Phenotype measure:   HMDPpheno8   cytidine_DPC

ID, description, units MPD:50345   cytidine_DPC   liver cytidine 5'-diphosphocholine (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - liver cytidine 5'-diphosphocholine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means206149   None
Median of the strain means207116   None
SD of the strain means± 68044
Coefficient of variation (CV)0.330
Min–max range of strain means71148   –   428458   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 94523357777.9686 4501112275.1414 1.5652 0.1195
Residuals 34 97775575818.917 2875752229.9681


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 226530.0 0.0   1   0.0 0.0 226530.0, 226530.0 0.3
A/J m 293518.0 91385.0   2   64619.0 0.311 228899.0, 358138.0 1.28
AKR/J m 138923.0 0.0   1   0.0 0.0 138923.0, 138923.0 -0.99
AXB10/PgnJ m 286544.0 0.0   1   0.0 0.0 286544.0, 286544.0 1.18
AXB12/PgnJ m 176022.0 0.0   1   0.0 0.0 176022.0, 176022.0 -0.44
AXB13/PgnJ m 297038.0 0.0   1   0.0 0.0 297038.0, 297038.0 1.34
AXB15/PgnJ m 306927.0 0.0   1   0.0 0.0 306927.0, 306927.0 1.48
AXB19a/PgnJ m 271829.0 0.0   1   0.0 0.0 271829.0, 271829.0 0.97
AXB19b/PgnJ m 291043.0 33055.0   2   23373.0 0.114 267670.0, 314416.0 1.25
AXB19/PgnJ m 221930.0 0.0   1   0.0 0.0 221930.0, 221930.0 0.23
AXB1/PgnJ m 142381.0 0.0   1   0.0 0.0 142381.0, 142381.0 -0.94
AXB23/PgnJ m 242673.0 0.0   1   0.0 0.0 242673.0, 242673.0 0.54
AXB24/PgnJ m 273350.0 68529.0   2   48457.0 0.251 224893.0, 321808.0 0.99
AXB2/PgnJ m 307040.0 0.0   1   0.0 0.0 307040.0, 307040.0 1.48
AXB4/PgnJ m 241712.0 0.0   1   0.0 0.0 241712.0, 241712.0 0.52
AXB5/PgnJ m 156943.0 0.0   1   0.0 0.0 156943.0, 156943.0 -0.72
AXB6/PgnJ m 240376.0 0.0   1   0.0 0.0 240376.0, 240376.0 0.5
AXB8/PgnJ m 274908.0 0.0   1   0.0 0.0 274908.0, 274908.0 1.01
BALB/cJ m 258944.0 52346.0   3 30222.0 0.202 226918.0, 319351.0 0.78
BTBR T+ Itpr3tf/J m 125006.0 0.0   1   0.0 0.0 125006.0, 125006.0 -1.19
BUB/BnJ m 312732.0 0.0   1   0.0 0.0 312732.0, 312732.0 1.57
BXA11/PgnJ m 236239.0 0.0   1   0.0 0.0 236239.0, 236239.0 0.44
BXA12/PgnJ m 126165.0 0.0   1   0.0 0.0 126165.0, 126165.0 -1.18
BXA13/PgnJ m 358415.0 0.0   1   0.0 0.0 358415.0, 358415.0 2.24
BXA14/PgnJ m 268341.0 0.0   1   0.0 0.0 268341.0, 268341.0 0.91
BXA16/PgnJ m 193564.0 26700.0   2   18880.0 0.138 174684.0, 212444.0 -0.18
BXA1/PgnJ m 250514.0 0.0   1   0.0 0.0 250514.0, 250514.0 0.65
BXA24/PgnJ m 311981.0 0.0   1   0.0 0.0 311981.0, 311981.0 1.56
BXA25/PgnJ m 237264.0 0.0   1   0.0 0.0 237264.0, 237264.0 0.46
BXA26/PgnJ m 269458.0 0.0   1   0.0 0.0 269458.0, 269458.0 0.93
BXA2/PgnJ m 213423.0 0.0   1   0.0 0.0 213423.0, 213423.0 0.11
BXA4/PgnJ m 114799.0 0.0   1   0.0 0.0 114799.0, 114799.0 -1.34
BXA7/PgnJ m 231140.0 0.0   1   0.0 0.0 231140.0, 231140.0 0.37
BXA8/PgnJ m 234539.0 0.0   1   0.0 0.0 234539.0, 234539.0 0.42
BXD11/TyJ m 156524.0 0.0   1   0.0 0.0 156524.0, 156524.0 -0.73
