Phenotype measure:   HMDPpheno8   GPC

ID, description, units MPD:50346   GPC   liver glycerophosphorylcholine (GPC) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver glycerophosphorylcholine (GPC) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1315392   None
Median of the strain means1260510   None
SD of the strain means± 512630
Coefficient of variation (CV)0.390
Min–max range of strain means265665   –   3256977   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 24016192725333.8 1143628225015.9 3.0427 0.0019
Residuals 34 12779412830907.2 375865083261.976


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1802319.0 0.0   1   0.0 0.0 1802319.0, 1802319.0 0.95
A/J m 1158355.0 228662.0   2   161689.0 0.197 996666.0, 1320044.0 -0.31
AKR/J m 1583617.0 0.0   1   0.0 0.0 1583617.0, 1583617.0 0.52
AXB10/PgnJ m 1465694.0 0.0   1   0.0 0.0 1465694.0, 1465694.0 0.29
AXB12/PgnJ m 1021107.0 0.0   1   0.0 0.0 1021107.0, 1021107.0 -0.57
AXB13/PgnJ m 1467611.0 0.0   1   0.0 0.0 1467611.0, 1467611.0 0.3
AXB15/PgnJ m 1335503.0 0.0   1   0.0 0.0 1335503.0, 1335503.0 0.04
AXB19a/PgnJ m 1141349.0 0.0   1   0.0 0.0 1141349.0, 1141349.0 -0.34
AXB19b/PgnJ m 919538.0 98481.0   2   69636.0 0.107 849902.0, 989174.0 -0.77
AXB19/PgnJ m 906598.0 0.0   1   0.0 0.0 906598.0, 906598.0 -0.8
AXB1/PgnJ m 346898.0 0.0   1   0.0 0.0 346898.0, 346898.0 -1.89
AXB23/PgnJ m 1345677.0 0.0   1   0.0 0.0 1345677.0, 1345677.0 0.06
AXB24/PgnJ m 1213072.0 586431.0   2   414669.0 0.483 798402.0, 1627741.0 -0.2
AXB2/PgnJ m 884643.0 0.0   1   0.0 0.0 884643.0, 884643.0 -0.84
AXB4/PgnJ m 624445.0 0.0   1   0.0 0.0 624445.0, 624445.0 -1.35
AXB5/PgnJ m 1251659.0 0.0   1   0.0 0.0 1251659.0, 1251659.0 -0.12
AXB6/PgnJ m 1094296.0 0.0   1   0.0 0.0 1094296.0, 1094296.0 -0.43
AXB8/PgnJ m 1720403.0 0.0   1   0.0 0.0 1720403.0, 1720403.0 0.79
BALB/cJ m 1321224.0 340887.0   3 196811.0 0.258 1028652.0, 1695556.0 0.01
BTBR T+ Itpr3tf/J m 2219113.0 0.0   1   0.0 0.0 2219113.0, 2219113.0 1.76
BUB/BnJ m 1185998.0 0.0   1   0.0 0.0 1185998.0, 1185998.0 -0.25
BXA11/PgnJ m 1371492.0 0.0   1   0.0 0.0 1371492.0, 1371492.0 0.11
BXA12/PgnJ m 667383.0 0.0   1   0.0 0.0 667383.0, 667383.0 -1.26
BXA13/PgnJ m 947423.0 0.0   1   0.0 0.0 947423.0, 947423.0 -0.72
BXA14/PgnJ m 1274085.0 0.0   1   0.0 0.0 1274085.0, 1274085.0 -0.08
BXA16/PgnJ m 1302877.0 211150.0   2   149306.0 0.162 1153571.0, 1452182.0 -0.02
BXA1/PgnJ m 1758342.0 0.0   1   0.0 0.0 1758342.0, 1758342.0 0.86
BXA24/PgnJ m 1905567.0 0.0   1   0.0 0.0 1905567.0, 1905567.0 1.15
BXA25/PgnJ m 1067645.0 0.0   1   0.0 0.0 1067645.0, 1067645.0 -0.48
BXA26/PgnJ m 1260145.0 0.0   1   0.0 0.0 1260145.0, 1260145.0 -0.11
BXA2/PgnJ m 1380255.0 0.0   1   0.0 0.0 1380255.0, 1380255.0 0.13
BXA4/PgnJ m 865227.0 0.0   1   0.0 0.0 865227.0, 865227.0 -0.88
BXA7/PgnJ m 1620220.0 0.0   1   0.0 0.0 1620220.0, 1620220.0 0.59
BXA8/PgnJ m 2430176.0 0.0   1   0.0 0.0 2430176.0, 2430176.0 2.17
BXD11/TyJ m 1132398.0 0.0   1   0.0 0.0 1132398.0, 1132398.0 -0.36
BXD12/TyJ m 968327.0 0.0   1   0.0 0.0 968327.0, 968327.0 -0.68
