Project measure / variable:   HMDPpheno8   DPA

ID, description, units MPD:50324   DPA   docosapentaenoate (n3 DPA; 22:5n3) (16h fast), relative abundance    
Data set, strains HMDPpheno8   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno8 - docosapentaenoate (n3 DPA; 22:5n3) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means4155240   None
Median of the strain means4062583   None
SD of the strain means± 1362146
Coefficient of variation (CV)0.328
Min–max range of strain means1587632   –   8328628   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 103211838988235.0 4914849475630.26 2.3678 0.0123
Residuals 34 70574954354348.0 2075733951598.47


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 3328374.0 0.0   1   0.0 0.0 3328374.0, 3328374.0 -0.61
A/J m 3449557.0 42035.0   2   29723.0 0.0122 3419834.0, 3479281.0 -0.52
AKR/J m 2466270.0 0.0   1   0.0 0.0 2466270.0, 2466270.0 -1.24
AXB10/PgnJ m 3706828.0 0.0   1   0.0 0.0 3706828.0, 3706828.0 -0.33
AXB12/PgnJ m 3489975.0 0.0   1   0.0 0.0 3489975.0, 3489975.0 -0.49
AXB13/PgnJ m 3928078.0 0.0   1   0.0 0.0 3928078.0, 3928078.0 -0.17
AXB15/PgnJ m 3082600.0 0.0   1   0.0 0.0 3082600.0, 3082600.0 -0.79
AXB19a/PgnJ m 4564860.0 0.0   1   0.0 0.0 4564860.0, 4564860.0 0.3
AXB19b/PgnJ m 4230549.0 343571.0   2   242941.0 0.0812 3987607.0, 4473490.0 0.06
AXB19/PgnJ m 6177530.0 0.0   1   0.0 0.0 6177530.0, 6177530.0 1.48
AXB1/PgnJ m 3684163.0 0.0   1   0.0 0.0 3684163.0, 3684163.0 -0.35
AXB23/PgnJ m 4970115.0 0.0   1   0.0 0.0 4970115.0, 4970115.0 0.6
AXB24/PgnJ m 3883086.0 927139.0   2   655586.0 0.239 3227500.0, 4538672.0 -0.2
AXB2/PgnJ m 3833557.0 0.0   1   0.0 0.0 3833557.0, 3833557.0 -0.24
AXB4/PgnJ m 5440748.0 0.0   1   0.0 0.0 5440748.0, 5440748.0 0.94
AXB5/PgnJ m 2746289.0 0.0   1   0.0 0.0 2746289.0, 2746289.0 -1.03
AXB6/PgnJ m 6730870.0 0.0   1   0.0 0.0 6730870.0, 6730870.0 1.89
AXB8/PgnJ m 5840828.0 0.0   1   0.0 0.0 5840828.0, 5840828.0 1.24
BALB/cJ m 4757066.0 71703.0   3 41398.0 0.0151 4702997.0, 4838402.0 0.44
BTBR T+ Itpr3tf/J m 2708631.0 0.0   1   0.0 0.0 2708631.0, 2708631.0 -1.06
BUB/BnJ m 3348180.0 0.0   1   0.0 0.0 3348180.0, 3348180.0 -0.59
BXA11/PgnJ m 4071854.0 0.0   1   0.0 0.0 4071854.0, 4071854.0 -0.06
BXA12/PgnJ m 4668438.0 0.0   1   0.0 0.0 4668438.0, 4668438.0 0.38
BXA13/PgnJ m 3328129.0 0.0   1   0.0 0.0 3328129.0, 3328129.0 -0.61
