Phenotype measure:   HMDPpheno8   glycerol

ID, description, units MPD:50342   glycerol   glycerol (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno8 - glycerol (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means31238161   None
Median of the strain means30273242   None
SD of the strain means± 11114906
Coefficient of variation (CV)0.356
Min–max range of strain means11086583   –   97610685   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1.62972747678604e+16 776060703231447.0 1.7912 0.0635
Residuals 34 1.47309139839446e+16 433262175998370.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 24021418.0 0.0   1   0.0 0.0 24021418.0, 24021418.0 -0.65
A/J m 30381385.0 5579586.0   2   3945363.0 0.184 26436022.0, 34326748.0 -0.08
AKR/J m 27116464.0 0.0   1   0.0 0.0 27116464.0, 27116464.0 -0.37
AXB10/PgnJ m 30275422.0 0.0   1   0.0 0.0 30275422.0, 30275422.0 -0.09
AXB12/PgnJ m 24535076.0 0.0   1   0.0 0.0 24535076.0, 24535076.0 -0.6
AXB13/PgnJ m 43943744.0 0.0   1   0.0 0.0 43943744.0, 43943744.0 1.14
AXB15/PgnJ m 40814636.0 0.0   1   0.0 0.0 40814636.0, 40814636.0 0.86
AXB19a/PgnJ m 25860874.0 0.0   1   0.0 0.0 25860874.0, 25860874.0 -0.48
AXB19b/PgnJ m 17772239.0 1278108.0   2   903759.0 0.0719 16868480.0, 18675998.0 -1.21
AXB19/PgnJ m 24043498.0 0.0   1   0.0 0.0 24043498.0, 24043498.0 -0.65
AXB1/PgnJ m 24903124.0 0.0   1   0.0 0.0 24903124.0, 24903124.0 -0.57
AXB23/PgnJ m 35189132.0 0.0   1   0.0 0.0 35189132.0, 35189132.0 0.36
AXB24/PgnJ m 34671469.0 3616646.0   2   2557355.0 0.104 32114114.0, 37228824.0 0.31
AXB2/PgnJ m 32653714.0 0.0   1   0.0 0.0 32653714.0, 32653714.0 0.13
AXB4/PgnJ m 21095236.0 0.0   1   0.0 0.0 21095236.0, 21095236.0 -0.91
AXB5/PgnJ m 32381380.0 0.0   1   0.0 0.0 32381380.0, 32381380.0 0.1
AXB6/PgnJ m 34823984.0 0.0   1   0.0 0.0 34823984.0, 34823984.0 0.32
AXB8/PgnJ m 30652946.0 0.0   1   0.0 0.0 30652946.0, 30652946.0 -0.05
BALB/cJ m 30138335.0 2002379.0   3 1156074.0 0.0664 28032050.0, 32017428.0 -0.1
BTBR T+ Itpr3tf/J m 32439650.0 0.0   1   0.0 0.0 32439650.0, 32439650.0 0.11
BUB/BnJ m 34427064.0 0.0   1   0.0 0.0 34427064.0, 34427064.0 0.29
BXA11/PgnJ m 30272772.0 0.0   1   0.0 0.0 30272772.0, 30272772.0 -0.09
BXA12/PgnJ m 30658230.0 0.0   1   0.0 0.0 30658230.0, 30658230.0 -0.05
BXA13/PgnJ m 21742614.0 0.0   1   0.0 0.0 21742614.0, 21742614.0 -0.85
BXA14/PgnJ m 13050871.0 0.0   1   0.0 0.0 13050871.0, 13050871.0 -1.64
