Project measure / variable:   HMDPpheno8   G3P

ID, description, units MPD:50341   G3P   glycerol 3-phosphate (G3P) (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - glycerol 3-phosphate (G3P) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1974033   None
Median of the strain means1435116   None
SD of the strain means± 1525999
Coefficient of variation (CV)0.773
Min–max range of strain means318562   –   6276129   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 120380849379427.0 5732421399020.32 3.0076 0.0021
Residuals 34 64803092673001.0 1905973313911.8


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 4386400.0 0.0   1   0.0 0.0 4386400.0, 4386400.0 1.58
A/J m 831408.0 313204.0   2   221469.0 0.377 609940.0, 1052877.0 -0.75
AKR/J m 3427841.0 0.0   1   0.0 0.0 3427841.0, 3427841.0 0.95
AXB10/PgnJ m 3322806.0 0.0   1   0.0 0.0 3322806.0, 3322806.0 0.88
AXB12/PgnJ m 789898.0 0.0   1   0.0 0.0 789898.0, 789898.0 -0.78
AXB13/PgnJ m 3838830.0 0.0   1   0.0 0.0 3838830.0, 3838830.0 1.22
AXB15/PgnJ m 891724.0 0.0   1   0.0 0.0 891724.0, 891724.0 -0.71
AXB19a/PgnJ m 318562.0 0.0   1   0.0 0.0 318562.0, 318562.0 -1.08
AXB19b/PgnJ m 405103.0 103192.0   2   72967.0 0.255 332136.0, 478071.0 -1.03
AXB19/PgnJ m 644414.0 0.0   1   0.0 0.0 644414.0, 644414.0 -0.87
AXB1/PgnJ m 664146.0 0.0   1   0.0 0.0 664146.0, 664146.0 -0.86
AXB23/PgnJ m 1547887.0 0.0   1   0.0 0.0 1547887.0, 1547887.0 -0.28
AXB24/PgnJ m 3474104.0 805833.0   2   569810.0 0.232 2904293.0, 4043914.0 0.98
AXB2/PgnJ m 537725.0 0.0   1   0.0 0.0 537725.0, 537725.0 -0.94
AXB4/PgnJ m 353196.0 0.0   1   0.0 0.0 353196.0, 353196.0 -1.06
AXB5/PgnJ m 2397808.0 0.0   1   0.0 0.0 2397808.0, 2397808.0 0.28
AXB6/PgnJ m 1104714.0 0.0   1   0.0 0.0 1104714.0, 1104714.0 -0.57
AXB8/PgnJ m 1462080.0 0.0   1   0.0 0.0 1462080.0, 1462080.0 -0.34
BALB/cJ m 2061620.0 1063713.0   3 614135.0 0.516 1317508.0, 3279967.0 0.06
BTBR T+ Itpr3tf/J m 1814595.0 0.0   1   0.0 0.0 1814595.0, 1814595.0 -0.1
BUB/BnJ m 2237289.0 0.0   1   0.0 0.0 2237289.0, 2237289.0 0.17
BXA11/PgnJ m 1469588.0 0.0   1   0.0 0.0 1469588.0, 1469588.0 -0.33
BXA12/PgnJ m 2948258.0 0.0   1   0.0 0.0 2948258.0, 2948258.0 0.64
BXA13/PgnJ m 480355.0 0.0   1   0.0 0.0 480355.0, 480355.0 -0.98
BXA14/PgnJ m 732822.0 0.0   1   0.0 0.0 732822.0, 732822.0 -0.81
BXA16/PgnJ m 3691873.0 690881.0   2   488527.0 0.187 3203346.0, 4180400.0 1.13
BXA1/PgnJ m 2200982.0 0.0   1   0.0 0.0 2200982.0, 2200982.0 0.15
BXA24/PgnJ m 2720842.0 0.0   1   0.0 0.0 2720842.0, 2720842.0 0.49
BXA25/PgnJ m 1172760.0 0.0   1   0.0 0.0 1172760.0, 1172760.0 -0.53
BXA26/PgnJ m 2002953.0 0.0   1   0.0 0.0 2002953.0, 2002953.0 0.02
BXA2/PgnJ m 4081125.0 0.0   1   0.0 0.0 4081125.0, 4081125.0 1.38
BXA4/PgnJ m 2315879.0 0.0   1   0.0 0.0 2315879.0, 2315879.0 0.22
BXA7/PgnJ m 5243888.0 0.0   1   0.0 0.0 5243888.0, 5243888.0 2.14
BXA8/PgnJ m 4228124.0 0.0   1   0.0 0.0 4228124.0, 4228124.0 1.48
BXD11/TyJ m 1619938.0 0.0   1   0.0 0.0 1619938.0, 1619938.0 -0.23
BXD12/TyJ m 1340288.0 0.0   1   0.0 0.0 1340288.0, 1340288.0 -0.42
