Project measure / variable:   HMDPpheno8   glycerol

ID, description, units MPD:50342   glycerol   glycerol (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - glycerol (16h fast), relative abundance

CXB9/HiAJCXB12/HiAJCXB6/ByJCXB2/ByJBXD32/TyJBXA26/PgnJCXB8/HiAJC57BL/6JAXB13/PgnJCXB11/HiAJCXB4/ByJBXA7/PgnJCXB3/ByJCXB7/ByJAXB15/PgnJBXA1/PgnJBXD39/TyJBXD28/TyJCXB13/HiAJBXA2/PgnJKK/HlJCXB1/ByJBXA24/PgnJAXB23/PgnJBXD18/TyJAXB6/PgnJAXB24/PgnJBXD21/TyJBXD13/TyJBUB/BnJBXA8/PgnJBXD1/TyJAXB2/PgnJRIIIS/JBTBR T<+> Itpr3<tf>/JAXB5/PgnJBXD40/TyJBXA16/PgnJBXA25/PgnJBXD8/TyJNOD/ShiLtJBXH22/KccJNZW/LacJBXD12/TyJBXD24/TyJSWR/JC57L/JBXA12/PgnJAXB8/PgnJBXD19/TyJA/JAXB10/PgnJBXD15/TyJBXA11/PgnJBALB/cJBXD29-Tlr4<lps-2J>/JBXH9/TyJBXD34/TyJBXH8/TyJCBA/JMA/MyJPL/JBXD11/TyJBXD5/TyJBXD38/TyJBXH19/TyJBXH20/KccJBXH4/TyJBXD6/TyJBXD36/TyJAKR/JBXH2/TyJCE/JNON/ShiLtJAXB19a/PgnJBXD14/TyJSM/JBXD2/TyJDBA/2JAXB1/PgnJC3H/HeJAXB12/PgnJBXD9/TyJSEA/GnJAXB19/PgnJ129X1/SvJBXD20/TyJBXH6/TyJBXD22/TyJBXA4/PgnJBXH7/TyJBXD24/TyJ-Cep290<rd16>/JBXA13/PgnJAXB4/PgnJBXD42/TyJBXH10/TyJBXD33/TyJLP/JFVB/NJAXB19b/PgnJI/LnJSJL/JLG/JBXA14/PgnJCAST/EiJC58/J (no units) 20,000,00040,000,00060,000,00080,000,000100,000,000120,000,000140,000,000160,000,000180,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means31238161   None
Median of the strain means30273242   None
SD of the strain means± 11114906
Coefficient of variation (CV)0.356
Min–max range of strain means11086583   –   97610685   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1.62972747678604e+16 776060703231447.0 1.7912 0.0635
Residuals 34 1.47309139839446e+16 433262175998370.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 24021418.0 0.0   1   0.0 0.0 24021418.0, 24021418.0 -0.65
A/J m 30381385.0 5579586.0   2   3945363.0 0.184 26436022.0, 34326748.0 -0.08
AKR/J m 27116464.0 0.0   1   0.0 0.0 27116464.0, 27116464.0 -0.37
AXB10/PgnJ m 30275422.0 0.0   1   0.0 0.0 30275422.0, 30275422.0 -0.09
AXB12/PgnJ m 24535076.0 0.0   1   0.0 0.0 24535076.0, 24535076.0 -0.6
AXB13/PgnJ m 43943744.0 0.0   1   0.0 0.0 43943744.0, 43943744.0 1.14
AXB15/PgnJ m 40814636.0 0.0   1   0.0 0.0 40814636.0, 40814636.0 0.86
AXB19a/PgnJ m 25860874.0 0.0   1   0.0 0.0 25860874.0, 25860874.0 -0.48
AXB19b/PgnJ m 17772239.0 1278108.0   2   903759.0 0.0719 16868480.0, 18675998.0 -1.21
AXB19/PgnJ m 24043498.0 0.0   1   0.0 0.0 24043498.0, 24043498.0 -0.65
AXB1/PgnJ m 24903124.0 0.0   1   0.0 0.0 24903124.0, 24903124.0 -0.57
AXB23/PgnJ m 35189132.0 0.0   1   0.0 0.0 35189132.0, 35189132.0 0.36
AXB24/PgnJ m 34671469.0 3616646.0   2   2557355.0 0.104 32114114.0, 37228824.0 0.31
AXB2/PgnJ m 32653714.0 0.0   1   0.0 0.0 32653714.0, 32653714.0 0.13
