Phenotype measure:   HMDPpheno8   choline_phosphate

ID, description, units MPD:50344   choline_phosphate   choline phosphate (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno8 - choline phosphate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means2462068   None
Median of the strain means2272204   None
SD of the strain means± 891638
Coefficient of variation (CV)0.362
Min–max range of strain means1448292   –   7958098   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 14255035976310.6 678811236967.17 4.8405 < 0.0001
Residuals 34 4768047431144.72 140236689151.315


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 2448486.0 0.0   1   0.0 0.0 2448486.0, 2448486.0 -0.02
A/J m 2777933.0 127113.0   2   89883.0 0.0458 2688050.0, 2867816.0 0.35
AKR/J m 2951390.0 0.0   1   0.0 0.0 2951390.0, 2951390.0 0.55
AXB10/PgnJ m 1815761.0 0.0   1   0.0 0.0 1815761.0, 1815761.0 -0.72
AXB12/PgnJ m 2008304.0 0.0   1   0.0 0.0 2008304.0, 2008304.0 -0.51
AXB13/PgnJ m 1537008.0 0.0   1   0.0 0.0 1537008.0, 1537008.0 -1.04
AXB15/PgnJ m 2042124.0 0.0   1   0.0 0.0 2042124.0, 2042124.0 -0.47
AXB19a/PgnJ m 2095066.0 0.0   1   0.0 0.0 2095066.0, 2095066.0 -0.41
AXB19b/PgnJ m 3072671.0 243945.0   2   172495.0 0.0794 2900176.0, 3245166.0 0.68
AXB19/PgnJ m 2622920.0 0.0   1   0.0 0.0 2622920.0, 2622920.0 0.18
AXB1/PgnJ m 3687891.0 0.0   1   0.0 0.0 3687891.0, 3687891.0 1.37
AXB23/PgnJ m 2465262.0 0.0   1   0.0 0.0 2465262.0, 2465262.0 0.0
AXB24/PgnJ m 2287413.0 21112.0   2   14928.0 0.00923 2272485.0, 2302341.0 -0.2
AXB2/PgnJ m 2552308.0 0.0   1   0.0 0.0 2552308.0, 2552308.0 0.1
AXB4/PgnJ m 1715669.0 0.0   1   0.0 0.0 1715669.0, 1715669.0 -0.84
AXB5/PgnJ m 1516625.0 0.0   1   0.0 0.0 1516625.0, 1516625.0 -1.06
AXB6/PgnJ m 2108660.0 0.0   1   0.0 0.0 2108660.0, 2108660.0 -0.4
AXB8/PgnJ m 2463585.0 0.0   1   0.0 0.0 2463585.0, 2463585.0 0.0
BALB/cJ m 2092464.0 489927.0   3 282860.0 0.234 1779822.0, 2657099.0 -0.41
BTBR T+ Itpr3tf/J m 2065461.0 0.0   1   0.0 0.0 2065461.0, 2065461.0 -0.44
BUB/BnJ m 3325320.0 0.0   1   0.0 0.0 3325320.0, 3325320.0 0.97
BXA11/PgnJ m 2044852.0 0.0   1   0.0 0.0 2044852.0, 2044852.0 -0.47
BXA12/PgnJ m 2111098.0 0.0   1   0.0 0.0 2111098.0, 2111098.0 -0.39
BXA13/PgnJ m 2210002.0 0.0   1   0.0 0.0 2210002.0, 2210002.0 -0.28
BXA14/PgnJ m 4580564.0 0.0   1   0.0 0.0 4580564.0, 4580564.0 2.38