BXD13/TyJ m 1287575.0 0.0   1   0.0 0.0 1287575.0, 1287575.0 -0.05
BXD14/TyJ m 1200015.0 0.0   1   0.0 0.0 1200015.0, 1200015.0 -0.23
BXD15/TyJ m 1091524.0 0.0   1   0.0 0.0 1091524.0, 1091524.0 -0.44
BXD18/TyJ m 1148705.0 0.0   1   0.0 0.0 1148705.0, 1148705.0 -0.33
BXD19/TyJ m 1220376.0 190719.0   2   134859.0 0.156 1085518.0, 1355235.0 -0.19
BXD1/TyJ m 951690.0 0.0   1   0.0 0.0 951690.0, 951690.0 -0.71
BXD20/TyJ m 265665.0 0.0   1   0.0 0.0 265665.0, 265665.0 -2.05
BXD21/TyJ m 1154350.0 0.0   1   0.0 0.0 1154350.0, 1154350.0 -0.31
BXD22/TyJ m 769480.0 0.0   1   0.0 0.0 769480.0, 769480.0 -1.06
BXD24/TyJ m 1422721.0 0.0   1   0.0 0.0 1422721.0, 1422721.0 0.21
BXD24/TyJ-Cep290rd16/J m 1154462.0 0.0   1   0.0 0.0 1154462.0, 1154462.0 -0.31
BXD28/TyJ m 1312984.0 99852.0   2   70606.0 0.076 1242378.0, 1383590.0 0.0
BXD29-Tlr4lps-2J/J m 826320.0 0.0   1   0.0 0.0 826320.0, 826320.0 -0.95
BXD2/TyJ m 1028012.0 0.0   1   0.0 0.0 1028012.0, 1028012.0 -0.56
BXD32/TyJ m 1041016.0 0.0   1   0.0 0.0 1041016.0, 1041016.0 -0.54
BXD33/TyJ m 795550.0 0.0   1   0.0 0.0 795550.0, 795550.0 -1.01
BXD34/TyJ m 1078825.0 0.0   1   0.0 0.0 1078825.0, 1078825.0 -0.46
BXD36/TyJ m 1294092.0 0.0   1   0.0 0.0 1294092.0, 1294092.0 -0.04
BXD38/TyJ m 946691.0 0.0   1   0.0 0.0 946691.0, 946691.0 -0.72
BXD39/TyJ m 2016746.0 0.0   1   0.0 0.0 2016746.0, 2016746.0 1.37
BXD40/TyJ m 1229548.0 0.0   1   0.0 0.0 1229548.0, 1229548.0 -0.17
BXD42/TyJ m 825637.0 0.0   1   0.0 0.0 825637.0, 825637.0 -0.96
BXD5/TyJ m 1484272.0 0.0   1   0.0 0.0 1484272.0, 1484272.0 0.33
BXD6/TyJ m 964142.0 0.0   1   0.0 0.0 964142.0, 964142.0 -0.69
BXD8/TyJ m 959769.0 0.0   1   0.0 0.0 959769.0, 959769.0 -0.69
BXD9/TyJ m 1478239.0 0.0   1   0.0 0.0 1478239.0, 1478239.0 0.32
BXH10/TyJ m 1266662.0 0.0   1   0.0 0.0 1266662.0, 1266662.0 -0.1
BXH19/TyJ m 1143902.0 0.0   1   0.0 0.0 1143902.0, 1143902.0 -0.33
BXH20/KccJ m 1280152.0 0.0   1   0.0 0.0 1280152.0, 1280152.0 -0.07
BXH22/KccJ m 1491330.0 0.0   1   0.0 0.0 1491330.0, 1491330.0 0.34
BXH2/TyJ m 943922.0 0.0   1   0.0 0.0 943922.0, 943922.0 -0.72
BXH4/TyJ m 2284275.0 1186776.0   2   839177.0 0.52 1445097.0, 3123452.0 1.89
BXH6/TyJ m 1550298.0 0.0   1   0.0 0.0 1550298.0, 1550298.0 0.46
BXH7/TyJ m 593393.0 0.0   1   0.0 0.0 593393.0, 593393.0 -1.41
BXH8/TyJ m 1791950.0 0.0   1   0.0 0.0 1791950.0, 1791950.0 0.93
BXH9/TyJ m 1345229.0 0.0   1   0.0 0.0 1345229.0, 1345229.0 0.06
C3H/HeJ m 1260876.0 356611.0   2   252162.0 0.283 1008713.0, 1513038.0 -0.11
C57BL/6J m 1202422.0 114246.0   5 51093.0 0.095 1084191.0, 1325617.0 -0.22
C57L/J m 498516.0 0.0   1   0.0 0.0 498516.0, 498516.0 -1.59
C58/J m 541216.0 0.0   1   0.0 0.0 541216.0, 541216.0 -1.51
CAST/EiJ m 1633434.0 0.0   1   0.0 0.0 1633434.0, 1633434.0 0.62
CBA/J m 1496436.0 0.0   1   0.0 0.0 1496436.0, 1496436.0 0.35
CE/J m 2451182.0 0.0   1   0.0 0.0 2451182.0, 2451182.0 2.22
CXB11/HiAJ m 1270131.0 792637.0   2   560479.0 0.624 709652.0, 1830610.0 -0.09
CXB12/HiAJ m 2662594.0 518994.0   2   366984.0 0.195 2295610.0, 3029578.0 2.63
