Phenotype measure:   HMDPpheno8   hydroxystearate

ID, description, units MPD:50338   hydroxystearate   2-hydroxystearate (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno8 - 2-hydroxystearate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means33131   None
Median of the strain means31080   None
SD of the strain means± 11249
Coefficient of variation (CV)0.340
Min–max range of strain means12172   –   75064   None
Mean sample size per strain1.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 13 2674689244.3247 205745326.4865 3.3375 0.0069
Residuals 21 1294585040.345 61646906.6831


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 30678.0 0.0   1   0.0 0.0 30678.0, 30678.0 -0.22
A/J m 16559.0 0.0   1   0.0 0.0 16559.0, 16559.0 -1.47
AKR/J m 38055.0 0.0   1   0.0 0.0 38055.0, 38055.0 0.44
AXB10/PgnJ m 35886.0 0.0   1   0.0 0.0 35886.0, 35886.0 0.24
AXB12/PgnJ m 44866.0 0.0   1   0.0 0.0 44866.0, 44866.0 1.04
AXB13/PgnJ m 22712.0 0.0   1   0.0 0.0 22712.0, 22712.0 -0.93
AXB15/PgnJ m 28914.0 0.0   1   0.0 0.0 28914.0, 28914.0 -0.37
AXB19b/PgnJ m 38086.0 17451.0   2   12340.0 0.458 25746.0, 50426.0 0.44
AXB19/PgnJ m 33113.0 0.0   1   0.0 0.0 33113.0, 33113.0 0.0
AXB23/PgnJ m 24538.0 0.0   1   0.0 0.0 24538.0, 24538.0 -0.76
AXB24/PgnJ m 20623.0 0.0   1   0.0 0.0 20623.0, 20623.0 -1.11
AXB2/PgnJ m 32698.0 0.0   1   0.0 0.0 32698.0, 32698.0 -0.04
AXB4/PgnJ m 29764.0 0.0   1   0.0 0.0 29764.0, 29764.0 -0.3
AXB5/PgnJ m 29962.0 0.0   1   0.0 0.0 29962.0, 29962.0 -0.28
AXB8/PgnJ m 31747.0 0.0   1   0.0 0.0 31747.0, 31747.0 -0.12
BALB/cJ m 41306.0 5355.0   3 3092.0 0.13 35382.0, 45805.0 0.73
BUB/BnJ m 46724.0 0.0   1   0.0 0.0 46724.0, 46724.0 1.21
BXA11/PgnJ m 43531.0 0.0   1   0.0 0.0 43531.0, 43531.0 0.92
BXA12/PgnJ m 32229.0 0.0   1   0.0 0.0 32229.0, 32229.0 -0.08
BXA13/PgnJ m 40921.0 0.0   1   0.0 0.0 40921.0, 40921.0 0.69
BXA14/PgnJ m 30229.0 0.0   1   0.0 0.0 30229.0, 30229.0 -0.26
BXA16/PgnJ m 37912.0 4794.0   2   3390.0 0.126 34522.0, 41302.0 0.43
BXA1/PgnJ m 30854.0 0.0   1   0.0 0.0 30854.0, 30854.0 -0.2
BXA24/PgnJ m 24959.0 0.0   1   0.0 0.0 24959.0, 24959.0 -0.73
BXA25/PgnJ m 33725.0 0.0   1   0.0 0.0 33725.0, 33725.0 0.05
BXA2/PgnJ m 30622.0 0.0   1   0.0 0.0 30622.0, 30622.0 -0.22
BXA4/PgnJ m 42954.0 0.0   1   0.0 0.0 42954.0, 42954.0 0.87
BXA8/PgnJ m 17330.0 0.0   1   0.0 0.0 17330.0, 17330.0 -1.4