BXA16/PgnJ m 1844410.0 810802.0   2   573323.0 0.44 1271087.0, 2417733.0 -0.69
BXA1/PgnJ m 1838130.0 0.0   1   0.0 0.0 1838130.0, 1838130.0 -0.7
BXA24/PgnJ m 1823151.0 0.0   1   0.0 0.0 1823151.0, 1823151.0 -0.72
BXA25/PgnJ m 1848357.0 0.0   1   0.0 0.0 1848357.0, 1848357.0 -0.69
BXA26/PgnJ m 1448292.0 0.0   1   0.0 0.0 1448292.0, 1448292.0 -1.14
BXA2/PgnJ m 1882557.0 0.0   1   0.0 0.0 1882557.0, 1882557.0 -0.65
BXA4/PgnJ m 1857402.0 0.0   1   0.0 0.0 1857402.0, 1857402.0 -0.68
BXA7/PgnJ m 1955873.0 0.0   1   0.0 0.0 1955873.0, 1955873.0 -0.57
BXA8/PgnJ m 2008874.0 0.0   1   0.0 0.0 2008874.0, 2008874.0 -0.51
BXD11/TyJ m 2912960.0 0.0   1   0.0 0.0 2912960.0, 2912960.0 0.51
BXD12/TyJ m 2283027.0 0.0   1   0.0 0.0 2283027.0, 2283027.0 -0.2
BXD13/TyJ m 2997466.0 0.0   1   0.0 0.0 2997466.0, 2997466.0 0.6
BXD14/TyJ m 2509778.0 0.0   1   0.0 0.0 2509778.0, 2509778.0 0.05
BXD15/TyJ m 2903140.0 0.0   1   0.0 0.0 2903140.0, 2903140.0 0.49
BXD18/TyJ m 3417024.0 0.0   1   0.0 0.0 3417024.0, 3417024.0 1.07
BXD19/TyJ m 2476750.0 10315.0   2   7294.0 0.00416 2469456.0, 2484044.0 0.02
BXD1/TyJ m 2082322.0 0.0   1   0.0 0.0 2082322.0, 2082322.0 -0.43
BXD20/TyJ m 1799284.0 0.0   1   0.0 0.0 1799284.0, 1799284.0 -0.74
BXD21/TyJ m 3833251.0 0.0   1   0.0 0.0 3833251.0, 3833251.0 1.54
BXD22/TyJ m 3163412.0 0.0   1   0.0 0.0 3163412.0, 3163412.0 0.79
BXD24/TyJ m 3294911.0 0.0   1   0.0 0.0 3294911.0, 3294911.0 0.93
BXD24/TyJ-Cep290rd16/J m 3322514.0 0.0   1   0.0 0.0 3322514.0, 3322514.0 0.97
BXD28/TyJ m 1728588.0 151528.0   2   107146.0 0.0877 1621441.0, 1835734.0 -0.82
BXD29-Tlr4lps-2J/J m 2177838.0 0.0   1   0.0 0.0 2177838.0, 2177838.0 -0.32
BXD2/TyJ m 3084400.0 0.0   1   0.0 0.0 3084400.0, 3084400.0 0.7
BXD32/TyJ m 1454042.0 0.0   1   0.0 0.0 1454042.0, 1454042.0 -1.13
BXD33/TyJ m 1993615.0 0.0   1   0.0 0.0 1993615.0, 1993615.0 -0.53
BXD34/TyJ m 1879470.0 0.0   1   0.0 0.0 1879470.0, 1879470.0 -0.65
BXD36/TyJ m 2995610.0 0.0   1   0.0 0.0 2995610.0, 2995610.0 0.6
BXD38/TyJ m 2632316.0 0.0   1   0.0 0.0 2632316.0, 2632316.0 0.19
BXD39/TyJ m 1584107.0 0.0   1   0.0 0.0 1584107.0, 1584107.0 -0.98
BXD40/TyJ m 2469192.0 0.0   1   0.0 0.0 2469192.0, 2469192.0 0.01
BXD42/TyJ m 1872778.0 0.0   1   0.0 0.0 1872778.0, 1872778.0 -0.66
BXD5/TyJ m 2287893.0 0.0   1   0.0 0.0 2287893.0, 2287893.0 -0.2