BXD13/TyJ m 1400645.0 0.0   1   0.0 0.0 1400645.0, 1400645.0 -0.38
BXD14/TyJ m 456468.0 0.0   1   0.0 0.0 456468.0, 456468.0 -0.99
BXD15/TyJ m 2074978.0 0.0   1   0.0 0.0 2074978.0, 2074978.0 0.07
BXD18/TyJ m 5502104.0 0.0   1   0.0 0.0 5502104.0, 5502104.0 2.31
BXD19/TyJ m 1573335.0 1748135.0   2   1236118.0 1.11 337217.0, 2809454.0 -0.26
BXD1/TyJ m 533081.0 0.0   1   0.0 0.0 533081.0, 533081.0 -0.94
BXD20/TyJ m 792100.0 0.0   1   0.0 0.0 792100.0, 792100.0 -0.77
BXD21/TyJ m 677862.0 0.0   1   0.0 0.0 677862.0, 677862.0 -0.85
BXD22/TyJ m 1196903.0 0.0   1   0.0 0.0 1196903.0, 1196903.0 -0.51
BXD24/TyJ m 395204.0 0.0   1   0.0 0.0 395204.0, 395204.0 -1.03
BXD24/TyJ-Cep290rd16/J m 578584.0 0.0   1   0.0 0.0 578584.0, 578584.0 -0.91
BXD28/TyJ m 5323887.0 1477610.0   2   1044828.0 0.278 4279059.0, 6368715.0 2.2
BXD29-Tlr4lps-2J/J m 363436.0 0.0   1   0.0 0.0 363436.0, 363436.0 -1.06
BXD2/TyJ m 1427006.0 0.0   1   0.0 0.0 1427006.0, 1427006.0 -0.36
BXD32/TyJ m 5833233.0 0.0   1   0.0 0.0 5833233.0, 5833233.0 2.53
BXD33/TyJ m 529568.0 0.0   1   0.0 0.0 529568.0, 529568.0 -0.95
BXD34/TyJ m 1135650.0 0.0   1   0.0 0.0 1135650.0, 1135650.0 -0.55
BXD36/TyJ m 639414.0 0.0   1   0.0 0.0 639414.0, 639414.0 -0.87
BXD38/TyJ m 2093390.0 0.0   1   0.0 0.0 2093390.0, 2093390.0 0.08
BXD39/TyJ m 610749.0 0.0   1   0.0 0.0 610749.0, 610749.0 -0.89
BXD40/TyJ m 2220738.0 0.0   1   0.0 0.0 2220738.0, 2220738.0 0.16
BXD42/TyJ m 1265554.0 0.0   1   0.0 0.0 1265554.0, 1265554.0 -0.46
BXD5/TyJ m 917637.0 0.0   1   0.0 0.0 917637.0, 917637.0 -0.69
BXD6/TyJ m 4881564.0 0.0   1   0.0 0.0 4881564.0, 4881564.0 1.91
BXD8/TyJ m 2856998.0 0.0   1   0.0 0.0 2856998.0, 2856998.0 0.58
BXD9/TyJ m 560475.0 0.0   1   0.0 0.0 560475.0, 560475.0 -0.93
BXH10/TyJ m 351324.0 0.0   1   0.0 0.0 351324.0, 351324.0 -1.06
BXH19/TyJ m 3333505.0 0.0   1   0.0 0.0 3333505.0, 3333505.0 0.89
BXH20/KccJ m 1265377.0 0.0   1   0.0 0.0 1265377.0, 1265377.0 -0.46
BXH22/KccJ m 4467646.0 0.0   1   0.0 0.0 4467646.0, 4467646.0 1.63
BXH2/TyJ m 1443227.0 0.0   1   0.0 0.0 1443227.0, 1443227.0 -0.35
BXH4/TyJ m 1324472.0 493359.0   2   348858.0 0.372 975614.0, 1673330.0 -0.43
BXH6/TyJ m 2274530.0 0.0   1   0.0 0.0 2274530.0, 2274530.0 0.2
BXH7/TyJ m 462669.0 0.0   1   0.0 0.0 462669.0, 462669.0 -0.99
BXH8/TyJ m 3264888.0 0.0   1   0.0 0.0 3264888.0, 3264888.0 0.85
BXH9/TyJ m 721441.0 0.0   1   0.0 0.0 721441.0, 721441.0 -0.82
C3H/HeJ m 758465.0 399752.0   2   282667.0 0.527 475798.0, 1041132.0 -0.8
C57BL/6J m 2918206.0 1375069.0   5 614950.0 0.471 1005692.0, 4763726.0 0.62
C57L/J m 5664178.0 0.0   1   0.0 0.0 5664178.0, 5664178.0 2.42
C58/J m 861456.0 0.0   1   0.0 0.0 861456.0, 861456.0 -0.73
CAST/EiJ m 974319.0 0.0   1   0.0 0.0 974319.0, 974319.0 -0.66
CBA/J m 923433.0 0.0   1   0.0 0.0 923433.0, 923433.0 -0.69
CE/J m 2790827.0 0.0   1   0.0 0.0 2790827.0, 2790827.0 0.54
CXB11/HiAJ m 1474919.0 1236820.0   2   874564.0 0.839 600355.0, 2349484.0 -0.33
CXB12/HiAJ m 6276129.0 1304838.0   2   922659.0 0.208 5353470.0, 7198788.0 2.82
