.0, 1782662.0 2.33
CXB3/ByJ m 716805.0 177512.0   2   125520.0 0.248 591285.0, 842325.0 0.31
CXB4/ByJ m 533054.0 220915.0   2   156210.0 0.414 376844.0, 689265.0 -0.52
CXB6/ByJ m 559261.0 220639.0   3 127386.0 0.395 375994.0, 804163.0 -0.4
CXB7/ByJ m 648417.0 12196.0   2   8624.0 0.0188 639793.0, 657041.0 0.0
CXB8/HiAJ m 840526.0 342480.0   3 197731.0 0.407 618437.0, 1234943.0 0.87
CXB9/HiAJ m 1254756.0 1034263.0   3 597132.0 0.824 540846.0, 2440836.0 2.74
DBA/2J m 688231.0 247020.0   4 123510.0 0.359 420743.0, 958874.0 0.18
FVB/NJ m 629646.0 0.0   1   0.0 0.0 629646.0, 629646.0 -0.08
I/LnJ m 524614.0 0.0   1   0.0 0.0 524614.0, 524614.0 -0.56
KK/HlJ m 1002627.0 0.0   1   0.0 0.0 1002627.0, 1002627.0 1.6
LG/J m 261338.0 0.0   1   0.0 0.0 261338.0, 261338.0 -1.75
LP/J m 445190.0 0.0   1   0.0 0.0 445190.0, 445190.0 -0.92
MA/MyJ m 1015658.0 0.0   1   0.0 0.0 1015658.0, 1015658.0 1.66
NOD/ShiLtJ m 641300.0 0.0   1   0.0 0.0 641300.0, 641300.0 -0.03
NON/ShiLtJ m 302993.0 0.0   1   0.0 0.0 302993.0, 302993.0 -1.56
NZW/LacJ m 736725.0 0.0   1   0.0 0.0 736725.0, 736725.0 0.4
PL/J m 646487.0 0.0   1   0.0 0.0 646487.0, 646487.0 -0.01
RIIIS/J m 569509.0 0.0   1   0.0 0.0 569509.0, 569509.0 -0.36
SEA/GnJ m 652745.0 0.0   1   0.0 0.0 652745.0, 652745.0 0.02
SJL/J m 543034.0 0.0   1   0.0 0.0 543034.0, 543034.0 -0.48
SM/J m 667579.0 0.0   1   0.0 0.0 667579.0, 667579.0 0.09
SWR/J m 884338.0 0.0   1   0.0 0.0 884338.0, 884338.0 1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 574758.5 241764.2001 1066082.4681 83434.5319
AXB19b/PgnJ m 528331.4 241764.2001 1019655.3681 37007.4319
AXB24/PgnJ m 767521.45 241764.2001 1258845.4181 276197.4819
BALB/cJ m 632168.4 197399.6427 1033332.7401 231004.0599
BXA16/PgnJ m 590350.75 241764.2001 1081674.7181 99026.7819
BXD19/TyJ m 519851.6 241764.2001 1011175.5681 28527.6319
BXD28/TyJ m 660493.15 241764.2001 1151817.1181 169169.1819
BXH4/TyJ m 395316.0 241764.2001 886639.9681 0.0
C3H/HeJ m 487003.4 241764.2001 978327.3681 0.0
C57BL/6J m 821871.08 152905.1058 1132611.6417 511130.5183
CXB11/HiAJ m 616972.7 241764.2001 1108296.6681 125648.7319
CXB12/HiAJ m 1002838.45 241764.2001 1494162.4181 511514.4819
CXB13/HiAJ m 720076.4 197399.6427 1121240.7401 318912.0599
CXB1/ByJ m 672166.0 197399.6427 1073330.3401 271001.6599
CXB2/ByJ m 1164458.2 197399.6427 1565622.5401 763293.8599
CXB3/ByJ m 716804.95 241764.2001 1208128.9181 225480.9819
CXB4/ByJ m 533054.45 241764.2001 1024378.4181 41730.4819
CXB6/ByJ m 559260.9667 197399.6427 960425.3068 158096.6266
CXB7/ByJ m 648417.05 241764.2001 1139741.0181 157093.0819
CXB8/HiAJ m 840525.8 197399.6427 1241690.1401 439361.4599
CXB9/HiAJ m 1254755.7 197399.6427 1655920.0401 853591.3599
DBA/2J m 688231.225 170953.1053 1035649.7346 340812.7154




  GWAS USING LINEAR MIXED MODELS