Phenotype measure:   HMDPpheno8   margarate

ID, description, units MPD:50362   margarate   liver margarate (17:0) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver margarate (17:0) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1471236   None
Median of the strain means1366277   None
SD of the strain means± 503906
Coefficient of variation (CV)0.343
Min–max range of strain means639237   –   3253797   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 17465278119603.9 831679910457.328 2.2197 0.0195
Residuals 33 12364552491024.3 374683408818.918


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1525695.0 0.0   1   0.0 0.0 1525695.0, 1525695.0 0.11
A/J m 1189470.0 31567.0   2   22321.0 0.0265 1167149.0, 1211792.0 -0.56
AKR/J m 1133664.0 0.0   1   0.0 0.0 1133664.0, 1133664.0 -0.67
AXB10/PgnJ m 1031606.0 0.0   1   0.0 0.0 1031606.0, 1031606.0 -0.87
AXB12/PgnJ m 1435312.0 0.0   1   0.0 0.0 1435312.0, 1435312.0 -0.07
AXB13/PgnJ m 1054061.0 0.0   1   0.0 0.0 1054061.0, 1054061.0 -0.83
AXB15/PgnJ m 1376059.0 0.0   1   0.0 0.0 1376059.0, 1376059.0 -0.19
AXB19a/PgnJ m 1079251.0 0.0   1   0.0 0.0 1079251.0, 1079251.0 -0.78
AXB19b/PgnJ m 1070061.0 137122.0   2   96960.0 0.128 973102.0, 1167021.0 -0.8
AXB19/PgnJ m 1467990.0 0.0   1   0.0 0.0 1467990.0, 1467990.0 -0.01
AXB1/PgnJ m 1059479.0 0.0   1   0.0 0.0 1059479.0, 1059479.0 -0.82
AXB23/PgnJ m 1000370.0 0.0   1   0.0 0.0 1000370.0, 1000370.0 -0.93
AXB24/PgnJ m 1338409.0 357333.0   2   252673.0 0.267 1085737.0, 1591082.0 -0.26
AXB2/PgnJ m 1855261.0 0.0   1   0.0 0.0 1855261.0, 1855261.0 0.76
AXB4/PgnJ m 1033423.0 0.0   1   0.0 0.0 1033423.0, 1033423.0 -0.87
AXB5/PgnJ m 1064095.0 0.0   1   0.0 0.0 1064095.0, 1064095.0 -0.81
AXB6/PgnJ m 1338259.0 0.0   1   0.0 0.0 1338259.0, 1338259.0 -0.26
AXB8/PgnJ m 946791.0 0.0   1   0.0 0.0 946791.0, 946791.0 -1.04
BALB/cJ m 1944951.0 265382.0   3 153218.0 0.136 1638834.0, 2110106.0 0.94
BTBR T+ Itpr3tf/J m 912920.0 0.0   1   0.0 0.0 912920.0, 912920.0 -1.11
BUB/BnJ m 2940446.0 0.0   1   0.0 0.0 2940446.0, 2940446.0 2.92
BXA11/PgnJ m 1846339.0 0.0   1   0.0 0.0 1846339.0, 1846339.0 0.74
BXA12/PgnJ m 1932263.0 0.0   1   0.0 0.0 1932263.0, 1932263.0 0.91
BXA13/PgnJ m 1039165.0 0.0   1   0.0 0.0 1039165.0, 1039165.0 -0.86
BXA14/PgnJ m 813885.0 0.0   1   0.0 0.0 813885.0, 813885.0 -1.3
BXA16/PgnJ m 1133877.0 123360.0   2   87228.0 0.109 1046649.0, 1221106.0 -0.67
BXA1/PgnJ m 1920773.0 0.0   1   0.0 0.0 1920773.0, 1920773.0 0.89
BXA24/PgnJ m 1625206.0 0.0   1   0.0 0.0 1625206.0, 1625206.0 0.31
BXA25/PgnJ m 1926286.0 0.0   1   0.0 0.0 1926286.0, 1926286.0 0.9
BXA26/PgnJ m 1557048.0 0.0   1   0.0 0.0 1557048.0, 1557048.0 0.17
BXA2/PgnJ m 1446638.0 0.0   1   0.0 0.0 1446638.0, 1446638.0 -0.05
BXA4/PgnJ m 1584874.0 0.0   1   0.0 0.0 1584874.0, 1584874.0 0.23
BXA7/PgnJ m 829933.0 0.0   1   0.0 0.0 829933.0, 829933.0 -1.27
BXA8/PgnJ m 1183304.0 0.0   1   0.0 0.0 1183304.0, 1183304.0 -0.57
BXD11/TyJ m 970711.0 0.0   1   0.0 0.0 970711.0, 970711.0 -0.99
BXD12/TyJ m 1457965.0 0.0   1   0.0 0.0 1457965.0, 1457965.0 -0.03