BXD12/TyJ m 119948.0 0.0   1   0.0 0.0 119948.0, 119948.0 -1.27
BXD13/TyJ m 114665.0 0.0   1   0.0 0.0 114665.0, 114665.0 -1.34
BXD14/TyJ m 209160.0 0.0   1   0.0 0.0 209160.0, 209160.0 0.04
BXD15/TyJ m 188821.0 0.0   1   0.0 0.0 188821.0, 188821.0 -0.25
BXD18/TyJ m 217965.0 0.0   1   0.0 0.0 217965.0, 217965.0 0.17
BXD19/TyJ m 202522.0 93208.0   2   65908.0 0.46 136614.0, 268430.0 -0.05
BXD1/TyJ m 183022.0 0.0   1   0.0 0.0 183022.0, 183022.0 -0.34
BXD20/TyJ m 158320.0 0.0   1   0.0 0.0 158320.0, 158320.0 -0.7
BXD21/TyJ m 296428.0 0.0   1   0.0 0.0 296428.0, 296428.0 1.33
BXD22/TyJ m 177740.0 0.0   1   0.0 0.0 177740.0, 177740.0 -0.42
BXD24/TyJ m 151431.0 0.0   1   0.0 0.0 151431.0, 151431.0 -0.8
BXD24/TyJ-Cep290rd16/J m 71148.0 0.0   1   0.0 0.0 71148.0, 71148.0 -1.98
BXD28/TyJ m 165153.0 53478.0   2   37815.0 0.324 127339.0, 202968.0 -0.6
BXD29-Tlr4lps-2J/J m 182274.0 0.0   1   0.0 0.0 182274.0, 182274.0 -0.35
BXD2/TyJ m 211808.0 0.0   1   0.0 0.0 211808.0, 211808.0 0.08
BXD32/TyJ m 128797.0 0.0   1   0.0 0.0 128797.0, 128797.0 -1.14
BXD33/TyJ m 101544.0 0.0   1   0.0 0.0 101544.0, 101544.0 -1.54
BXD34/TyJ m 108861.0 0.0   1   0.0 0.0 108861.0, 108861.0 -1.43
BXD36/TyJ m 96982.0 0.0   1   0.0 0.0 96982.0, 96982.0 -1.6
BXD38/TyJ m 91710.0 0.0   1   0.0 0.0 91710.0, 91710.0 -1.68
BXD39/TyJ m 161369.0 0.0   1   0.0 0.0 161369.0, 161369.0 -0.66
BXD40/TyJ m 84321.0 0.0   1   0.0 0.0 84321.0, 84321.0 -1.79
BXD42/TyJ m 169563.0 0.0   1   0.0 0.0 169563.0, 169563.0 -0.54
BXD5/TyJ m 231313.0 0.0   1   0.0 0.0 231313.0, 231313.0 0.37
BXD6/TyJ m 119078.0 0.0   1   0.0 0.0 119078.0, 119078.0 -1.28
BXD8/TyJ m 135740.0 0.0   1   0.0 0.0 135740.0, 135740.0 -1.03
BXD9/TyJ m 143039.0 0.0   1   0.0 0.0 143039.0, 143039.0 -0.93
BXH10/TyJ m 192153.0 0.0   1   0.0 0.0 192153.0, 192153.0 -0.21
BXH19/TyJ m 132111.0 0.0   1   0.0 0.0 132111.0, 132111.0 -1.09
BXH20/KccJ m 137748.0 0.0   1   0.0 0.0 137748.0, 137748.0 -1.01
BXH22/KccJ m 135007.0 0.0   1   0.0 0.0 135007.0, 135007.0 -1.05
BXH2/TyJ m 186935.0 0.0   1   0.0 0.0 186935.0, 186935.0 -0.28
BXH4/TyJ m 205073.0 15353.0   2   10856.0 0.0749 194217.0, 215930.0 -0.02
BXH6/TyJ m 200456.0 0.0   1   0.0 0.0 200456.0, 200456.0 -0.08
BXH7/TyJ m 145254.0 0.0   1   0.0 0.0 145254.0, 145254.0 -0.89
BXH8/TyJ m 214652.0 0.0   1   0.0 0.0 214652.0, 214652.0 0.12
BXH9/TyJ m 181169.0 0.0   1   0.0 0.0 181169.0, 181169.0 -0.37
C3H/HeJ m 219625.0 9195.0   2   6502.0 0.0419 213122.0, 226127.0 0.2
C57BL/6J m 246399.0 63761.0   5 28515.0 0.259 157946.0, 327336.0 0.59
C57L/J m 144759.0 0.0   1   0.0 0.0 144759.0, 144759.0 -0.9
C58/J m 148596.0 0.0   1   0.0 0.0 148596.0, 148596.0 -0.85
CAST/EiJ m 428458.0 0.0   1   0.0 0.0 428458.0, 428458.0 3.27
CBA/J m 183474.0 0.0   1   0.0 0.0 183474.0, 183474.0 -0.33
CE/J m 245324.0 0.0   1   0.0 0.0 245324.0, 245324.0 0.58
CXB11/HiAJ m 222135.0 65415.0   2   46255.0 0.294 175879.0, 268390.0 0.23
CXB12/HiAJ m 270130.0 10077.0   2   7126.0 0.0373 263004.0, 277256.0 0.94