CXB13/HiAJ m 1349152.0 558052.0   3 322191.0 0.414 776237.0, 1891047.0 0.07
CXB1/ByJ m 1624393.0 123703.0   3 71420.0 0.0762 1533852.0, 1765340.0 0.6
CXB2/ByJ m 1695125.0 468717.0   3 270614.0 0.277 1297245.0, 2211814.0 0.74
CXB3/ByJ m 2047492.0 45623.0   2   32260.0 0.0223 2015232.0, 2079752.0 1.43
CXB4/ByJ m 2457798.0 664639.0   2   469971.0 0.27 1987828.0, 2927769.0 2.23
CXB6/ByJ m 1489466.0 310749.0   3 179411.0 0.209 1131412.0, 1688814.0 0.34
CXB7/ByJ m 1755612.0 317478.0   2   224491.0 0.181 1531121.0, 1980103.0 0.86
CXB8/HiAJ m 2968801.0 1723003.0   3 994776.0 0.58 1857117.0, 4953578.0 3.23
CXB9/HiAJ m 3256977.0 923346.0   3 533094.0 0.283 2443486.0, 4260583.0 3.79
DBA/2J m 1034553.0 174683.0   4 87342.0 0.169 792202.0, 1182224.0 -0.55
FVB/NJ m 679711.0 0.0   1   0.0 0.0 679711.0, 679711.0 -1.24
I/LnJ m 771480.0 0.0   1   0.0 0.0 771480.0, 771480.0 -1.06
KK/HlJ m 1807558.0 0.0   1   0.0 0.0 1807558.0, 1807558.0 0.96
LG/J m 1035374.0 0.0   1   0.0 0.0 1035374.0, 1035374.0 -0.55
LP/J m 967566.0 0.0   1   0.0 0.0 967566.0, 967566.0 -0.68
MA/MyJ m 1646567.0 0.0   1   0.0 0.0 1646567.0, 1646567.0 0.65
NOD/ShiLtJ m 1517859.0 0.0   1   0.0 0.0 1517859.0, 1517859.0 0.39
NON/ShiLtJ m 1244726.0 0.0   1   0.0 0.0 1244726.0, 1244726.0 -0.14
NZW/LacJ m 1329874.0 0.0   1   0.0 0.0 1329874.0, 1329874.0 0.03
PL/J m 1291903.0 0.0   1   0.0 0.0 1291903.0, 1291903.0 -0.05
RIIIS/J m 1198876.0 0.0   1   0.0 0.0 1198876.0, 1198876.0 -0.23
SEA/GnJ m 1262334.0 0.0   1   0.0 0.0 1262334.0, 1262334.0 -0.1
SJL/J m 670362.0 0.0   1   0.0 0.0 670362.0, 670362.0 -1.26
SM/J m 829626.0 0.0   1   0.0 0.0 829626.0, 829626.0 -0.95
SWR/J m 1881376.0 0.0   1   0.0 0.0 1881376.0, 1881376.0 1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1158355.0 433511.8702 2039357.118 277352.882
AXB19b/PgnJ m 919537.85 433511.8702 1800539.968 38535.732
AXB24/PgnJ m 1213071.7 433511.8702 2094073.818 332069.582
BALB/cJ m 1321224.2667 353960.9598 2040559.4838 601889.0495
BXA16/PgnJ m 1302876.6 433511.8702 2183878.718 421874.482
BXD19/TyJ m 1220376.05 433511.8702 2101378.168 339373.932
BXD28/TyJ m 1312983.9 433511.8702 2193986.018 431981.782
BXH4/TyJ m 2284274.65 433511.8702 3165276.768 1403272.532
C3H/HeJ m 1260875.6 433511.8702 2141877.718 379873.482
C57BL/6J m 1202422.48 274176.9805 1759617.1433 645227.8167
CXB11/HiAJ m 1270130.65 433511.8702 2151132.768 389128.532
CXB12/HiAJ m 2662594.0 433511.8702 3543596.118 1781591.882
CXB13/HiAJ m 1349152.1 353960.9598 2068487.3171 629816.8829
CXB1/ByJ m 1624392.6 353960.9598 2343727.8171 905057.3829
CXB2/ByJ m 1695124.8 353960.9598 2414460.0171 975789.5829
CXB3/ByJ m 2047492.15 433511.8702 2928494.268 1166490.032
CXB4/ByJ m 2457798.4 433511.8702 3338800.518 1576796.282
CXB6/ByJ m 1489466.0 353960.9598 2208801.2171 770130.7829
CXB7/ByJ m 1755612.2 433511.8702 2636614.318 874610.082
CXB8/HiAJ m 2968800.7 353960.9598 3688135.9171 2249465.4829
CXB9/HiAJ m 3256976.7 353960.9598 3976311.9171 2537641.4829
DBA/2J m 1034553.15 306539.1832 1657515.7219 411590.5781




  GWAS USING LINEAR MIXED MODELS