BXD6/TyJ m 2386541.0 0.0   1   0.0 0.0 2386541.0, 2386541.0 -0.08
BXD8/TyJ m 1640692.0 0.0   1   0.0 0.0 1640692.0, 1640692.0 -0.92
BXD9/TyJ m 2527779.0 0.0   1   0.0 0.0 2527779.0, 2527779.0 0.07
BXH10/TyJ m 2261380.0 0.0   1   0.0 0.0 2261380.0, 2261380.0 -0.23
BXH19/TyJ m 2667168.0 0.0   1   0.0 0.0 2667168.0, 2667168.0 0.23
BXH20/KccJ m 1638943.0 0.0   1   0.0 0.0 1638943.0, 1638943.0 -0.92
BXH22/KccJ m 2355801.0 0.0   1   0.0 0.0 2355801.0, 2355801.0 -0.12
BXH2/TyJ m 1712697.0 0.0   1   0.0 0.0 1712697.0, 1712697.0 -0.84
BXH4/TyJ m 1996146.0 117639.0   2   83183.0 0.0589 1912963.0, 2079330.0 -0.52
BXH6/TyJ m 2161043.0 0.0   1   0.0 0.0 2161043.0, 2161043.0 -0.34
BXH7/TyJ m 2489929.0 0.0   1   0.0 0.0 2489929.0, 2489929.0 0.03
BXH8/TyJ m 1763494.0 0.0   1   0.0 0.0 1763494.0, 1763494.0 -0.78
BXH9/TyJ m 2135423.0 0.0   1   0.0 0.0 2135423.0, 2135423.0 -0.37
C3H/HeJ m 3385276.0 1000200.0   2   707248.0 0.295 2678027.0, 4092524.0 1.04
C57BL/6J m 1711292.0 338128.0   5 151216.0 0.198 1368847.0, 2161936.0 -0.84
C57L/J m 2203860.0 0.0   1   0.0 0.0 2203860.0, 2203860.0 -0.29
C58/J m 1952944.0 0.0   1   0.0 0.0 1952944.0, 1952944.0 -0.57
CAST/EiJ m 7958098.0 0.0   1   0.0 0.0 7958098.0, 7958098.0 6.16
CBA/J m 2476613.0 0.0   1   0.0 0.0 2476613.0, 2476613.0 0.02
CE/J m 2227715.0 0.0   1   0.0 0.0 2227715.0, 2227715.0 -0.26
CXB11/HiAJ m 1610319.0 9003.0   2   6366.0 0.00559 1603953.0, 1616686.0 -0.96
CXB12/HiAJ m 2027840.0 369802.0   2   261489.0 0.182 1766351.0, 2289330.0 -0.49
CXB13/HiAJ m 2567598.0 257001.0   3 148380.0 0.1 2390705.0, 2862396.0 0.12
CXB1/ByJ m 2563161.0 249358.0   3 143967.0 0.0973 2313853.0, 2812570.0 0.11
CXB2/ByJ m 1596906.0 150219.0   3 86729.0 0.0941 1453174.0, 1752864.0 -0.97
CXB3/ByJ m 2415513.0 418673.0   2   296046.0 0.173 2119466.0, 2711559.0 -0.05
CXB4/ByJ m 2152896.0 85444.0   2   60418.0 0.0397 2092478.0, 2213314.0 -0.35
CXB6/ByJ m 1660704.0 65043.0   3 37553.0 0.0392 1593788.0, 1723697.0 -0.9
CXB7/ByJ m 1782459.0 314997.0   2   222736.0 0.177 1559722.0, 2005195.0 -0.76
CXB8/HiAJ m 1928275.0 120467.0   3 69552.0 0.0625 1814779.0, 2054675.0 -0.6
CXB9/HiAJ m 1462763.0 229191.0   3 132323.0 0.157 1198385.0, 1605271.0 -1.12
DBA/2J m 2790319.0 631683.0   4 315842.0 0.226 2195602.0, 3682552.0 0.37
FVB/NJ m 6112807.0 0.0   1   0.0 0.0 6112807.0, 6112807.0 4.09