BXD11/TyJ m 12973.0 0.0   1   0.0 0.0 12973.0, 12973.0 -1.79
BXD13/TyJ m 44983.0 0.0   1   0.0 0.0 44983.0, 44983.0 1.05
BXD14/TyJ m 20911.0 0.0   1   0.0 0.0 20911.0, 20911.0 -1.09
BXD15/TyJ m 58404.0 0.0   1   0.0 0.0 58404.0, 58404.0 2.25
BXD18/TyJ m 21778.0 0.0   1   0.0 0.0 21778.0, 21778.0 -1.01
BXD19/TyJ m 24094.0 9560.0   2   6760.0 0.397 17334.0, 30854.0 -0.8
BXD1/TyJ m 27634.0 0.0   1   0.0 0.0 27634.0, 27634.0 -0.49
BXD20/TyJ m 25136.0 0.0   1   0.0 0.0 25136.0, 25136.0 -0.71
BXD21/TyJ m 28393.0 0.0   1   0.0 0.0 28393.0, 28393.0 -0.42
BXD22/TyJ m 28259.0 0.0   1   0.0 0.0 28259.0, 28259.0 -0.43
BXD24/TyJ m 25440.0 0.0   1   0.0 0.0 25440.0, 25440.0 -0.68
BXD24/TyJ-Cep290rd16/J m 40728.0 0.0   1   0.0 0.0 40728.0, 40728.0 0.68
BXD28/TyJ m 37078.0 12300.0   2   8697.0 0.332 28381.0, 45776.0 0.35
BXD29-Tlr4lps-2J/J m 28572.0 0.0   1   0.0 0.0 28572.0, 28572.0 -0.41
BXD2/TyJ m 28900.0 0.0   1   0.0 0.0 28900.0, 28900.0 -0.38
BXD32/TyJ m 31776.0 0.0   1   0.0 0.0 31776.0, 31776.0 -0.12
BXD33/TyJ m 24712.0 0.0   1   0.0 0.0 24712.0, 24712.0 -0.75
BXD34/TyJ m 43022.0 0.0   1   0.0 0.0 43022.0, 43022.0 0.88
BXD36/TyJ m 31080.0 0.0   1   0.0 0.0 31080.0, 31080.0 -0.18
BXD39/TyJ m 36247.0 0.0   1   0.0 0.0 36247.0, 36247.0 0.28
BXD40/TyJ m 29934.0 0.0   1   0.0 0.0 29934.0, 29934.0 -0.28
BXD42/TyJ m 53953.0 0.0   1   0.0 0.0 53953.0, 53953.0 1.85
BXD5/TyJ m 24127.0 0.0   1   0.0 0.0 24127.0, 24127.0 -0.8
BXD6/TyJ m 45510.0 0.0   1   0.0 0.0 45510.0, 45510.0 1.1
BXD9/TyJ m 24628.0 0.0   1   0.0 0.0 24628.0, 24628.0 -0.76
BXH10/TyJ m 24957.0 0.0   1   0.0 0.0 24957.0, 24957.0 -0.73
BXH19/TyJ m 34660.0 0.0   1   0.0 0.0 34660.0, 34660.0 0.14
BXH20/KccJ m 46351.0 0.0   1   0.0 0.0 46351.0, 46351.0 1.18
BXH22/KccJ m 31087.0 0.0   1   0.0 0.0 31087.0, 31087.0 -0.18
BXH2/TyJ m 62812.0 0.0   1   0.0 0.0 62812.0, 62812.0 2.64
BXH4/TyJ m 32718.0 0.0   1   0.0 0.0 32718.0, 32718.0 -0.04
BXH6/TyJ m 46448.0 0.0   1   0.0 0.0 46448.0, 46448.0 1.18
BXH7/TyJ m 33736.0 0.0   1   0.0 0.0 33736.0, 33736.0 0.05
BXH9/TyJ m 26851.0 0.0   1   0.0 0.0 26851.0, 26851.0 -0.56
C3H/HeJ m 36292.0 8010.0   2   5664.0 0.221 30628.0, 41956.0 0.28
C57BL/6J m 16995.0 6081.0   4 3041.0 0.358 9577.0, 24311.0 -1.43
C57L/J m 32988.0 0.0   1   0.0 0.0 32988.0, 32988.0 -0.01
C58/J m 34027.0 0.0   1   0.0 0.0 34027.0, 34027.0 0.08
CAST/EiJ m 29317.0 0.0   1   0.0 0.0 29317.0, 29317.0 -0.34