AXB4/PgnJ m 21095236.0 0.0   1   0.0 0.0 21095236.0, 21095236.0 -0.91
AXB5/PgnJ m 32381380.0 0.0   1   0.0 0.0 32381380.0, 32381380.0 0.1
AXB6/PgnJ m 34823984.0 0.0   1   0.0 0.0 34823984.0, 34823984.0 0.32
AXB8/PgnJ m 30652946.0 0.0   1   0.0 0.0 30652946.0, 30652946.0 -0.05
BALB/cJ m 30138335.0 2002379.0   3 1156074.0 0.0664 28032050.0, 32017428.0 -0.1
BTBR T+ Itpr3tf/J m 32439650.0 0.0   1   0.0 0.0 32439650.0, 32439650.0 0.11
BUB/BnJ m 34427064.0 0.0   1   0.0 0.0 34427064.0, 34427064.0 0.29
BXA11/PgnJ m 30272772.0 0.0   1   0.0 0.0 30272772.0, 30272772.0 -0.09
BXA12/PgnJ m 30658230.0 0.0   1   0.0 0.0 30658230.0, 30658230.0 -0.05
BXA13/PgnJ m 21742614.0 0.0   1   0.0 0.0 21742614.0, 21742614.0 -0.85
BXA14/PgnJ m 13050871.0 0.0   1   0.0 0.0 13050871.0, 13050871.0 -1.64
BXA16/PgnJ m 32211046.0 6477718.0   2   4580438.0 0.201 27630608.0, 36791484.0 0.09
BXA1/PgnJ m 40807352.0 0.0   1   0.0 0.0 40807352.0, 40807352.0 0.86
BXA24/PgnJ m 35210616.0 0.0   1   0.0 0.0 35210616.0, 35210616.0 0.36
BXA25/PgnJ m 32111006.0 0.0   1   0.0 0.0 32111006.0, 32111006.0 0.08
BXA26/PgnJ m 45999396.0 0.0   1   0.0 0.0 45999396.0, 45999396.0 1.33
BXA2/PgnJ m 37777848.0 0.0   1   0.0 0.0 37777848.0, 37777848.0 0.59
BXA4/PgnJ m 22654980.0 0.0   1   0.0 0.0 22654980.0, 22654980.0 -0.77
BXA7/PgnJ m 43325556.0 0.0   1   0.0 0.0 43325556.0, 43325556.0 1.09
BXA8/PgnJ m 33913192.0 0.0   1   0.0 0.0 33913192.0, 33913192.0 0.24
BXD11/TyJ m 28475294.0 0.0   1   0.0 0.0 28475294.0, 28475294.0 -0.25
BXD12/TyJ m 31604134.0 0.0   1   0.0 0.0 31604134.0, 31604134.0 0.03
BXD13/TyJ m 34523876.0 0.0   1   0.0 0.0 34523876.0, 34523876.0 0.3
BXD14/TyJ m 25757380.0 0.0   1   0.0 0.0 25757380.0, 25757380.0 -0.49
BXD15/TyJ m 30273712.0 0.0   1   0.0 0.0 30273712.0, 30273712.0 -0.09
BXD18/TyJ m 35167400.0 0.0   1   0.0 0.0 35167400.0, 35167400.0 0.35
BXD19/TyJ m 30563218.0 1749249.0   2   1236906.0 0.0572 29326312.0, 31800124.0 -0.06
BXD1/TyJ m 33709400.0 0.0   1   0.0 0.0 33709400.0, 33709400.0 0.22
BXD20/TyJ m 23084200.0 0.0   1   0.0 0.0 23084200.0, 23084200.0 -0.73
BXD21/TyJ m 34531376.0 0.0   1   0.0 0.0 34531376.0, 34531376.0 0.3
BXD22/TyJ m 22785048.0 0.0   1   0.0 0.0 22785048.0, 22785048.0 -0.76
BXD24/TyJ m 31377902.0 0.0   1   0.0 0.0 31377902.0, 31377902.0 0.01
BXD24/TyJ-Cep290rd16/J m 22247148.0 0.0   1   0.0 0.0 22247148.0, 22247148.0 -0.81
BXD28/TyJ m 40238888.0 1172496.0   2   829080.0 0.0291 39409808.0, 41067968.0 0.81
BXD29-Tlr4lps-2J/J m 30038608.0 0.0   1   0.0 0.0 30038608.0, 30038608.0 -0.11
BXD2/TyJ m 25459690.0 0.0   1   0.0 0.0 25459690.0, 25459690.0 -0.52
BXD32/TyJ m 46026996.0 0.0   1   0.0 0.0 46026996.0, 46026996.0 1.33
BXD33/TyJ m 19670792.0 0.0   1   0.0 0.0 19670792.0, 19670792.0 -1.04