BXD13/TyJ m 1643504.0 0.0   1   0.0 0.0 1643504.0, 1643504.0 0.34
BXD14/TyJ m 894602.0 0.0   1   0.0 0.0 894602.0, 894602.0 -1.14
BXD15/TyJ m 1773878.0 0.0   1   0.0 0.0 1773878.0, 1773878.0 0.6
BXD18/TyJ m 1802078.0 0.0   1   0.0 0.0 1802078.0, 1802078.0 0.66
BXD19/TyJ m 1426450.0 437566.0   2   309406.0 0.307 1117044.0, 1735856.0 -0.09
BXD1/TyJ m 1348992.0 0.0   1   0.0 0.0 1348992.0, 1348992.0 -0.24
BXD20/TyJ m 1224682.0 0.0   1   0.0 0.0 1224682.0, 1224682.0 -0.49
BXD21/TyJ m 1180664.0 0.0   1   0.0 0.0 1180664.0, 1180664.0 -0.58
BXD22/TyJ m 1308356.0 0.0   1   0.0 0.0 1308356.0, 1308356.0 -0.32
BXD24/TyJ m 1354762.0 0.0   1   0.0 0.0 1354762.0, 1354762.0 -0.23
BXD24/TyJ-Cep290rd16/J m 1323938.0 0.0   1   0.0 0.0 1323938.0, 1323938.0 -0.29
BXD28/TyJ m 1403630.0 30627.0   2   21657.0 0.0218 1381974.0, 1425287.0 -0.13
BXD29-Tlr4lps-2J/J m 1271856.0 0.0   1   0.0 0.0 1271856.0, 1271856.0 -0.4
BXD2/TyJ m 1237578.0 0.0   1   0.0 0.0 1237578.0, 1237578.0 -0.46
BXD32/TyJ m 2466548.0 0.0   1   0.0 0.0 2466548.0, 2466548.0 1.98
BXD33/TyJ m 639237.0 0.0   1   0.0 0.0 639237.0, 639237.0 -1.65
BXD34/TyJ m 2023741.0 0.0   1   0.0 0.0 2023741.0, 2023741.0 1.1
BXD36/TyJ m 1206280.0 0.0   1   0.0 0.0 1206280.0, 1206280.0 -0.53
BXD38/TyJ m 2264074.0 0.0   1   0.0 0.0 2264074.0, 2264074.0 1.57
BXD39/TyJ m 1154514.0 0.0   1   0.0 0.0 1154514.0, 1154514.0 -0.63
BXD40/TyJ m 1833827.0 0.0   1   0.0 0.0 1833827.0, 1833827.0 0.72
BXD42/TyJ m 1075522.0 0.0   1   0.0 0.0 1075522.0, 1075522.0 -0.79
BXD5/TyJ m 1554177.0 0.0   1   0.0 0.0 1554177.0, 1554177.0 0.16
BXD6/TyJ m 920483.0 0.0   1   0.0 0.0 920483.0, 920483.0 -1.09
BXD8/TyJ m 2032823.0 0.0   1   0.0 0.0 2032823.0, 2032823.0 1.11
BXD9/TyJ m 1572951.0 0.0   1   0.0 0.0 1572951.0, 1572951.0 0.2
BXH10/TyJ m 872946.0 0.0   1   0.0 0.0 872946.0, 872946.0 -1.19
BXH19/TyJ m 809251.0 0.0   1   0.0 0.0 809251.0, 809251.0 -1.31
BXH20/KccJ m 1728492.0 0.0   1   0.0 0.0 1728492.0, 1728492.0 0.51
BXH22/KccJ m 1479526.0 0.0   1   0.0 0.0 1479526.0, 1479526.0 0.02
BXH2/TyJ m 1110506.0 0.0   1   0.0 0.0 1110506.0, 1110506.0 -0.72
BXH4/TyJ m 1356495.0 139880.0   2   98910.0 0.103 1257585.0, 1455405.0 -0.23
BXH6/TyJ m 832686.0 0.0   1   0.0 0.0 832686.0, 832686.0 -1.27
BXH7/TyJ m 1437872.0 0.0   1   0.0 0.0 1437872.0, 1437872.0 -0.07
BXH8/TyJ m 1112094.0 0.0   1   0.0 0.0 1112094.0, 1112094.0 -0.71
BXH9/TyJ m 1339100.0 0.0   1   0.0 0.0 1339100.0, 1339100.0 -0.26
C3H/HeJ m 1227333.0 643528.0   2   455043.0 0.524 772290.0, 1682377.0 -0.48
C57BL/6J m 1996150.0 547218.0   5 244723.0 0.274 1228456.0, 2651516.0 1.04
C57L/J m 2978128.0 0.0   1   0.0 0.0 2978128.0, 2978128.0 2.99
C58/J m 1095730.0 0.0   1   0.0 0.0 1095730.0, 1095730.0 -0.75
CAST/EiJ m 761306.0 0.0   1   0.0 0.0 761306.0, 761306.0 -1.41
CBA/J m 1547764.0 0.0   1   0.0 0.0 1547764.0, 1547764.0 0.15
CE/J m 1692505.0 0.0   1   0.0 0.0 1692505.0, 1692505.0 0.44
CXB11/HiAJ m 1302782.0 7286.0   2   5152.0 0.00559 1297630.0, 1307934.0 -0.33
CXB12/HiAJ m 3253797.0 643855.0   2   455274.0 0.198 2798523.0, 3709071.0 3.54