I/LnJ m 2383050.0 0.0   1   0.0 0.0 2383050.0, 2383050.0 -0.09
KK/HlJ m 1965761.0 0.0   1   0.0 0.0 1965761.0, 1965761.0 -0.56
LG/J m 3309700.0 0.0   1   0.0 0.0 3309700.0, 3309700.0 0.95
LP/J m 2846539.0 0.0   1   0.0 0.0 2846539.0, 2846539.0 0.43
MA/MyJ m 3175941.0 0.0   1   0.0 0.0 3175941.0, 3175941.0 0.8
NOD/ShiLtJ m 2133986.0 0.0   1   0.0 0.0 2133986.0, 2133986.0 -0.37
NON/ShiLtJ m 2772948.0 0.0   1   0.0 0.0 2772948.0, 2772948.0 0.35
NZW/LacJ m 3599741.0 0.0   1   0.0 0.0 3599741.0, 3599741.0 1.28
PL/J m 2829339.0 0.0   1   0.0 0.0 2829339.0, 2829339.0 0.41
RIIIS/J m 3634729.0 0.0   1   0.0 0.0 3634729.0, 3634729.0 1.32
SEA/GnJ m 2969276.0 0.0   1   0.0 0.0 2969276.0, 2969276.0 0.57
SJL/J m 2709154.0 0.0   1   0.0 0.0 2709154.0, 2709154.0 0.28
SM/J m 3043802.0 0.0   1   0.0 0.0 3043802.0, 3043802.0 0.65
SWR/J m 3019330.0 0.0   1   0.0 0.0 3019330.0, 3019330.0 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 2777933.15 264798.6869 3316068.8275 2239797.4725
AXB19b/PgnJ m 3072671.25 264798.6869 3610806.9275 2534535.5725
AXB24/PgnJ m 2287413.05 264798.6869 2825548.7275 1749277.3725
BALB/cJ m 2092464.1333 216207.2225 2531850.0741 1653078.1926
BXA16/PgnJ m 1844410.05 264798.6869 2382545.7275 1306274.3725
BXD19/TyJ m 2476749.75 264798.6869 3014885.4275 1938614.0725
BXD28/TyJ m 1728587.9 264798.6869 2266723.5775 1190452.2225
BXH4/TyJ m 1996146.25 264798.6869 2534281.9275 1458010.5725
C3H/HeJ m 3385275.8 264798.6869 3923411.4775 2847140.1225
C57BL/6J m 1711292.36 167473.3944 2051639.2462 1370945.4738
CXB11/HiAJ m 1610319.25 264798.6869 2148454.9275 1072183.5725
CXB12/HiAJ m 2027840.05 264798.6869 2565975.7275 1489704.3725
CXB13/HiAJ m 2567597.7667 216207.2225 3006983.7074 2128211.8259
CXB1/ByJ m 2563160.9667 216207.2225 3002546.9074 2123775.0259
CXB2/ByJ m 1596905.7 216207.2225 2036291.6408 1157519.7592
CXB3/ByJ m 2415512.65 264798.6869 2953648.3275 1877376.9725
CXB4/ByJ m 2152895.75 264798.6869 2691031.4275 1614760.0725
CXB6/ByJ m 1660703.6333 216207.2225 2100089.5741 1221317.6926
CXB7/ByJ m 1782458.75 264798.6869 2320594.4275 1244323.0725
CXB8/HiAJ m 1928275.0667 216207.2225 2367661.0074 1488889.1259
CXB9/HiAJ m 1462763.4333 216207.2225 1902149.3741 1023377.4926
DBA/2J m 2790319.2 187240.9471 3170838.5868 2409799.8132




  GWAS USING LINEAR MIXED MODELS