BXD34/TyJ m 29796796.0 0.0   1   0.0 0.0 29796796.0, 29796796.0 -0.13
BXD36/TyJ m 27237784.0 0.0   1   0.0 0.0 27237784.0, 27237784.0 -0.36
BXD38/TyJ m 28210280.0 0.0   1   0.0 0.0 28210280.0, 28210280.0 -0.27
BXD39/TyJ m 40612312.0 0.0   1   0.0 0.0 40612312.0, 40612312.0 0.84
BXD40/TyJ m 32366276.0 0.0   1   0.0 0.0 32366276.0, 32366276.0 0.1
BXD42/TyJ m 20726546.0 0.0   1   0.0 0.0 20726546.0, 20726546.0 -0.95
BXD5/TyJ m 28458470.0 0.0   1   0.0 0.0 28458470.0, 28458470.0 -0.25
BXD6/TyJ m 27679378.0 0.0   1   0.0 0.0 27679378.0, 27679378.0 -0.32
BXD8/TyJ m 32079994.0 0.0   1   0.0 0.0 32079994.0, 32079994.0 0.08
BXD9/TyJ m 24332962.0 0.0   1   0.0 0.0 24332962.0, 24332962.0 -0.62
BXH10/TyJ m 20367046.0 0.0   1   0.0 0.0 20367046.0, 20367046.0 -0.98
BXH19/TyJ m 28125586.0 0.0   1   0.0 0.0 28125586.0, 28125586.0 -0.28
BXH20/KccJ m 28115488.0 0.0   1   0.0 0.0 28115488.0, 28115488.0 -0.28
BXH22/KccJ m 31800362.0 0.0   1   0.0 0.0 31800362.0, 31800362.0 0.05
BXH2/TyJ m 26761756.0 0.0   1   0.0 0.0 26761756.0, 26761756.0 -0.4
BXH4/TyJ m 27951220.0 1918474.0   2   1356566.0 0.0686 26594654.0, 29307786.0 -0.3
BXH6/TyJ m 22916978.0 0.0   1   0.0 0.0 22916978.0, 22916978.0 -0.75
BXH7/TyJ m 22331730.0 0.0   1   0.0 0.0 22331730.0, 22331730.0 -0.8
BXH8/TyJ m 29776272.0 0.0   1   0.0 0.0 29776272.0, 29776272.0 -0.13
BXH9/TyJ m 29935574.0 0.0   1   0.0 0.0 29935574.0, 29935574.0 -0.12
C3H/HeJ m 24835343.0 6481888.0   2   4583387.0 0.261 20251956.0, 29418730.0 -0.58
C57BL/6J m 44861575.0 9488734.0   5 4243491.0 0.212 31141090.0, 56050600.0 1.23
C57L/J m 30758284.0 0.0   1   0.0 0.0 30758284.0, 30758284.0 -0.04
C58/J m 11086583.0 0.0   1   0.0 0.0 11086583.0, 11086583.0 -1.81
CAST/EiJ m 12876748.0 0.0   1   0.0 0.0 12876748.0, 12876748.0 -1.65
CBA/J m 28924106.0 0.0   1   0.0 0.0 28924106.0, 28924106.0 -0.21
CE/J m 26712042.0 0.0   1   0.0 0.0 26712042.0, 26712042.0 -0.41
CXB11/HiAJ m 43732579.0 16412499.0   2   11605389.0 0.375 32127190.0, 55337968.0 1.12
CXB12/HiAJ m 63230822.0 21049746.0   2   14884418.0 0.333 48346404.0, 78115240.0 2.88
CXB13/HiAJ m 39585420.0 13726164.0   3 7924804.0 0.347 23841524.0, 49040048.0 0.75
CXB1/ByJ m 36370257.0 11240171.0   3 6489516.0 0.309 23394338.0, 43104392.0 0.46
CXB2/ByJ m 56901661.0 27194658.0   3 15700843.0 0.478 35287420.0, 87436120.0 2.31
CXB3/ByJ m 41314710.0 824240.0   2   582826.0 0.02 40731884.0, 41897536.0 0.91
CXB4/ByJ m 43568962.0 4104373.0   2   2902230.0 0.0942 40666732.0, 46471192.0 1.11
CXB6/ByJ m 57678687.0 30338207.0   3 17515772.0 0.526 38649120.0, 92665288.0 2.38
CXB7/ByJ m 40853108.0 2371817.0   2   1677128.0 0.0581 39175980.0, 42530236.0 0.87
CXB8/HiAJ m 44932093.0 15096285.0   3 8715844.0 0.336 27507640.0, 54079224.0 1.23