CXB13/HiAJ m 1905503.0 70588.0   2   49913.0 0.037 1855590.0, 1955416.0 0.86
CXB1/ByJ m 1641776.0 747861.0   3 431778.0 0.456 918412.0, 2411936.0 0.34
CXB2/ByJ m 2854972.0 1205994.0   3 696281.0 0.422 1995180.0, 4233546.0 2.75
CXB3/ByJ m 2086439.0 6188.0   2   4376.0 0.00297 2082063.0, 2090814.0 1.22
CXB4/ByJ m 1781226.0 511725.0   2   361844.0 0.287 1419382.0, 2143070.0 0.62
CXB6/ByJ m 1196485.0 512384.0   3 295825.0 0.428 860855.0, 1786262.0 -0.55
CXB7/ByJ m 1685791.0 88792.0   2   62786.0 0.0527 1623006.0, 1748577.0 0.43
CXB8/HiAJ m 2276589.0 890019.0   3 513853.0 0.391 1706684.0, 3302176.0 1.6
CXB9/HiAJ m 2642719.0 1202210.0   3 694096.0 0.455 1568918.0, 3941540.0 2.32
DBA/2J m 1577159.0 416472.0   4 208236.0 0.264 1055661.0, 2033492.0 0.21
FVB/NJ m 1407488.0 0.0   1   0.0 0.0 1407488.0, 1407488.0 -0.13
I/LnJ m 999629.0 0.0   1   0.0 0.0 999629.0, 999629.0 -0.94
KK/HlJ m 1634770.0 0.0   1   0.0 0.0 1634770.0, 1634770.0 0.32
LG/J m 776303.0 0.0   1   0.0 0.0 776303.0, 776303.0 -1.38
LP/J m 970299.0 0.0   1   0.0 0.0 970299.0, 970299.0 -0.99
MA/MyJ m 1288574.0 0.0   1   0.0 0.0 1288574.0, 1288574.0 -0.36
NOD/ShiLtJ m 2059358.0 0.0   1   0.0 0.0 2059358.0, 2059358.0 1.17
NON/ShiLtJ m 999588.0 0.0   1   0.0 0.0 999588.0, 999588.0 -0.94
NZW/LacJ m 1856309.0 0.0   1   0.0 0.0 1856309.0, 1856309.0 0.76
PL/J m 1744926.0 0.0   1   0.0 0.0 1744926.0, 1744926.0 0.54
RIIIS/J m 1574459.0 0.0   1   0.0 0.0 1574459.0, 1574459.0 0.2
SEA/GnJ m 1871056.0 0.0   1   0.0 0.0 1871056.0, 1871056.0 0.79
SJL/J m 1248221.0 0.0   1   0.0 0.0 1248221.0, 1248221.0 -0.44
SM/J m 1216352.0 0.0   1   0.0 0.0 1216352.0, 1216352.0 -0.51
SWR/J m 1715574.0 0.0   1   0.0 0.0 1715574.0, 1715574.0 0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1189470.4 432829.8793 2070069.4106 308871.3894
AXB19b/PgnJ m 1070061.35 432829.8793 1950660.3606 189462.3394
AXB24/PgnJ m 1338409.2 432829.8793 2219008.2106 457810.1894
BALB/cJ m 1944951.4667 353404.1166 2663957.548 1225945.3853
BXA16/PgnJ m 1133877.15 432829.8793 2014476.1606 253278.1394
BXD19/TyJ m 1426450.25 432829.8793 2307049.2606 545851.2394
BXD28/TyJ m 1403630.35 432829.8793 2284229.3606 523031.3394
BXH4/TyJ m 1356495.05 432829.8793 2237094.0606 475896.0394
C3H/HeJ m 1227333.35 432829.8793 2107932.3606 346734.3394
C57BL/6J m 1996150.24 273745.6516 2553089.9558 1439210.5242
CXB11/HiAJ m 1302781.65 432829.8793 2183380.6606 422182.6394
CXB12/HiAJ m 3253796.8 432829.8793 4134395.8106 2373197.7894
CXB13/HiAJ m 1905503.05 432829.8793 2786102.0606 1024904.0394
CXB1/ByJ m 1641775.7 353404.1166 2360781.7813 922769.6187
CXB2/ByJ m 2854972.1 353404.1166 3573978.1813 2135966.0187
CXB3/ByJ m 2086438.6 432829.8793 2967037.6106 1205839.5894
CXB4/ByJ m 1781225.9 432829.8793 2661824.9106 900626.8894
CXB6/ByJ m 1196485.4 353404.1166 1915491.4813 477479.3187
CXB7/ByJ m 1685791.15 432829.8793 2566390.1606 805192.1394
CXB8/HiAJ m 2276588.6 353404.1166 2995594.6813 1557582.5187
CXB9/HiAJ m 2642719.1333 353404.1166 3361725.2147 1923713.052
DBA/2J m 1577159.125 306056.9427 2199836.6569 954481.5931




  GWAS USING LINEAR MIXED MODELS