BXA16/PgnJ m 32211046.0 6477718.0   2   4580438.0 0.201 27630608.0, 36791484.0 0.09
BXA1/PgnJ m 40807352.0 0.0   1   0.0 0.0 40807352.0, 40807352.0 0.86
BXA24/PgnJ m 35210616.0 0.0   1   0.0 0.0 35210616.0, 35210616.0 0.36
BXA25/PgnJ m 32111006.0 0.0   1   0.0 0.0 32111006.0, 32111006.0 0.08
BXA26/PgnJ m 45999396.0 0.0   1   0.0 0.0 45999396.0, 45999396.0 1.33
BXA2/PgnJ m 37777848.0 0.0   1   0.0 0.0 37777848.0, 37777848.0 0.59
BXA4/PgnJ m 22654980.0 0.0   1   0.0 0.0 22654980.0, 22654980.0 -0.77
BXA7/PgnJ m 43325556.0 0.0   1   0.0 0.0 43325556.0, 43325556.0 1.09
BXA8/PgnJ m 33913192.0 0.0   1   0.0 0.0 33913192.0, 33913192.0 0.24
BXD11/TyJ m 28475294.0 0.0   1   0.0 0.0 28475294.0, 28475294.0 -0.25
BXD12/TyJ m 31604134.0 0.0   1   0.0 0.0 31604134.0, 31604134.0 0.03
BXD13/TyJ m 34523876.0 0.0   1   0.0 0.0 34523876.0, 34523876.0 0.3
BXD14/TyJ m 25757380.0 0.0   1   0.0 0.0 25757380.0, 25757380.0 -0.49
BXD15/TyJ m 30273712.0 0.0   1   0.0 0.0 30273712.0, 30273712.0 -0.09
BXD18/TyJ m 35167400.0 0.0   1   0.0 0.0 35167400.0, 35167400.0 0.35
BXD19/TyJ m 30563218.0 1749249.0   2   1236906.0 0.0572 29326312.0, 31800124.0 -0.06
BXD1/TyJ m 33709400.0 0.0   1   0.0 0.0 33709400.0, 33709400.0 0.22
BXD20/TyJ m 23084200.0 0.0   1   0.0 0.0 23084200.0, 23084200.0 -0.73
BXD21/TyJ m 34531376.0 0.0   1   0.0 0.0 34531376.0, 34531376.0 0.3
BXD22/TyJ m 22785048.0 0.0   1   0.0 0.0 22785048.0, 22785048.0 -0.76
BXD24/TyJ m 31377902.0 0.0   1   0.0 0.0 31377902.0, 31377902.0 0.01
BXD24/TyJ-Cep290rd16/J m 22247148.0 0.0   1   0.0 0.0 22247148.0, 22247148.0 -0.81
BXD28/TyJ m 40238888.0 1172496.0   2   829080.0 0.0291 39409808.0, 41067968.0 0.81
BXD29-Tlr4lps-2J/J m 30038608.0 0.0   1   0.0 0.0 30038608.0, 30038608.0 -0.11
BXD2/TyJ m 25459690.0 0.0   1   0.0 0.0 25459690.0, 25459690.0 -0.52
BXD32/TyJ m 46026996.0 0.0   1   0.0 0.0 46026996.0, 46026996.0 1.33
BXD33/TyJ m 19670792.0 0.0   1   0.0 0.0 19670792.0, 19670792.0 -1.04
BXD34/TyJ m 29796796.0 0.0   1   0.0 0.0 29796796.0, 29796796.0 -0.13
BXD36/TyJ m 27237784.0 0.0   1   0.0 0.0 27237784.0, 27237784.0 -0.36
BXD38/TyJ m 28210280.0 0.0   1   0.0 0.0 28210280.0, 28210280.0 -0.27
BXD39/TyJ m 40612312.0 0.0   1   0.0 0.0 40612312.0, 40612312.0 0.84
BXD40/TyJ m 32366276.0 0.0   1   0.0 0.0 32366276.0, 32366276.0 0.1
BXD42/TyJ m 20726546.0 0.0   1   0.0 0.0 20726546.0, 20726546.0 -0.95
BXD5/TyJ m 28458470.0 0.0   1   0.0 0.0 28458470.0, 28458470.0 -0.25