CXB9/HiAJ m 97610685.0 67220074.0   3 38809528.0 0.689 50735992.0, 174626112.0 5.97
DBA/2J m 25383300.0 3954694.0   4 1977347.0 0.156 19528616.0, 28148106.0 -0.53
FVB/NJ m 17989932.0 0.0   1   0.0 0.0 17989932.0, 17989932.0 -1.19
I/LnJ m 17265200.0 0.0   1   0.0 0.0 17265200.0, 17265200.0 -1.26
KK/HlJ m 36560160.0 0.0   1   0.0 0.0 36560160.0, 36560160.0 0.48
LG/J m 15214461.0 0.0   1   0.0 0.0 15214461.0, 15214461.0 -1.44
LP/J m 19042786.0 0.0   1   0.0 0.0 19042786.0, 19042786.0 -1.1
MA/MyJ m 28590352.0 0.0   1   0.0 0.0 28590352.0, 28590352.0 -0.24
NOD/ShiLtJ m 31870322.0 0.0   1   0.0 0.0 31870322.0, 31870322.0 0.06
NON/ShiLtJ m 26536294.0 0.0   1   0.0 0.0 26536294.0, 26536294.0 -0.42
NZW/LacJ m 31619714.0 0.0   1   0.0 0.0 31619714.0, 31619714.0 0.03
PL/J m 28504986.0 0.0   1   0.0 0.0 28504986.0, 28504986.0 -0.25
RIIIS/J m 32454582.0 0.0   1   0.0 0.0 32454582.0, 32454582.0 0.11
SEA/GnJ m 24298776.0 0.0   1   0.0 0.0 24298776.0, 24298776.0 -0.62
SJL/J m 16747888.0 0.0   1   0.0 0.0 16747888.0, 16747888.0 -1.3
SM/J m 25574946.0 0.0   1   0.0 0.0 25574946.0, 25574946.0 -0.51
SWR/J m 30763566.0 0.0   1   0.0 0.0 30763566.0, 30763566.0 -0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 30381385.0 14718392.847 60292758.0493 470011.9507
AXB19b/PgnJ m 17772239.0 14718392.847 47683612.0493 0.0
AXB24/PgnJ m 34671469.0 14718392.847 64582842.0493 4760095.9507
BALB/cJ m 30138334.6667 12017517.4363 54560868.4923 5715800.841
BXA16/PgnJ m 32211046.0 14718392.847 62122419.0493 2299672.9507
BXD19/TyJ m 30563218.0 14718392.847 60474591.0493 651844.9507
BXD28/TyJ m 40238888.0 14718392.847 70150261.0493 10327514.9507
BXH4/TyJ m 27951220.0 14718392.847 57862593.0493 0.0
C3H/HeJ m 24835343.0 14718392.847 54746716.0493 0.0
C57BL/6J m 44861574.8 9308728.9787 63779188.1558 25943961.4442
CXB11/HiAJ m 43732579.0 14718392.847 73643952.0493 13821205.9507
CXB12/HiAJ m 63230822.0 14718392.847 93142195.0493 33319448.9507
CXB13/HiAJ m 39585420.0 12017517.4363 64007953.8256 15162886.1744
CXB1/ByJ m 36370256.6667 12017517.4363 60792790.4923 11947722.841
CXB2/ByJ m 56901661.3333 12017517.4363 81324195.159 32479127.5077
CXB3/ByJ m 41314710.0 14718392.847 71226083.0493 11403336.9507
CXB4/ByJ m 43568962.0 14718392.847 73480335.0493 13657588.9507
CXB6/ByJ m 57678686.6667 12017517.4363 82101220.4923 33256152.841
CXB7/ByJ m 40853108.0 14718392.847 70764481.0493 10941734.9507
CXB8/HiAJ m 44932093.3333 12017517.4363 69354627.159 20509559.5077
CXB9/HiAJ m 97610685.3333 12017517.4363 122033219.159 73188151.5077
DBA/2J m 25383300.5 10407475.3903 46533835.2178 4232765.7822




  GWAS USING LINEAR MIXED MODELS

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