CXB13/HiAJ m 3220109.0 2625618.0   3 1515901.0 0.815 575876.0, 5826706.0 0.82
CXB1/ByJ m 3405389.0 2253074.0   3 1300813.0 0.662 936183.0, 5349648.0 0.94
CXB2/ByJ m 3193163.0 1886956.0   3 1089434.0 0.591 1330262.0, 5103287.0 0.8
CXB3/ByJ m 3289962.0 1522342.0   2   1076458.0 0.463 2213504.0, 4366420.0 0.86
CXB4/ByJ m 1484863.0 1020654.0   2   721712.0 0.687 763151.0, 2206574.0 -0.32
CXB6/ByJ m 3623393.0 207560.0   3 119835.0 0.0573 3384872.0, 3762951.0 1.08
CXB7/ByJ m 1031347.0 532885.0   2   376807.0 0.517 654540.0, 1408153.0 -0.62
CXB8/HiAJ m 1854498.0 1818124.0   3 1049695.0 0.98 783131.0, 3953736.0 -0.08
CXB9/HiAJ m 4267660.0 1276381.0   3 736919.0 0.299 2908804.0, 5441336.0 1.5
DBA/2J m 534199.0 262124.0   4 131062.0 0.491 290988.0, 811011.0 -0.94
FVB/NJ m 521120.0 0.0   1   0.0 0.0 521120.0, 521120.0 -0.95
I/LnJ m 434525.0 0.0   1   0.0 0.0 434525.0, 434525.0 -1.01
KK/HlJ m 922965.0 0.0   1   0.0 0.0 922965.0, 922965.0 -0.69
LG/J m 596047.0 0.0   1   0.0 0.0 596047.0, 596047.0 -0.9
LP/J m 1685280.0 0.0   1   0.0 0.0 1685280.0, 1685280.0 -0.19
MA/MyJ m 4754705.0 0.0   1   0.0 0.0 4754705.0, 4754705.0 1.82
NOD/ShiLtJ m 1322346.0 0.0   1   0.0 0.0 1322346.0, 1322346.0 -0.43
NON/ShiLtJ m 1189330.0 0.0   1   0.0 0.0 1189330.0, 1189330.0 -0.51
NZW/LacJ m 5173508.0 0.0   1   0.0 0.0 5173508.0, 5173508.0 2.1
PL/J m 768691.0 0.0   1   0.0 0.0 768691.0, 768691.0 -0.79
RIIIS/J m 1818126.0 0.0   1   0.0 0.0 1818126.0, 1818126.0 -0.1
SEA/GnJ m 1395235.0 0.0   1   0.0 0.0 1395235.0, 1395235.0 -0.38
SJL/J m 675235.0 0.0   1   0.0 0.0 675235.0, 675235.0 -0.85
SM/J m 1139456.0 0.0   1   0.0 0.0 1139456.0, 1139456.0 -0.55
SWR/J m 792929.0 0.0   1   0.0 0.0 792929.0, 792929.0 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 831408.35 976210.3549 2815306.4836 0.0
AXB19b/PgnJ m 405103.35 976210.3549 2389001.4836 0.0
AXB24/PgnJ m 3474103.55 976210.3549 5458001.6836 1490205.4164
BALB/cJ m 2061619.5333 797072.417 3681465.5763 441773.4903
BXA16/PgnJ m 3691873.15 976210.3549 5675771.2836 1707975.0164
BXD19/TyJ m 1573335.35 976210.3549 3557233.4836 0.0
BXD28/TyJ m 5323887.0 976210.3549 7307785.1336 3339988.8664
BXH4/TyJ m 1324472.2 976210.3549 3308370.3336 0.0
C3H/HeJ m 758464.75 976210.3549 2742362.8836 0.0
C57BL/6J m 2918206.0 617409.6394 4172933.3496 1663478.6504
CXB11/HiAJ m 1474919.4 976210.3549 3458817.5336 0.0
CXB12/HiAJ m 6276129.0 976210.3549 8260027.1336 4292230.8664
CXB13/HiAJ m 3220108.8667 797072.417 4839954.9097 1600262.8237
CXB1/ByJ m 3405388.8 797072.417 5025234.843 1785542.757
CXB2/ByJ m 3193162.5333 797072.417 4813008.5763 1573316.4903
CXB3/ByJ m 3289962.4 976210.3549 5273860.5336 1306064.2664
CXB4/ByJ m 1484862.7 976210.3549 3468760.8336 0.0
CXB6/ByJ m 3623392.7 797072.417 5243238.743 2003546.657
CXB7/ByJ m 1031346.6 976210.3549 3015244.7336 0.0
CXB8/HiAJ m 1854497.5667 797072.417 3474343.6097 234651.5237
CXB9/HiAJ m 4267660.3333 797072.417 5887506.3763 2647814.2903
DBA/2J m 534199.075 690284.9618 1937026.8985 0.0




  GWAS USING LINEAR MIXED MODELS