BXD6/TyJ m 27679378.0 0.0   1   0.0 0.0 27679378.0, 27679378.0 -0.32
BXD8/TyJ m 32079994.0 0.0   1   0.0 0.0 32079994.0, 32079994.0 0.08
BXD9/TyJ m 24332962.0 0.0   1   0.0 0.0 24332962.0, 24332962.0 -0.62
BXH10/TyJ m 20367046.0 0.0   1   0.0 0.0 20367046.0, 20367046.0 -0.98
BXH19/TyJ m 28125586.0 0.0   1   0.0 0.0 28125586.0, 28125586.0 -0.28
BXH20/KccJ m 28115488.0 0.0   1   0.0 0.0 28115488.0, 28115488.0 -0.28
BXH22/KccJ m 31800362.0 0.0   1   0.0 0.0 31800362.0, 31800362.0 0.05
BXH2/TyJ m 26761756.0 0.0   1   0.0 0.0 26761756.0, 26761756.0 -0.4
BXH4/TyJ m 27951220.0 1918474.0   2   1356566.0 0.0686 26594654.0, 29307786.0 -0.3
BXH6/TyJ m 22916978.0 0.0   1   0.0 0.0 22916978.0, 22916978.0 -0.75
BXH7/TyJ m 22331730.0 0.0   1   0.0 0.0 22331730.0, 22331730.0 -0.8
BXH8/TyJ m 29776272.0 0.0   1   0.0 0.0 29776272.0, 29776272.0 -0.13
BXH9/TyJ m 29935574.0 0.0   1   0.0 0.0 29935574.0, 29935574.0 -0.12
C3H/HeJ m 24835343.0 6481888.0   2   4583387.0 0.261 20251956.0, 29418730.0 -0.58
C57BL/6J m 44861575.0 9488734.0   5 4243491.0 0.212 31141090.0, 56050600.0 1.23
C57L/J m 30758284.0 0.0   1   0.0 0.0 30758284.0, 30758284.0 -0.04
C58/J m 11086583.0 0.0   1   0.0 0.0 11086583.0, 11086583.0 -1.81
CAST/EiJ m 12876748.0 0.0   1   0.0 0.0 12876748.0, 12876748.0 -1.65
CBA/J m 28924106.0 0.0   1   0.0 0.0 28924106.0, 28924106.0 -0.21
CE/J m 26712042.0 0.0   1   0.0 0.0 26712042.0, 26712042.0 -0.41
CXB11/HiAJ m 43732579.0 16412499.0   2   11605389.0 0.375 32127190.0, 55337968.0 1.12
CXB12/HiAJ m 63230822.0 21049746.0   2   14884418.0 0.333 48346404.0, 78115240.0 2.88
CXB13/HiAJ m 39585420.0 13726164.0   3 7924804.0 0.347 23841524.0, 49040048.0 0.75
CXB1/ByJ m 36370257.0 11240171.0   3 6489516.0 0.309 23394338.0, 43104392.0 0.46
CXB2/ByJ m 56901661.0 27194658.0   3 15700843.0 0.478 35287420.0, 87436120.0 2.31
CXB3/ByJ m 41314710.0 824240.0   2   582826.0 0.02 40731884.0, 41897536.0 0.91
CXB4/ByJ m 43568962.0 4104373.0   2   2902230.0 0.0942 40666732.0, 46471192.0 1.11
CXB6/ByJ m 57678687.0 30338207.0   3 17515772.0 0.526 38649120.0, 92665288.0 2.38
CXB7/ByJ m 40853108.0 2371817.0   2   1677128.0 0.0581 39175980.0, 42530236.0 0.87
CXB8/HiAJ m 44932093.0 15096285.0   3 8715844.0 0.336 27507640.0, 54079224.0 1.23
CXB9/HiAJ m 97610685.0 67220074.0   3 38809528.0 0.689 50735992.0, 174626112.0 5.97
DBA/2J m 25383300.0 3954694.0   4 1977347.0 0.156 19528616.0, 28148106.0 -0.53
FVB/NJ m 17989932.0 0.0   1   0.0 0.0 17989932.0, 17989932.0 -1.19