CXB13/HiAJ m 337331.0 65903.0   3 38049.0 0.195 272964.0, 404669.0 1.93
CXB1/ByJ m 260100.0 39182.0   3 22622.0 0.151 223978.0, 301754.0 0.79
CXB2/ByJ m 221994.0 40329.0   3 23284.0 0.182 177745.0, 256686.0 0.23
CXB3/ByJ m 265594.0 8356.0   2   5909.0 0.0315 259685.0, 271503.0 0.87
CXB4/ByJ m 239912.0 28762.0   2   20338.0 0.12 219574.0, 260250.0 0.5
CXB6/ByJ m 318927.0 71091.0   3 41044.0 0.223 270512.0, 400544.0 1.66
CXB7/ByJ m 254632.0 6410.0   2   4532.0 0.0252 250100.0, 259164.0 0.71
CXB8/HiAJ m 287110.0 16292.0   3 9406.0 0.0567 275305.0, 305698.0 1.19
CXB9/HiAJ m 306203.0 90467.0   3 52231.0 0.295 241704.0, 409615.0 1.47
DBA/2J m 238642.0 25671.0   4 12836.0 0.108 218658.0, 274512.0 0.48
FVB/NJ m 236885.0 0.0   1   0.0 0.0 236885.0, 236885.0 0.45
I/LnJ m 191357.0 0.0   1   0.0 0.0 191357.0, 191357.0 -0.22
KK/HlJ m 185106.0 0.0   1   0.0 0.0 185106.0, 185106.0 -0.31
LG/J m 165903.0 0.0   1   0.0 0.0 165903.0, 165903.0 -0.59
LP/J m 140500.0 0.0   1   0.0 0.0 140500.0, 140500.0 -0.96
MA/MyJ m 252565.0 0.0   1   0.0 0.0 252565.0, 252565.0 0.68
NOD/ShiLtJ m 217425.0 0.0   1   0.0 0.0 217425.0, 217425.0 0.17
NON/ShiLtJ m 153997.0 0.0   1   0.0 0.0 153997.0, 153997.0 -0.77
NZW/LacJ m 139015.0 0.0   1   0.0 0.0 139015.0, 139015.0 -0.99
PL/J m 246948.0 0.0   1   0.0 0.0 246948.0, 246948.0 0.6
RIIIS/J m 103713.0 0.0   1   0.0 0.0 103713.0, 103713.0 -1.51
SEA/GnJ m 256809.0 0.0   1   0.0 0.0 256809.0, 256809.0 0.74
SJL/J m 155217.0 0.0   1   0.0 0.0 155217.0, 155217.0 -0.75
SM/J m 134718.0 0.0   1   0.0 0.0 134718.0, 134718.0 -1.05
SWR/J m 190266.0 0.0   1   0.0 0.0 190266.0, 190266.0 -0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 293518.3 37919.337 370579.6643 216456.9357
AXB19b/PgnJ m 291042.85 37919.337 368104.2143 213981.4857
AXB24/PgnJ m 273350.25 37919.337 350411.6143 196288.8857
BALB/cJ m 258944.4667 30961.009 321864.8072 196024.1262
BXA16/PgnJ m 193564.25 37919.337 270625.6143 116502.8857
BXD19/TyJ m 202522.3 37919.337 279583.6643 125460.9357
BXD28/TyJ m 165153.3 37919.337 242214.6643 88091.9357
BXH4/TyJ m 205073.4 37919.337 282134.7643 128012.0357
C3H/HeJ m 219624.55 37919.337 296685.9143 142563.1857
C57BL/6J m 246398.66 23982.2944 295136.5462 197660.7738
CXB11/HiAJ m 222134.75 37919.337 299196.1143 145073.3857
CXB12/HiAJ m 270130.25 37919.337 347191.6143 193068.8857
CXB13/HiAJ m 337330.6333 30961.009 400250.9738 274410.2928
CXB1/ByJ m 260100.1667 30961.009 323020.5072 197179.8262
CXB2/ByJ m 221994.2 30961.009 284914.5405 159073.8595
CXB3/ByJ m 265593.75 37919.337 342655.1143 188532.3857
CXB4/ByJ m 239911.75 37919.337 316973.1143 162850.3857
CXB6/ByJ m 318926.8333 30961.009 381847.1738 256006.4928
CXB7/ByJ m 254632.15 37919.337 331693.5143 177570.7857
CXB8/HiAJ m 287110.3667 30961.009 350030.7072 224190.0262
CXB9/HiAJ m 306202.6333 30961.009 369122.9738 243282.2928
DBA/2J m 238641.5 26813.0203 293132.1133 184150.8867




  GWAS USING LINEAR MIXED MODELS