BXA14/PgnJ m 1587632.0 0.0   1   0.0 0.0 1587632.0, 1587632.0 -1.88
BXA16/PgnJ m 4369480.0 665094.0   2   470292.0 0.152 3899188.0, 4839772.0 0.16
BXA1/PgnJ m 7071248.0 0.0   1   0.0 0.0 7071248.0, 7071248.0 2.14
BXA24/PgnJ m 4778643.0 0.0   1   0.0 0.0 4778643.0, 4778643.0 0.46
BXA25/PgnJ m 3644164.0 0.0   1   0.0 0.0 3644164.0, 3644164.0 -0.38
BXA26/PgnJ m 5171806.0 0.0   1   0.0 0.0 5171806.0, 5171806.0 0.75
BXA2/PgnJ m 4939716.0 0.0   1   0.0 0.0 4939716.0, 4939716.0 0.58
BXA4/PgnJ m 1797881.0 0.0   1   0.0 0.0 1797881.0, 1797881.0 -1.73
BXA7/PgnJ m 3960869.0 0.0   1   0.0 0.0 3960869.0, 3960869.0 -0.14
BXA8/PgnJ m 6943295.0 0.0   1   0.0 0.0 6943295.0, 6943295.0 2.05
BXD11/TyJ m 2493678.0 0.0   1   0.0 0.0 2493678.0, 2493678.0 -1.22
BXD12/TyJ m 4329650.0 0.0   1   0.0 0.0 4329650.0, 4329650.0 0.13
BXD13/TyJ m 3302271.0 0.0   1   0.0 0.0 3302271.0, 3302271.0 -0.63
BXD14/TyJ m 4126800.0 0.0   1   0.0 0.0 4126800.0, 4126800.0 -0.02
BXD15/TyJ m 2078558.0 0.0   1   0.0 0.0 2078558.0, 2078558.0 -1.52
BXD18/TyJ m 3647635.0 0.0   1   0.0 0.0 3647635.0, 3647635.0 -0.37
BXD19/TyJ m 4041844.0 55742.0   2   39416.0 0.0138 4002428.0, 4081260.0 -0.08
BXD1/TyJ m 4942469.0 0.0   1   0.0 0.0 4942469.0, 4942469.0 0.58
BXD20/TyJ m 3369800.0 0.0   1   0.0 0.0 3369800.0, 3369800.0 -0.58
BXD21/TyJ m 2823990.0 0.0   1   0.0 0.0 2823990.0, 2823990.0 -0.98
BXD22/TyJ m 3122520.0 0.0   1   0.0 0.0 3122520.0, 3122520.0 -0.76
BXD24/TyJ m 2532238.0 0.0   1   0.0 0.0 2532238.0, 2532238.0 -1.19
BXD24/TyJ-Cep290rd16/J m 2004527.0 0.0   1   0.0 0.0 2004527.0, 2004527.0 -1.58
BXD28/TyJ m 3711773.0 685120.0   2   484453.0 0.185 3227320.0, 4196226.0 -0.33
BXD29-Tlr4lps-2J/J m 4075001.0 0.0   1   0.0 0.0 4075001.0, 4075001.0 -0.06
BXD2/TyJ m 5757247.0 0.0   1   0.0 0.0 5757247.0, 5757247.0 1.18
BXD32/TyJ m 4861652.0 0.0   1   0.0 0.0 4861652.0, 4861652.0 0.52
BXD33/TyJ m 2359216.0 0.0   1   0.0 0.0 2359216.0, 2359216.0 -1.32
BXD34/TyJ m 2406442.0 0.0   1   0.0 0.0 2406442.0, 2406442.0 -1.28
BXD36/TyJ m 3446830.0 0.0   1   0.0 0.0 3446830.0, 3446830.0 -0.52
BXD38/TyJ m 2540559.0 0.0   1   0.0 0.0 2540559.0, 2540559.0 -1.19
BXD39/TyJ m 8328628.0 0.0   1   0.0 0.0 8328628.0, 8328628.0 3.06
BXD40/TyJ m 3258703.0 0.0   1   0.0 0.0 3258703.0, 3258703.0 -0.66
BXD42/TyJ m 3989249.0 0.0   1   0.0 0.0 3989249.0, 3989249.0 -0.12