CBA/J m 25697.0 0.0   1   0.0 0.0 25697.0, 25697.0 -0.66
CE/J m 20825.0 0.0   1   0.0 0.0 20825.0, 20825.0 -1.09
CXB11/HiAJ m 27024.0 0.0   1   0.0 0.0 27024.0, 27024.0 -0.54
CXB12/HiAJ m 32380.0 0.0   1   0.0 0.0 32380.0, 32380.0 -0.07
CXB13/HiAJ m 49112.0 8530.0   2   6032.0 0.174 43080.0, 55143.0 1.42
CXB1/ByJ m 29352.0 7638.0   3 4410.0 0.26 23049.0, 37846.0 -0.34
CXB2/ByJ m 37395.0 8090.0   3 4671.0 0.216 30230.0, 46168.0 0.38
CXB3/ByJ m 25543.0 0.0   1   0.0 0.0 25543.0, 25543.0 -0.67
CXB4/ByJ m 30461.0 4647.0   2   3286.0 0.153 27175.0, 33747.0 -0.24
CXB6/ByJ m 20114.0 2211.0   2   1564.0 0.11 18550.0, 21677.0 -1.16
CXB7/ByJ m 32758.0 0.0   1   0.0 0.0 32758.0, 32758.0 -0.03
CXB8/HiAJ m 24257.0 10789.0   2   7629.0 0.445 16628.0, 31886.0 -0.79
CXB9/HiAJ m 16047.0 0.0   1   0.0 0.0 16047.0, 16047.0 -1.52
DBA/2J m 27845.0 3093.0   4 1546.0 0.111 24205.0, 31650.0 -0.47
FVB/NJ m 34785.0 0.0   1   0.0 0.0 34785.0, 34785.0 0.15
I/LnJ m 38889.0 0.0   1   0.0 0.0 38889.0, 38889.0 0.51
KK/HlJ m 12172.0 0.0   1   0.0 0.0 12172.0, 12172.0 -1.86
LG/J m 62339.0 0.0   1   0.0 0.0 62339.0, 62339.0 2.6
LP/J m 29166.0 0.0   1   0.0 0.0 29166.0, 29166.0 -0.35
NON/ShiLtJ m 21674.0 0.0   1   0.0 0.0 21674.0, 21674.0 -1.02
NZW/LacJ m 27546.0 0.0   1   0.0 0.0 27546.0, 27546.0 -0.5
PL/J m 39788.0 0.0   1   0.0 0.0 39788.0, 39788.0 0.59
RIIIS/J m 75064.0 0.0   1   0.0 0.0 75064.0, 75064.0 3.73
SEA/GnJ m 43004.0 0.0   1   0.0 0.0 43004.0, 43004.0 0.88
SJL/J m 35654.0 0.0   1   0.0 0.0 35654.0, 35654.0 0.22
SWR/J m 63258.0 0.0   1   0.0 0.0 63258.0, 63258.0 2.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB19b/PgnJ m 38085.95 5551.8874 49631.7318 26540.1682
BALB/cJ m 41305.7667 4533.0971 50732.8581 31878.6753
BXA16/PgnJ m 37912.35 5551.8874 49458.1318 26366.5682
BXD19/TyJ m 24094.3 5551.8874 35640.0818 12548.5182
BXD28/TyJ m 37078.35 5551.8874 48624.1318 25532.5682
C3H/HeJ m 36292.15 5551.8874 47837.9318 24746.3682
C57BL/6J m 16994.65 3925.7772 25158.7506 8830.5494
CXB13/HiAJ m 49111.6 5551.8874 60657.3818 37565.8182
CXB1/ByJ m 29352.2333 4533.0971 38779.3247 19925.1419
CXB2/ByJ m 37395.3667 4533.0971 46822.4581 27968.2753
CXB4/ByJ m 30461.2 5551.8874 42006.9818 18915.4182
CXB6/ByJ m 20113.5 5551.8874 31659.2818 8567.7182
CXB8/HiAJ m 24256.75 5551.8874 35802.5318 12710.9682
DBA/2J m 27845.15 3925.7772 36009.2506 19681.0494




  GWAS USING LINEAR MIXED MODELS