I/LnJ m 17265200.0 0.0   1   0.0 0.0 17265200.0, 17265200.0 -1.26
KK/HlJ m 36560160.0 0.0   1   0.0 0.0 36560160.0, 36560160.0 0.48
LG/J m 15214461.0 0.0   1   0.0 0.0 15214461.0, 15214461.0 -1.44
LP/J m 19042786.0 0.0   1   0.0 0.0 19042786.0, 19042786.0 -1.1
MA/MyJ m 28590352.0 0.0   1   0.0 0.0 28590352.0, 28590352.0 -0.24
NOD/ShiLtJ m 31870322.0 0.0   1   0.0 0.0 31870322.0, 31870322.0 0.06
NON/ShiLtJ m 26536294.0 0.0   1   0.0 0.0 26536294.0, 26536294.0 -0.42
NZW/LacJ m 31619714.0 0.0   1   0.0 0.0 31619714.0, 31619714.0 0.03
PL/J m 28504986.0 0.0   1   0.0 0.0 28504986.0, 28504986.0 -0.25
RIIIS/J m 32454582.0 0.0   1   0.0 0.0 32454582.0, 32454582.0 0.11
SEA/GnJ m 24298776.0 0.0   1   0.0 0.0 24298776.0, 24298776.0 -0.62
SJL/J m 16747888.0 0.0   1   0.0 0.0 16747888.0, 16747888.0 -1.3
SM/J m 25574946.0 0.0   1   0.0 0.0 25574946.0, 25574946.0 -0.51
SWR/J m 30763566.0 0.0   1   0.0 0.0 30763566.0, 30763566.0 -0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 30381385.0 14718392.847 60292758.0493 470011.9507
AXB19b/PgnJ m 17772239.0 14718392.847 47683612.0493 0.0
AXB24/PgnJ m 34671469.0 14718392.847 64582842.0493 4760095.9507
BALB/cJ m 30138334.6667 12017517.4363 54560868.4923 5715800.841
BXA16/PgnJ m 32211046.0 14718392.847 62122419.0493 2299672.9507
BXD19/TyJ m 30563218.0 14718392.847 60474591.0493 651844.9507
BXD28/TyJ m 40238888.0 14718392.847 70150261.0493 10327514.9507
BXH4/TyJ m 27951220.0 14718392.847 57862593.0493 0.0
C3H/HeJ m 24835343.0 14718392.847 54746716.0493 0.0
C57BL/6J m 44861574.8 9308728.9787 63779188.1558 25943961.4442
CXB11/HiAJ m 43732579.0 14718392.847 73643952.0493 13821205.9507
CXB12/HiAJ m 63230822.0 14718392.847 93142195.0493 33319448.9507
CXB13/HiAJ m 39585420.0 12017517.4363 64007953.8256 15162886.1744
CXB1/ByJ m 36370256.6667 12017517.4363 60792790.4923 11947722.841
CXB2/ByJ m 56901661.3333 12017517.4363 81324195.159 32479127.5077
CXB3/ByJ m 41314710.0 14718392.847 71226083.0493 11403336.9507
CXB4/ByJ m 43568962.0 14718392.847 73480335.0493 13657588.9507
CXB6/ByJ m 57678686.6667 12017517.4363 82101220.4923 33256152.841
CXB7/ByJ m 40853108.0 14718392.847 70764481.0493 10941734.9507
CXB8/HiAJ m 44932093.3333 12017517.4363 69354627.159 20509559.5077
CXB9/HiAJ m 97610685.3333 12017517.4363 122033219.159 73188151.5077
DBA/2J m 25383300.5 10407475.3903 46533835.2178 4232765.7822




  GWAS USING LINEAR MIXED MODELS