BXD5/TyJ m 4226538.0 0.0   1   0.0 0.0 4226538.0, 4226538.0 0.05
BXD6/TyJ m 3435328.0 0.0   1   0.0 0.0 3435328.0, 3435328.0 -0.53
BXD8/TyJ m 1972464.0 0.0   1   0.0 0.0 1972464.0, 1972464.0 -1.6
BXD9/TyJ m 5552323.0 0.0   1   0.0 0.0 5552323.0, 5552323.0 1.03
BXH10/TyJ m 3916354.0 0.0   1   0.0 0.0 3916354.0, 3916354.0 -0.18
BXH19/TyJ m 4500526.0 0.0   1   0.0 0.0 4500526.0, 4500526.0 0.25
BXH20/KccJ m 4828110.0 0.0   1   0.0 0.0 4828110.0, 4828110.0 0.49
BXH22/KccJ m 5074860.0 0.0   1   0.0 0.0 5074860.0, 5074860.0 0.68
BXH2/TyJ m 4771396.0 0.0   1   0.0 0.0 4771396.0, 4771396.0 0.45
BXH4/TyJ m 4053312.0 490281.0   2   346681.0 0.121 3706631.0, 4399993.0 -0.07
BXH6/TyJ m 3554402.0 0.0   1   0.0 0.0 3554402.0, 3554402.0 -0.44
BXH7/TyJ m 2696024.0 0.0   1   0.0 0.0 2696024.0, 2696024.0 -1.07
BXH8/TyJ m 4804852.0 0.0   1   0.0 0.0 4804852.0, 4804852.0 0.48
BXH9/TyJ m 4392416.0 0.0   1   0.0 0.0 4392416.0, 4392416.0 0.17
C3H/HeJ m 4673196.0 1583769.0   2   1119894.0 0.339 3553302.0, 5793090.0 0.38
C57BL/6J m 4248216.0 851860.0   5 380963.0 0.201 2774767.0, 4864321.0 0.07
C57L/J m 5775170.0 0.0   1   0.0 0.0 5775170.0, 5775170.0 1.19
C58/J m 3242316.0 0.0   1   0.0 0.0 3242316.0, 3242316.0 -0.67
CAST/EiJ m 1745472.0 0.0   1   0.0 0.0 1745472.0, 1745472.0 -1.77
CBA/J m 4603510.0 0.0   1   0.0 0.0 4603510.0, 4603510.0 0.33
CE/J m 5888810.0 0.0   1   0.0 0.0 5888810.0, 5888810.0 1.27
CXB11/HiAJ m 4302289.0 1008491.0   2   713111.0 0.234 3589178.0, 5015400.0 0.11
CXB12/HiAJ m 3831672.0 404073.0   2   285723.0 0.105 3545948.0, 4117394.0 -0.24
CXB13/HiAJ m 5425743.0 391641.0   3 226114.0 0.0722 5011428.0, 5789872.0 0.93
CXB1/ByJ m 6526188.0 1838852.0   3 1061662.0 0.282 5379168.0, 8647159.0 1.74
CXB2/ByJ m 8095118.0 2333681.0   3 1347352.0 0.288 6247733.0, 10717765.0 2.89
CXB3/ByJ m 4599332.0 670284.0   2   473962.0 0.146 4125370.0, 5073295.0 0.33
CXB4/ByJ m 6438498.0 668194.0   2   472484.0 0.104 5966014.0, 6910983.0 1.68
CXB6/ByJ m 4519083.0 3156198.0   3 1822232.0 0.698 2511030.0, 8157000.0 0.27
CXB7/ByJ m 5297198.0 1017363.0   2   719384.0 0.192 4577814.0, 6016582.0 0.84
CXB8/HiAJ m 6652109.0 1348607.0   3 778619.0 0.203 5343762.0, 8037660.0 1.83
CXB9/HiAJ m 6520719.0 2934616.0   3 1694301.0 0.45 3958038.0, 9722078.0 1.74
DBA/2J m 2535033.0 622280.0   4 311140.0 0.245 2008752.0, 3413328.0 -1.19
FVB/NJ m 2714280.0 0.0   1   0.0 0.0 2714280.0, 2714280.0 -1.06
I/LnJ m 3646657.0 0.0   1   0.0 0.0 3646657.0, 3646657.0 -0.37
KK/HlJ m 5899964.0 0.0   1   0.0 0.0 5899964.0, 5899964.0 1.28
LG/J m 4685394.0 0.0   1   0.0 0.0 4685394.0, 4685394.0 0.39
LP/J m 3204393.0 0.0   1   0.0 0.0 3204393.0, 3204393.0 -0.7
MA/MyJ m 2694296.0 0.0   1   0.0 0.0 2694296.0, 2694296.0 -1.07
NOD/ShiLtJ m 4073284.0 0.0   1   0.0 0.0 4073284.0, 4073284.0 -0.06
NON/ShiLtJ m 2908156.0 0.0   1   0.0 0.0 2908156.0, 2908156.0 -0.92
NZW/LacJ m 5622167.0 0.0   1   0.0 0.0 5622167.0, 5622167.0 1.08
PL/J m 4072595.0 0.0   1   0.0 0.0 4072595.0, 4072595.0 -0.06
RIIIS/J m 3585048.0 0.0   1   0.0 0.0 3585048.0, 3585048.0 -0.42
SEA/GnJ m 3069217.0 0.0   1   0.0 0.0 3069217.0, 3069217.0 -0.8
SJL/J m 4126059.0 0.0   1   0.0 0.0 4126059.0, 4126059.0 -0.02
SM/J m 2668718.0 0.0   1   0.0 0.0 2668718.0, 2668718.0 -1.09
SWR/J m 4534030.0 0.0   1   0.0 0.0 4534030.0, 4534030.0 0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 3449557.4 1018757.5648 5519921.8674 1379192.9326
AXB19b/PgnJ m 4230548.65 1018757.5648 6300913.1174 2160184.1826
AXB24/PgnJ m 3883086.5 1018757.5648 5953450.9674 1812722.0326
BALB/cJ m 4757065.6667 831812.0684 6447511.1755 3066620.1578
BXA16/PgnJ m 4369480.25 1018757.5648 6439844.7174 2299115.7826
BXD19/TyJ m 4041843.65 1018757.5648 6112208.1174 1971479.1826
BXD28/TyJ m 3711773.0 1018757.5648 5782137.4674 1641408.5326
BXH4/TyJ m 4053312.0 1018757.5648 6123676.4674 1982947.5326
C3H/HeJ m 4673196.25 1018757.5648 6743560.7174 2602831.7826
C57BL/6J m 4248215.66 644318.8576 5557629.1207 2938802.1993
CXB11/HiAJ m 4302289.25 1018757.5648 6372653.7174 2231924.7826
CXB12/HiAJ m 3831671.5 1018757.5648 5902035.9674 1761307.0326
CXB13/HiAJ m 5425742.8333 831812.0684 7116188.3422 3735297.3245
CXB1/ByJ m 6526187.5 831812.0684 8216633.0089 4835741.9911
CXB2/ByJ m 8095118.5 831812.0684 9785564.0089 6404672.9911
CXB3/ByJ m 4599332.5 1018757.5648 6669696.9674 2528968.0326
CXB4/ByJ m 6438498.5 1018757.5648 8508862.9674 4368134.0326
CXB6/ByJ m 4519083.4333 831812.0684 6209528.9422 2828637.9245
CXB7/ByJ m 5297198.25 1018757.5648 7367562.7174 3226833.7826
CXB8/HiAJ m 6652109.3333 831812.0684 8342554.8422 4961663.8245
CXB9/HiAJ m 6520718.8333 831812.0684 8211164.3422 4830273.3245
DBA/2J m 2535032.85 720370.3824 3999001.6044 1071064.0956




  GWAS USING LINEAR MIXED MODELS